View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5650_low_2 (Length: 494)

Name: NF5650_low_2
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5650_low_2
NF5650_low_2
[»] chr7 (26 HSPs)
chr7 (18-475)||(21471389-21471846)
chr7 (28-198)||(5722004-5722174)
chr7 (284-475)||(20470876-20471068)
chr7 (208-405)||(9761541-9761735)
chr7 (360-475)||(22067872-22067987)
chr7 (370-475)||(7815267-7815372)
chr7 (22-225)||(7955789-7955985)
chr7 (357-472)||(20446170-20446285)
chr7 (270-363)||(7494556-7494648)
chr7 (33-227)||(1074076-1074270)
chr7 (381-475)||(29544475-29544568)
chr7 (413-475)||(315172-315234)
chr7 (357-475)||(2632502-2632620)
chr7 (41-170)||(25706097-25706226)
chr7 (388-475)||(23124864-23124949)
chr7 (358-425)||(4092604-4092671)
chr7 (413-475)||(9066119-9066181)
chr7 (285-363)||(16536751-16536829)
chr7 (285-363)||(16628833-16628911)
chr7 (348-405)||(9802000-9802057)
chr7 (403-475)||(9385465-9385537)
chr7 (44-86)||(7697065-7697107)
chr7 (414-475)||(1255279-1255340)
chr7 (290-363)||(16577449-16577522)
chr7 (290-363)||(16588140-16588213)
chr7 (324-365)||(39270239-39270280)
[»] chr3 (17 HSPs)
chr3 (18-475)||(11520732-11521189)
chr3 (266-475)||(21017717-21017926)
chr3 (360-458)||(12573224-12573322)
chr3 (360-458)||(13549688-13549786)
chr3 (358-475)||(1475346-1475463)
chr3 (280-475)||(8402616-8402811)
chr3 (367-469)||(25919536-25919638)
chr3 (358-475)||(33914628-33914745)
chr3 (29-363)||(5632668-5633000)
chr3 (284-475)||(13911123-13911314)
chr3 (158-275)||(13908349-13908465)
chr3 (369-458)||(25188701-25188790)
chr3 (358-475)||(25883035-25883152)
chr3 (61-151)||(19167056-19167145)
chr3 (409-475)||(21829198-21829264)
chr3 (324-365)||(16223571-16223612)
chr3 (324-365)||(19912670-19912711)
[»] chr6 (15 HSPs)
chr6 (17-454)||(15574534-15574953)
chr6 (41-454)||(12972471-12972883)
chr6 (19-204)||(15576429-15576613)
chr6 (18-188)||(16526924-16527093)
chr6 (104-310)||(17860643-17860848)
chr6 (67-430)||(1755663-1756026)
chr6 (381-471)||(13759521-13759611)
chr6 (381-475)||(30355282-30355375)
chr6 (388-458)||(14924500-14924569)
chr6 (359-476)||(15998444-15998561)
chr6 (409-458)||(32930555-32930604)
chr6 (30-151)||(8322602-8322722)
chr6 (388-458)||(26512860-26512929)
chr6 (388-458)||(26517976-26518045)
chr6 (324-365)||(22569944-22569985)
[»] chr1 (22 HSPs)
chr1 (135-475)||(21451882-21452221)
chr1 (208-475)||(30675264-30675533)
chr1 (18-108)||(23223130-23223220)
chr1 (284-475)||(23223269-23223460)
chr1 (358-475)||(8247723-8247840)
chr1 (106-458)||(15298952-15299304)
chr1 (357-433)||(12424022-12424098)
chr1 (28-105)||(31313020-31313097)
chr1 (357-475)||(34381639-34381757)
chr1 (409-475)||(11770060-11770126)
chr1 (399-475)||(24903361-24903437)
chr1 (388-449)||(30781722-30781783)
chr1 (287-356)||(31313413-31313482)
chr1 (56-112)||(14397286-14397342)
chr1 (403-475)||(50047158-50047230)
chr1 (21-86)||(27754778-27754843)
chr1 (27-80)||(31313107-31313160)
chr1 (388-475)||(12810285-12810371)
chr1 (403-474)||(18795158-18795229)
chr1 (381-475)||(25266411-25266503)
chr1 (358-475)||(23519821-23519939)
chr1 (403-475)||(26657453-26657525)
[»] chr4 (19 HSPs)
chr4 (89-460)||(1696650-1697017)
chr4 (236-473)||(1676363-1676599)
chr4 (236-473)||(1682891-1683127)
chr4 (359-475)||(9783049-9783165)
chr4 (358-475)||(27302710-27302827)
chr4 (358-475)||(25315297-25315414)
chr4 (403-475)||(18897968-18898040)
chr4 (388-475)||(5906786-5906872)
chr4 (361-475)||(12111398-12111510)
chr4 (33-83)||(15787860-15787910)
chr4 (381-458)||(34864374-34864450)
chr4 (29-131)||(12608264-12608365)
chr4 (360-433)||(15192137-15192210)
chr4 (388-473)||(22119609-22119693)
chr4 (298-355)||(38656497-38656554)
chr4 (29-145)||(25096612-25096727)
chr4 (409-451)||(5125587-5125629)
chr4 (324-366)||(22346168-22346210)
chr4 (381-467)||(31859954-31860039)
[»] chr8 (18 HSPs)
chr8 (18-470)||(16052348-16052800)
chr8 (18-475)||(28901406-28901860)
chr8 (18-429)||(22894646-22895055)
chr8 (342-454)||(13082024-13082136)
chr8 (133-475)||(24119938-24120280)
chr8 (358-475)||(16054226-16054343)
chr8 (122-475)||(5570207-5570566)
chr8 (356-456)||(29047401-29047501)
chr8 (27-228)||(12755800-12756001)
chr8 (403-475)||(14977173-14977245)
chr8 (388-475)||(12956452-12956538)
chr8 (358-475)||(26882340-26882457)
chr8 (381-475)||(32239243-32239336)
chr8 (29-145)||(17099875-17099990)
chr8 (286-458)||(29291629-29291803)
chr8 (324-365)||(29765357-29765398)
chr8 (61-145)||(25227572-25227655)
chr8 (410-454)||(31436463-31436507)
[»] chr5 (22 HSPs)
chr5 (18-471)||(17027128-17027572)
chr5 (17-433)||(22754547-22754955)
chr5 (21-475)||(24841359-24841802)
chr5 (17-279)||(11274612-11274873)
chr5 (21-328)||(23125153-23125460)
chr5 (19-223)||(19331163-19331367)
chr5 (380-475)||(24517309-24517403)
chr5 (362-475)||(12340080-12340191)
chr5 (381-475)||(25594758-25594851)
chr5 (388-475)||(17382101-17382187)
chr5 (358-433)||(22229741-22229816)
chr5 (358-475)||(15205577-15205692)
chr5 (380-458)||(30072133-30072210)
chr5 (413-475)||(18222480-18222542)
chr5 (291-377)||(12029485-12029571)
chr5 (403-473)||(22967910-22967980)
chr5 (404-458)||(24846239-24846293)
chr5 (360-450)||(25075328-25075417)
chr5 (360-450)||(25133297-25133386)
chr5 (30-151)||(34489162-34489282)
chr5 (292-352)||(22644052-22644112)
chr5 (381-453)||(26070430-26070501)
[»] chr2 (24 HSPs)
chr2 (140-475)||(28278489-28278820)
chr2 (358-471)||(25473969-25474082)
chr2 (358-475)||(35707735-35707852)
chr2 (21-225)||(22389069-22389271)
chr2 (113-354)||(17415357-17415597)
chr2 (358-454)||(1733033-1733128)
chr2 (46-188)||(39730111-39730255)
chr2 (381-475)||(21505205-21505298)
chr2 (285-405)||(39730306-39730427)
chr2 (404-475)||(21843068-21843139)
chr2 (404-467)||(21844703-21844766)
chr2 (59-204)||(29769359-29769505)
chr2 (409-475)||(30998754-30998820)
chr2 (285-467)||(32276587-32276769)
chr2 (358-458)||(16593835-16593942)
chr2 (29-137)||(25532562-25532669)
chr2 (388-475)||(19949620-19949707)
chr2 (388-475)||(24047345-24047431)
chr2 (325-376)||(29769588-29769639)
chr2 (293-475)||(31449824-31450006)
chr2 (287-353)||(22510821-22510887)
chr2 (324-365)||(25886157-25886198)
chr2 (402-475)||(31261975-31262048)
chr2 (287-363)||(27918160-27918236)
[»] scaffold0282 (1 HSPs)
scaffold0282 (264-425)||(22661-22821)
[»] scaffold1026 (1 HSPs)
scaffold1026 (46-183)||(2186-2323)
[»] scaffold0990 (2 HSPs)
scaffold0990 (97-191)||(3141-3235)
scaffold0990 (18-67)||(3084-3133)
[»] scaffold0002 (1 HSPs)
scaffold0002 (358-475)||(446937-447054)
[»] scaffold0171 (1 HSPs)
scaffold0171 (358-475)||(6128-6245)
[»] scaffold0386 (2 HSPs)
scaffold0386 (381-458)||(13154-13230)
scaffold0386 (381-457)||(8793-8868)
[»] scaffold0072 (1 HSPs)
scaffold0072 (324-365)||(38381-38422)
[»] scaffold0043 (1 HSPs)
scaffold0043 (325-365)||(88403-88443)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 21471389 - 21471846
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21471389 atgatatatacattgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagcccca 21471488  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21471489 ttggatttaggagacacatacatgtatcttggaattgtacgtggttgaaagtaagagtatcctctctaagtttgatccacttgcatgaaggtggtaagct 21471588  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctatt 317  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21471589 agtcaagtttgatagtgggaggaatgacaatctgagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattttaacttctagctatt 21471688  T
Q  318 gtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttg 417  Q
    || ||||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21471689 gtattgcttgaggacaatcaacagtttaagtttggggttgtgatgacagagcatcatatgccattttggttatgtttttagtactttttccttgcatttg 21471788  T
Q  418 aagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21471789 aagacaaataagatgatatttagaggatttgtcaatgattttaagaacatattatatt 21471846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 5722004 - 5722174
Alignment:
Q  28 ccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttag 127  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| || |||||  |||  ||| ||||||||  |||||    
T  5722004 ccttgaatgcctatttagaattgcttcaatctcatagcaagatacaatcaaatgactactggagtgtgacaaatttctttcccatccccactgactttag 5722103  T
Q  128 gagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgct 198  Q
    |||| |||||| ||||||||||||| ||| ||||||||||| ||||||||| ||||||||| || ||||||    
T  5722104 gagatacatacgtgtatcttggaattgtaagtggttgaaagcaagagtatcttctctaagtatggtccgct 5722174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 475
Target Start/End: Complemental strand, 20471068 - 20470876
Alignment:
Q  284 tttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaa-caatttaagtttggggttatgatgacaaagcatcatatg-ccat 381  Q
    |||||||| |||| |||| |||||||| ||||| |||||||||||||| || ||| |||||||||||||||||| ||||||| ||||||||||||    |    
T  20471068 tttaaatttatgtaaattataacttcttgctatcgtgttgcttgaggacaaacaaacaatttaagtttggggttgtgatgacgaagcatcatatgaattt 20470969  T
Q  382 tttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| | |||||||||| | ||||  ||  || |||||||||||||||||||| |||||||| ||||||||||||| | ||||||||| ||||    
T  20470968 tttggctttgtttttagtac-ttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtttgaggaacatattatatt 20470876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 405
Target Start/End: Complemental strand, 9761735 - 9761541
Alignment:
Q  208 gtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaact 307  Q
    |||||||| ||||||||| |||||||  ||||||| | ||||| || ||| | ||||||| | ||||||||| | |||||  | ||||| ||||||||||    
T  9761735 gtggtaagttagtcaagtctgatagtgagaggaataaaaatctgagaaaatc-ttcggaatgctatgttttactattttag-tccatgtgaattctaact 9761638  T
Q  308 tctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttt 405  Q
    ||  |||||||| | ||||||||| || ||||||||||| ||||||||| |||||||| ||||||||||| |||||||| || ||||||||| |||||    
T  9761637 tcatgctattgtctagcttgaggacaagcaacaatttaa-tttggggttgtgatgacagagcatcatatgacattttggctacgtttttagtactttt 9761541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 360 - 475
Target Start/End: Complemental strand, 22067987 - 22067872
Alignment:
Q  360 atgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtttt 459  Q
    |||| ||||||||||||| |||||||| ||||||||||||  |||||  ||||||||||||||||||||||||| | ||| |||| |||||||||||||     
T  22067987 atgataaagcatcatatgacattttggctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttg 22067888  T
Q  460 aagaacatattgtatt 475  Q
    | ||||||| ||||||    
T  22067887 aggaacataatgtatt 22067872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 475
Target Start/End: Original strand, 7815267 - 7815372
Alignment:
Q  370 atcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatat 469  Q
    ||||||||  |||||||||||||||||||| ||||||  ||||||||||||| ||||||||||| | ||| |||| ||||||||||||| |  |||||||    
T  7815267 atcatatgatattttggttatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatat 7815366  T
Q  470 tgtatt 475  Q
    ||||||    
T  7815367 tgtatt 7815372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 7955789 - 7955985
Alignment:
Q  22 tatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactgg 121  Q
    |||||| ||||| ||||| ||| ||||||||| | ||||||| |||||||||||||||||| |||| ||||  ||||||||||||||  |||||   ||     
T  7955789 tatatatcttgagtgtctgtttggaattgctttagtctcataacaaggtacaatcacatgatgactggagtggggcaaatgccttgagaagccctgttga 7955888  T
Q  122 atttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtc 221  Q
    |||||||||  ||| || ||||||||||||| ||| ||| ||||||||       || |||||| ||| | |||||||| ||| | ||||||||||||||    
T  7955889 atttaggaggtacacacgtgtatcttggaattgtaagtgcttgaaagt-------tcttctctatgttggttccgcttgaatgtaagtggtaagctagtc 7955981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 472
Target Start/End: Original strand, 20446170 - 20446285
Alignment:
Q  357 atgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggt 456  Q
    ||||||||| |||| ||||||  ||||| | |||||||||| | ||||||| |||||||||||||||| |||||||| | |||||||| |||||||||||    
T  20446170 atgatgacagagcaacatatgatattttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggt 20446269  T
Q  457 tttaagaacatattgt 472  Q
    || |  ||||||||||    
T  20446270 ttcagaaacatattgt 20446285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 7494556 - 7494648
Alignment:
Q  270 gtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    |||||||| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||| || ||||| |||||||||| |||| ||||||    
T  7494556 gtatgtttcattcttt-aaattcatgtaaattctgacttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatga 7494648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 227
Target Start/End: Original strand, 1074076 - 1074270
Alignment:
Q  33 aatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagac 132  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||||||| || |||| ||| |||||||| ||||   | || ||  ||||||||      
T  1074076 aatgtctgtttgaaattgcttcaatctcataacaaggtacaatcacatgacgtctggagtgtggaaaatgcctagacctttcacattgactttaggaggt 1074175  T
Q  133 acatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagttt 227  Q
    |||||  ||  ||||| ||| | | ||| ||||||||||||||||  ||||||| || |  |||| |||||||| ||||||| ||| ||||||||    
T  1074176 acatatgtgcgtcttgtaattggaagtgattgaaagtaagagtatattctctaaattggcgccgcatgcatgaaagtggtaaactaatcaagttt 1074270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 29544475 - 29544568
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| |||||||||| ||  ||||| ||||||||||||||||||||||||| | |||||||| |||||||| |||| | ||||||||||||||    
T  29544475 ttttggctatgttttta-ttaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatattgtatt 29544568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 315172 - 315234
Alignment:
Q  413 atttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||| ||||||||||| | |||||||| ||||||||||||| ||||| ||||||||||    
T  315172 atttgaagaaaaataagatgagagttagaggagttgtcaatggtttgaagaatatattgtatt 315234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 2632620 - 2632502
Alignment:
Q  357 atgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggt 456  Q
    ||||||||| || ||| ||||  ||||| ||||||||| |||| ||||||| |||||||| ||||| ||||  |||| | |||||||| ||||  ||| |    
T  2632620 atgatgacagagtatcgtatgatatttttgttatgtttatagtactttttctttgcatttaaagactaatagtatgagagttagaggagttgttgatgat 2632521  T
Q  457 tttaagaacatattgtatt 475  Q
    |||| ||||||||||||||    
T  2632520 tttaggaacatattgtatt 2632502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 25706097 - 25706226
Alignment:
Q  41 tttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacat 140  Q
    |||| |||||||||||   |||||||||| ||||| |||| | ||||  ||||||   |||| |||||||| || ||||| |||||||| | |||| |||    
T  25706097 tttataattgcttcaaatacatagcaaggcacaattacataatgactgaagtatgtagaatgtcttgaccaacctcactgaatttaggatatacatgcat 25706196  T
Q  141 gtatcttggaatcgtacgtggttgaaagta 170  Q
    || ||||||||| | |||||||||||||||    
T  25706197 gtgtcttggaattgaacgtggttgaaagta 25706226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 23124864 - 23124949
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||| |||| |  || |||||||||||||||||||||| |||||||||| |||| | |||| | | ||||||||||||||    
T  23124864 tatgtttttagtactttct--ttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaacatattgtatt 23124949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 4092604 - 4092671
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaa 425  Q
    |||||||| || |||||||| |||||| | ||| |||||||| ||||||| |||||||||||||||||    
T  4092604 tgatgacagagaatcatatgacatttttgctatatttttagtactttttctttgcatttgaagacaaa 4092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 9066119 - 9066181
Alignment:
Q  413 atttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||||||| |||||  ||||| | ||||||||| ||||| ||||||||||||||    
T  9066119 atttgaagacaaataagttgatagatagagaagttgtcaatgtttttaggaacatattgtatt 9066181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 16536829 - 16536751
Alignment:
Q  285 ttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    |||||||||||| |||| ||||||||   |||| ||||||||||||| || |||||||||||||||  |||| ||||||    
T  16536829 ttaaattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatga 16536751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 16628833 - 16628911
Alignment:
Q  285 ttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    |||||||||||| |||| ||||||||   |||| ||||||||||||| || |||||||||||||||  |||| ||||||    
T  16628833 ttaaattcatgtaaattataacttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatga 16628911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 9802057 - 9802000
Alignment:
Q  348 tttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttt 405  Q
    ||||||||| |||||||| ||||||||||| |||||||| || ||||||||| |||||    
T  9802057 tttggggttgtgatgacagagcatcatatgacattttggctacgtttttagtactttt 9802000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 9385465 - 9385537
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||||||||||||| |||||||| |  ||| ||| |||| |||||||| | |||| |||||||||    
T  9385465 ttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 7697107 - 7697065
Alignment:
Q  44 agaattgcttcaatctcatagcaaggtacaatcacatgacgac 86  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||    
T  7697107 agaattgtttcaatctcatagcaaggtataatcatatgacgac 7697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 1255340 - 1255279
Alignment:
Q  414 tttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||||||| ||| | |||||||| ||||||||||||| | ||| | ||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtatt 1255279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 16577522 - 16577449
Alignment:
Q  290 ttcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    ||||||| |||||||||||||   |||| | ||||||||||| || |||||||||||||||  |||| ||||||    
T  16577522 ttcatgtaaattctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatga 16577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Original strand, 16588140 - 16588213
Alignment:
Q  290 ttcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    ||||||| |||||||||||||   |||| | ||||||||||| || |||||||||||||||  |||| ||||||    
T  16588140 ttcatgtaaattctaacttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatga 16588213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 39270239 - 39270280
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  39270239 cttgaggacaagcaacaatttaagtttggggttgtgatgaca 39270280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 475
Target Start/End: Original strand, 11520732 - 11521189
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||    
T  11520732 atgatatataccttgaatgtctgcttataattgcttcaatctcatagcaaggtacaatcatatgacgactagagtgtggcaaatgccttgaccagtccca 11520831  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
    || ||||||| ||| |||||| |||||||| |||| ||  |||||||||||||||||||||| |||||||||||| | | ||| ||| | ||||||||||    
T  11520832 ctagatttagaagatacatacgtgtatctttgaattgtttgtggttgaaagtaagagtatccactctaagtttgaactggttgtatggatgtggtaagct 11520931  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctatt 317  Q
    |||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||  | |||    
T  11520932 agtcaagtttgatagtgggaggaatgacaatctgagcaaagcctttggaaaggtatgttttattctcttaaattcacgtgaattctaacttctgaccatt 11521031  T
Q  318 gtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttg 417  Q
     || || ||||||| || ||||  ||||||||||| ||| |||||||| ||||||||||  |||||||| |||  ||||| | ||||||| |||||||||    
T  11521032 ttgatgtttgaggacaagcaacggtttaagtttggcgttgtgatgacagagcatcatattacattttggctataattttaatactttttcattgcatttg 11521131  T
Q  418 aagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||| |||||||||||   || ||||| ||||||||||||| | ||||||||||||||    
T  11521132 aagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaacatattgtatt 11521189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 266 - 475
Target Start/End: Original strand, 21017717 - 21017926
Alignment:
Q  266 aaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    ||||| |||||||||||||| |||||||||| | ||||||||||| | ||||||||||||| |||| || |||| ||||||||||| |||| |||| |||    
T  21017717 aaaggcatgttttattcttt-aaattcatgtaatttctaacttcttgttattgtgttgcttaaggacaagcaacgatttaagtttgaggttgtgataaca 21017815  T
Q  366 aagcatcatatgcca--ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaaga 463  Q
     |||||||||||  |  |||| ||||||||||||| | |||||| ||||||||||||| ||||||||||| | |||||||| ||| ||||  ||| | ||    
T  21017816 gagcatcatatgatatttttttgttatgtttttag-tatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgagga 21017914  T
Q  464 acatattgtatt 475  Q
    ||||||| ||||    
T  21017915 acatattatatt 21017926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 458
Target Start/End: Original strand, 12573224 - 12573322
Alignment:
Q  360 atgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||||||    
T  12573224 atgacaaagcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 12573322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 458
Target Start/End: Original strand, 13549688 - 13549786
Alignment:
Q  360 atgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| | ||||| ||||||||||||||||    
T  13549688 atgacaaagcatcatatgacattttggttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggttt 13549786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 1475463 - 1475346
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| ||||||||||| |||||||| |||||||||||| ||||||| |||||||||||| | |||||||||| | |||||||| || |||||||||    
T  1475463 tgatgacatagcatcatatgacattttggctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtt 1475364  T
Q  458 ttaagaacatattgtatt 475  Q
    | | ||| ||||||||||    
T  1475363 tgaggaatatattgtatt 1475346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 280 - 475
Target Start/End: Complemental strand, 8402811 - 8402616
Alignment:
Q  280 ttcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcc 379  Q
    |||| |||||||| ||| ||||||| ||||  || ||| ||||||||||||| || |||| |||||||||||||||| |||||||| |||||||||||      
T  8402811 ttctcttaaattcctgtaaattctatcttcctgcaattttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatgacagagcatcatatgat 8402712  T
Q  380 atttt-ggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| |  |||||||||| |   ||| | |||||||||||| |||||||||||  |||||||||| ||||||||||||| | |||||  |||||||    
T  8402711 attttagactatgttttta-tgtatttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaacaatttgtatt 8402616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 469
Target Start/End: Complemental strand, 25919638 - 25919536
Alignment:
Q  367 agcatcatatgccattt-tggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaac 465  Q
    |||||||||||  |||| |||||||||||||||| | ||| | ||| ||||||||||||||||||||| | ||||| |||||||||||||||| | ||||    
T  25919638 agcatcatatgatatttctggttatgtttttagtacattt-ctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaac 25919540  T
Q  466 atat 469  Q
    ||||    
T  25919539 atat 25919536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 33914745 - 33914628
Alignment:
Q  358 tgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggt 456  Q
    |||||||| ||||||| |||||| ||||   |||||||||||| ||||| | |||||||| |||||||||||||||| | ||| |||| ||||||| |||    
T  33914745 tgatgacagagcatcacatgccactttttactatgtttttagtactttt-ctttgcatttcaagacaaataagatgagagttataggagttgtcaacggt 33914647  T
Q  457 tttaagaacatattgtatt 475  Q
    || | ||||||||||||||    
T  33914646 ttgaggaacatattgtatt 33914628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 29 - 363
Target Start/End: Complemental strand, 5633000 - 5632668
Alignment:
Q  29 cttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagg 128  Q
    ||||||||| | ||||||||||||||||||| || |||||||| ||| |||| ||||||  ||| || ||||| ||||||  |   | || |  ||||||    
T  5633000 cttgaatgtatgtttagaattgcttcaatctaattgcaaggtataattacattacgactgcagtgtgacaaattccttgattatgtctaccgactttagg 5632901  T
Q  129 agacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagt-tt 227  Q
    ||  |||||| ||||||||||||| ||| ||||||||||||| ||||||  ||  ||| ||||  | | ||||||| | |||||||| ||||||  | ||    
T  5632900 aggtacatacgtgtatcttggaattgtaagtggttgaaagtaggagtatattcattaaatttgtcctgtttgcatggaagtggtaagttagtcagatctt 5632801  T
Q  228 gatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttg 327  Q
    || ||| ||| |||||||||||| |||| |   | || || ||||||||  ||  |   ||||| |||| ||||||||||||| || ||| |||||||||    
T  5632800 ga-agttggaagaatgacaatctgagcacaatatccgaaatggtatgttccatcatc--aaattaatgtaaattctaacttcttgccattttgttgcttg 5632704  T
Q  328 aggataatcaacaatttaagtttggggttatgatga 363  Q
     ||| || ||||  ||||||||||||||| ||||||    
T  5632703 gggacaagcaacggtttaagtttggggttgtgatga 5632668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 475
Target Start/End: Original strand, 13911123 - 13911314
Alignment:
Q  284 tttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattt 383  Q
    ||||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||||  ||||||||| ||||| |||||||  || |||| |||  ||||    
T  13911123 tttaaattcatgtaaattctaacttattgctattgtgttactttaggacaagcaacggtttaagtttagggttgtgatgacggagaatcaaatgatattt 13911222  T
Q  384 tggt-tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |  | ||||||||||| |  ||||| ||| |||||||||||| ||||  || |  |||| || ||||||||||||| | |||||||| |||||    
T  13911223 ttttctatgtttttag-taattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtttgaggaacatatggtatt 13911314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 13908349 - 13908465
Alignment:
Q  158 gtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaa 257  Q
    ||||||||||||||||||||| | ||||||  || ||| |||||||| ||| |||||| || |||||| |||| ||  ||||||||||||| | ||||||    
T  13908349 gtggttgaaagtaagagtatcttatctaagcgtgctccacttgcatggaggaggtaagttaatcaagtgtgatggtgagaggaatgacaatatgagcaaa 13908448  T
Q  258 gccttcggaaaggtatgt 275  Q
      ||||| ||||||||||    
T  13908449 -tcttcgaaaaggtatgt 13908465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 25188701 - 25188790
Alignment:
Q  369 catcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||||||||  |||| || ||| |||||| || |||||| |||||||||||||||||||||| |  |||||||||| ||| |||||||||    
T  25188701 catcatatgatatttaggctatatttttacttatttttctttgcatttgaagacaaataagaggtcatttagaggaattgacaatggttt 25188790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 25883035 - 25883152
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| |||||||||||  | ||||| ||| ||| |||| ||||||| ||||||||||||| ||||||||||| | | ||| || ||||||||  ||    
T  25883035 tgatgacagagcatcatatgatactttggctatatttctagtactttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttt 25883134  T
Q  458 ttaagaacatattgtatt 475  Q
    | | ||||||||| ||||    
T  25883135 tgaggaacatattatatt 25883152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 19167056 - 19167145
Alignment:
Q  61 atagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatcttggaa 151  Q
    ||||||||||||| |||  |||||||| ||||  |||||||| | |||||||| | ||||| ||||||||| |||||| |||||| |||||    
T  19167056 atagcaaggtacattcatgtgacgactggagt-gggcaaatgtcatgaccagctctactggctttaggagatacatacgtgtatcatggaa 19167145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 21829264 - 21829198
Alignment:
Q  409 ttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||  |||||||| |  |||||||||| ||||||||||||| | |||||| |||||||    
T  21829264 ttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacattttgtatt 21829198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 16223612 - 16223571
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  16223612 cttgaggacaagcaacaatttaagtttggggttgtgatgaca 16223571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 19912711 - 19912670
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||    
T  19912711 cttgaggataagcaacagtttaagtttggggttttgatgaca 19912670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 454
Target Start/End: Original strand, 15574534 - 15574953
Alignment:
Q  17 aatgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccc 116  Q
    ||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| | | |||| ||| |||||| ||||||||  ||    
T  15574534 aatgatataaaccttgaatgtctatgtataattgcttcaatctcatagcaagatacaatcacatgacaagtagagtgtggtaaatgctttgaccagtgcc 15574633  T
Q  117 actggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagc 216  Q
    ||  | ||||| ||| |||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||  |||||||| ||    
T  15574634 acaagctttagaagatacatatgtgtatcttggaatcatatgtggttgaaagtaagagtatcctctctaagtttgatccacttgcattgaggtggtatgc 15574733  T
Q  217 tagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctat 316  Q
    || |||||||||||||| | ||||| || ||| | |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| | |||||    
T  15574734 tactcaagtttgatagtggtaggaacgaaaattttagcaaagcctccggaaaggcatgttttattcttttaaattcatgtgaattctaactttttgctat 15574833  T
Q  317 tgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcattt 416  Q
    ||||||                  | ||||||||||||||||||||||| | ||||||||| |||||||| ||| || ||||| ||||||| ||||||||    
T  15574834 tgtgtt------------------acttaagtttggggttatgatgacagaacatcatatgacattttggctatcttgttagtactttttctttgcattt 15574915  T
Q  417 gaagacaaataagatgatatttagaggatttgtcaatg 454  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  15574916 gaagacaaataagatgagatttagaggaattgtcaatg 15574953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 41 - 454
Target Start/End: Complemental strand, 12972883 - 12972471
Alignment:
Q  41 tttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacat 140  Q
    |||||||||| ||||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||| | ||| |||||| ||   ||||||||    
T  12972883 tttagaattgattcaatctcatagcaaggtacaatcacatgatgattggagtgtggcaaatgccttgaccagcactact-gatttaagaagaacatacat 12972785  T
Q  141 gtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagtaggagga 240  Q
    ||||||||||||   | || |||||||||||| ||||| ||||||||  ||  || |||||||| | |||||||| ||| ||||| ||| ||| |||  |    
T  12972784 gtatcttggaatttcaagtagttgaaagtaagggtatcttctctaagcctgccccacttgcatggaagtggtaagttagccaagtctgaaagtgggaata 12972685  T
Q  241 atgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaaca 340  Q
       ||||||| || |    || ||||||||||| ||| | | ||| ||||| |||| ||||||||||| | |||||| || ||||| || | || |||||    
T  12972684 gcaacaatcttagaaccatctacggaaaggtatatttcaatttttaaaatttatgtaaattctaacttgttgctattttggtgctttagaagaagcaaca 12972585  T
Q  341 atttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatattta 439  Q
    |||||||||||||||  |||||| | | |||||| ||  | |||||| |||||||||||||  ||||| |||||||||||| ||| ||||| |  |||||    
T  12972584 atttaagtttggggtagtgatgatagaacatcatttgatatttttggctatgtttttagtt-attttctttgcatttgaaggcaactaagaggtcattta 12972486  T
Q  440 gaggatttgtcaatg 454  Q
    ||||| |||||||||    
T  12972485 gaggagttgtcaatg 12972471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 15576613 - 15576429
Alignment:
Q  19 tgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccac 118  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | || |||| || ||||||||||||||||||||||    
T  15576613 tgatatagaccttgaatgtctatttcgaattgcttcaatctcatagtaaggtacaatcacatgatggct-gagtgtgacaaatgccttgaccagccccac 15576515  T
Q  119 tggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatg 204  Q
     || ||||||||  | |||| |||||||||||||  ||  |||||||||||||  ||||| |||||||||||| ||| ||||||||    
T  15576514 cggctttaggaggtatatacgtgtatcttggaattttatttggttgaaagtaattgtatcttctctaagtttgttcctcttgcatg 15576429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 16526924 - 16527093
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    |||||||||||||||||||||| ||||||||||||| ||| | |||| |||||||||||||||||||||| |||| ||  | ||| ||||||||| ||||    
T  16526924 atgatatataccttgaatgtctgtttagaattgctttaatgttatagaaaggtacaatcacatgacgactggagtgtgaaatatgtcttgaccag-ccca 16527022  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagt 188  Q
    |||  |||| |||  |||||  ||||||||| ||| ||| |||||||||| |||||||||| |||||||||    
T  16527023 ctgactttaagaggtacatatgtgtatcttgaaattgtatgtggttgaaattaagagtatcttctctaagt 16527093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 310
Target Start/End: Complemental strand, 17860848 - 17860643
Alignment:
Q  104 cttgaccagccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcat 203  Q
    |||||| ||||||||||   |||||||  |||||  ||||| || |||| ||| ||||||||||||||||||||  |||||||   || |||||||||||    
T  17860848 cttgactagccccactgacattaggaggtacatatgtgtatattagaattgtatgtggttgaaagtaagagtatgttctctaaaaatgttccgcttgcat 17860749  T
Q  204 gaaggtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattct 303  Q
    | | | ||||||||||| |||| ||||  | || ||||| | ||||| ||||||   || ||| |||||||||| |||| ||||||||| ||| ||||||    
T  17860748 ggaagaggtaagctagttaagtctgatgatgggtggaataaaaatctgagcaaaatttttggataggtatgtttcattc-tttaaattcttgtaaattct 17860650  T
Q  304 aacttct 310  Q
    |||||||    
T  17860649 aacttct 17860643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 67 - 430
Target Start/End: Complemental strand, 1756026 - 1755663
Alignment:
Q  67 aggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaa 166  Q
    |||| |||||||||||||| | |||| || |||||| |||||||  ||||||| | |||||||||  ||||  ||||||||||||  | | | || | ||    
T  1756026 aggtgcaatcacatgacgatttgagtgtgacaaatgtcttgaccgaccccacttgttttaggagatgcataagtgtatcttggaaatgaatgcggataaa 1755927  T
Q  167 agtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcg-g 265  Q
    |||| ||||||||||||||||| ||  || |||||||||   ||||||  ||||||||| ||| ||| ||| ||   ||||| || |||    || ||      
T  1755926 agtatgagtatcctctctaagtctgtcccacttgcatgataatggtaaattagtcaagtctgaaagtgggaagagaaacaatatacgcaccatctccgaa 1755827  T
Q  266 aaaggtatgttt-tattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgac 364  Q
    ||||||||||||  ||||  | ||||||||||  |||||||||||| || ||| ||||||| ||||| |   || | ||||||||||||||| |||||||    
T  1755826 aaaggtatgtttcgattc--tgaaattcatgtagattctaacttctcgcaattttgttgctagaggacaggtaatagtttaagtttggggttgtgatgac 1755729  T
Q  365 aaagcatcatatgccat-tttggttatgtttttagttctttttccttgcatttgaagacaaataaga 430  Q
      |||||||||||  || |  ||||||||||||||||  ||||| ||| ||||||||||||||||||    
T  1755728 ggagcatcatatgatatatcaggttatgtttttagtt-attttctttgaatttgaagacaaataaga 1755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 471
Target Start/End: Complemental strand, 13759611 - 13759521
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattg 471  Q
    ||||| || |||||||| | ||||||  ||| ||||||||| ||||||||||| | |||||||| ||||||||||||| | ||||||||||    
T  13759611 ttttgattgtgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattg 13759521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 30355282 - 30355375
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| |||||||||||| ||||| | ||||||||||||  ||||||||||| | |||||| | ||||||||||||| |  |||||||||||||    
T  30355282 ttttggctatgtttttagtacttttac-ttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgataaacatattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 458
Target Start/End: Complemental strand, 14924569 - 14924500
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||||||||| |||| | |||||||||||| ||||||| |||  |||||||||| |||||||||||||    
T  14924569 tatgtttttagttatttt-ctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggttt 14924500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 15998444 - 15998561
Alignment:
Q  359 gatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||| | ||||||||| |||||||| ||||||||| || | ||||| ||||||||||||  |||| | |||| | |||||||| |  || |||||||    
T  15998444 gatgacagatcatcatatgacattttggctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggttt 15998543  T
Q  459 taagaacatattgtattc 476  Q
     | ||| |||||||||||    
T  15998544 gaggaaaatattgtattc 15998561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 32930604 - 32930555
Alignment:
Q  409 ttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||||||    
T  32930604 ttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggttt 32930555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 8322602 - 8322722
Alignment:
Q  30 ttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatg-gcaaatgccttgaccagccccactggatttagg 128  Q
    |||||||||  |||||||||| |||||  ||||||||||||||| |||| |||||||| ||  ||| | ||||| | |||||||||| ||||  ||||||    
T  8322602 ttgaatgtccgtttagaattgtttcaaattcatagcaaggtacattcacgtgacgactgga--atgagaaaatgtcgtgaccagcccaactgactttagg 8322699  T
Q  129 agacacatacatgtatcttggaa 151  Q
    ||   ||||| ||||||||||||    
T  8322700 aggtgcatacgtgtatcttggaa 8322722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 458
Target Start/End: Complemental strand, 26512929 - 26512860
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||||||||| ||||   |||||||||||| ||||||||| |  |||||||||| |||||||||||||    
T  26512929 tatgtttttagttattttgt-ttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggttt 26512860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 458
Target Start/End: Complemental strand, 26518045 - 26517976
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||||||||| ||||   |||||||||||| ||||||||| |  |||||||||| |||||||||||||    
T  26518045 tatgtttttagttattttgt-ttgcatttgaaggcaaataagaggtcatttagaggagttgtcaatggttt 26517976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 22569985 - 22569944
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  22569985 cttgaggacaaacaacaatttaagtttggggttgtgatgaca 22569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 135 - 475
Target Start/End: Complemental strand, 21452221 - 21451882
Alignment:
Q  135 atacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagta 234  Q
    |||| |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||||     
T  21452221 atacgtgtatctttgaattgtatgtggttgaaagtaagagtatcctctctaaatttgatctgcttgcatggaggtggtaacctagtcaagtttgatagtg 21452122  T
Q  235 ggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattctt-ttaaattcatgttaattctaacttctagctattgtgttgcttgaggata 333  Q
    |||||||||| ||||| |||||||||| || |||||||||||| ||| || || |||| |||| ||||||||||||| ||||||||||| |||||||| |    
T  21452121 ggaggaatgaaaatctgagcaaagcctccg-aaaggtatgtttgatttttatttaatttatgtgaattctaacttcttgctattgtgtttcttgaggaca 21452023  T
Q  334 atcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatga 433  Q
    |  || | ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||| | ||||| |||||||||||||||||||||||||    
T  21452022 agtaatagtttaagtttggggttgtgatgacatagcatcatatgacattttggctatgtttttagtacgttttctttgcatttgaagacaaataagatga 21451923  T
Q  434 tatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
     |  |||| || |||||||||| | || ||||||||||||||    
T  21451922 gagatagaagagttgtcaatgg-tataggaacatattgtatt 21451882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 208 - 475
Target Start/End: Original strand, 30675264 - 30675533
Alignment:
Q  208 gtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattctttt-aaattcatgttaattctaac 306  Q
    |||||||| |||| ||||||||| || ||| |||||||||||| ||||||  ||||  | ||||||||  ||||||||| |||||||||| |||| ||||    
T  30675264 gtggtaagttagttaagtttgatggtgggaagaatgacaatctgagcaaaatcttcaaacaggtatgtcctattcttttcaaattcatgtaaattttaac 30675363  T
Q  307 ttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttt 405  Q
    |||| ||||| || ||||||||||| || ||||  |||||||| || ||| |||||||| ||||||||||| || |||| | |||||||||||  |||||    
T  30675364 ttcttgctatagttttgcttgaggacaagcaactgtttaagttcggtgttgtgatgacagagcatcatatgacattttttgctatgtttttagaactttt 30675463  T
Q  406 tccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
       || |||||| ||||||||||||||| | |||||||| ||||||||||||| | ||||||||||||||    
T  30675464 ctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaacatattgtatt 30675533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 23223130 - 23223220
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttga 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||    
T  23223130 atgatatataccttgaatgtctatttagaattgctttaatctcatagcaaggtacaatcacatgacgattggagtgtggcaaatgccttga 23223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 284 - 475
Target Start/End: Original strand, 23223269 - 23223460
Alignment:
Q  284 tttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatg-ccatt 382  Q
    ||||||||||||| |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||||| |||||||  |||||||||||    ||    
T  23223269 tttaaattcatgtaaattctaacttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatgacggagcatcatatgatgttt 23223368  T
Q  383 ttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||| |||||||| ||| | ||||| ||||||||  |||||| |||||||  | |||||||| ||||||||||||| | ||||| ||||||||    
T  23223369 ttggctatgttttaagtac-ttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtttgaggaacacattgtatt 23223460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 8247840 - 8247723
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| ||||||||||| |||||||  |||||||||| | | ||||| ||||||||||||||||||||||||| | ||||||||  | |||||||||    
T  8247840 tgatgacagagcatcatatgacattttgactatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtt 8247741  T
Q  458 ttaagaacatattgtatt 475  Q
    | | ||||||||| ||||    
T  8247740 tgaggaacatattttatt 8247723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 106 - 458
Target Start/End: Complemental strand, 15299304 - 15298952
Alignment:
Q  106 tgaccagccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatga 205  Q
    ||||| |||||||||| ||||||||| | |||  ||||||||||||| | | ||  ||||||||||||||||| ||||||||| ||   ||||||||||     
T  15299304 tgaccggccccactggctttaggagatatatatgtgtatcttggaataggaagtcattgaaagtaagagtatcttctctaagtatgtctcgcttgcatgg 15299205  T
Q  206 aggtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaa 305  Q
    | ||||| ||||| ||||||  |  |||  ||  | | ||||||||||||    ||  |||||||||||||  |   | |||||||||||| ||||||||    
T  15299204 aagtggtgagctattcaagtcggggagtgagaatagtaacaatctaagcacgatctctggaaaggtatgttccaaattcttaaattcatgtaaattctaa 15299105  T
Q  306 cttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccatttt-ggttatgtttttagttcttt 404  Q
    ||||| |||||| | ||||||||||| ||||||| |||||| |||| | || ||||||   | |||||||||  ||||| ||||||||||||| |   ||    
T  15299104 cttcttgctatttttttgcttgaggagaatcaacgatttaaatttgcgattgtgatgatggaacatcatatgatattttaggttatgttttta-tatatt 15299006  T
Q  405 ttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||| ||||||||| || ||||| ||| |  ||||| | || |||||||||||||    
T  15299005 ttctttgcatttgcaggcaaattagaagtcatttacaagagttgtcaatggttt 15298952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 12424098 - 12424022
Alignment:
Q  357 atgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatga 433  Q
    ||||||||| |||||||||||  ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  12424098 atgatgacagagcatcatatgatattttggctatgtttttagtactttttctttgcatttgaagacaaataagatga 12424022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 31313020 - 31313097
Alignment:
Q  28 ccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgcct 105  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||| |||| |||| | |||| ||||||||||||    
T  31313020 ccttgattgtctatttagaattggtttaatctcatagcaaggtacaataacatcacgattggagtgtggcaaatgcct 31313097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 475
Target Start/End: Original strand, 34381639 - 34381757
Alignment:
Q  357 atgatgacaaagcatcatatgccatttt-ggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgg 455  Q
    |||||||||||| |||||||   ||||| ||||||||||||| ||  ||||  |||||||||||| |||||||||||  |||||||||| |||| |||||    
T  34381639 atgatgacaaagtatcatatagtattttaggttatgttttta-ttagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatgg 34381737  T
Q  456 ttttaagaacatattgtatt 475  Q
    ||| ||||||||||| ||||    
T  34381738 tttgaagaacatattatatt 34381757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 11770126 - 11770060
Alignment:
Q  409 ttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||| ||||||||||| | |||||| ||||||||||||||| | ||||||||||||||    
T  11770126 ttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaacatattgtatt 11770060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 24903437 - 24903361
Alignment:
Q  399 ttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||| ||||||||||||||||||| ||||| | |||| ||| ||||||||| ||| | ||||||||||||||    
T  24903437 ttctttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatt 24903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 30781722 - 30781783
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgt 449  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| | |||||||| ||||    
T  30781722 tatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 31313413 - 31313482
Alignment:
Q  287 aaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggtt 356  Q
    |||||||||| |||||||| |||| |||||| |||||| |||||| || ||||| |||||||||||||||    
T  31313413 aaattcatgtaaattctaatttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggtt 31313482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 14397286 - 14397342
Alignment:
Q  56 atctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccag 112  Q
    |||||||||||||||||||||||||||||||   ||| |||||||| ||||||||||    
T  14397286 atctcatagcaaggtacaatcacatgacgacggtagtgtggcaaataccttgaccag 14397342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 50047158 - 50047230
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| ||||||||||||||||||||||||| |  ||||||| ||||||||| ||| |  |||||||||||||    
T  50047158 ttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtatt 50047230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 27754778 - 27754843
Alignment:
Q  21 atatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgac 86  Q
    ||||||| ||||||| ||| |||||||||| |||||| |||||| || |||||||||||| |||||    
T  27754778 atatatatcttgaatttctgtttagaattgtttcaatatcatagtaacgtacaatcacattacgac 27754843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 31313160 - 31313107
Alignment:
Q  27 accttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacat 80  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||||||||| ||||    
T  31313160 accttgattgtctatttagaattgctttaatctcataaccaggtacaataacat 31313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 12810285 - 12810371
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||| ||||| | ||  |||| |||||||||||| ||| |  ||||||| ||||||||||||| | ||||||||||||||    
T  12810285 tatgtttttagtactttt-ctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtatt 12810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 474
Target Start/End: Original strand, 18795158 - 18795229
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtat 474  Q
    ||||| ||||||||||||  |||||||| |  ||||||||||||| |||||||||| | |||||| ||||||    
T  18795158 ttttctttgcatttgaaggaaaataagaggtcatttagaggatttatcaatggtttgaggaacattttgtat 18795229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 475
Target Start/End: Complemental strand, 25266503 - 25266411
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||||||||| | ||||| ||||||||||||||| | ||||| | |  ||||| | ||||||||||| | || |||||||||||||    
T  25266503 ttttggttatgtttttagtac-ttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatattgtatt 25266411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 23519939 - 23519821
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatg--tttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgg 455  Q
    |||||||||||||||||||| | |||||  ||||  |||||||| | ||||| |||| |||||||||||||| ||||| |  ||||  | |||| ||| |    
T  23519939 tgatgacaaagcatcatatgaccttttgactatgtttttttagtac-ttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatag 23519841  T
Q  456 ttttaagaacatattgtatt 475  Q
    ||| | ||||||||||||||    
T  23519840 tttgaggaacatattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 26657453 - 26657525
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| ||||||||||||||||||| | ||| |  ||||||| ||||||||||||| | ||| ||| ||||||    
T  26657453 ttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataatgtatt 26657525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 89 - 460
Target Start/End: Complemental strand, 1697017 - 1696650
Alignment:
Q  89 gagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagt 188  Q
    |||| |||||||||||||||||||||||||||| ||||| ||  |||||  ||||||||||||| ||| |||||||||||||| ||||||||||||||||    
T  1697017 gagtgtggcaaatgccttgaccagccccactggctttagaaggtacatatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcctctctaagt 1696918  T
Q  189 ttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaa 288  Q
    ||| || ||||||||| | |||||| ||||||||||||||| |||  ||||||||||||||| |||||| ||| | ||||||||| ||||||| || |||    
T  1696917 ttgttctgcttgcatggaagtggtatgctagtcaagtttgacagtgagaggaatgacaatctcagcaaa-cctccagaaaggtatattttatt-ttataa 1696820  T
Q  289 attcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggt 387  Q
    |||||||| ||||||||||||| |||| |||||||||||| ||||| ||||| |||||||||| |||| |||||| ||||||||||||| || ||||||     
T  1696819 attcatgtaaattctaacttcttgctactgtgttgcttgaagataagcaacagtttaagtttgaggttgtgatgataaagcatcatatgacatttttggc 1696720  T
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtttta 460  Q
    ||  | |||||| | ||||  || |||||||||||||||||||||| |  || |||| |||||||||||||||    
T  1696719 ta--tatttagtac-ttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggtttta 1696650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 473
Target Start/End: Complemental strand, 1676599 - 1676363
Alignment:
Q  236 gaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataat 335  Q
    ||||| |||||||||||| ||| |||| |||||||||| |||| ||| | ||||||||||| ||||||||||||| |||| |||||||||||| || |      
T  1676599 gaggattgacaatctaagaaaa-cctttggaaaggtatatttttttcctctaaattcatgtaaattctaacttcttgctactgtgttgcttgaagacatg 1676501  T
Q  336 caacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgat 434  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| || |||||||||| ||||| || | ||||| || ||||||||||||||||||||||     
T  1676500 caacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatattttttgtac-ttttctttacatttgaagacaaataagatgaa 1676402  T
Q  435 atttagaggatttgtcaatggttttaagaacatattgta 473  Q
    |  ||||||| ||||||||||||| | ||||||||||||    
T  1676401 agatagaggagttgtcaatggtttgaggaacatattgta 1676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 236 - 473
Target Start/End: Complemental strand, 1683127 - 1682891
Alignment:
Q  236 gaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataat 335  Q
    ||||| |||||||||||| ||| |||| |||||||||| |||| ||| | ||||||||||| ||||||||||||| |||| |||||||||||| || |      
T  1683127 gaggattgacaatctaagaaaa-cctttggaaaggtatatttttttcctctaaattcatgtaaattctaacttcttgctactgtgttgcttgaagacatg 1683029  T
Q  336 caacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgat 434  Q
    ||||| ||||||||||||||| ||||||| |||||||||||| || |||||||||| ||||| || | ||||| || ||||||||||||||||||||||     
T  1683028 caacagtttaagtttggggttgtgatgacgaagcatcatatgacatttttggttatattttttgtac-ttttctttacatttgaagacaaataagatgaa 1682930  T
Q  435 atttagaggatttgtcaatggttttaagaacatattgta 473  Q
    |  ||||||| ||||||||||||| | ||||||||||||    
T  1682929 agatagaggagttgtcaatggtttgaggaacatattgta 1682891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 9783165 - 9783049
Alignment:
Q  359 gatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||| ||||||||||| |||||||  |||||||||||| ||||||| || ||||||||| ||||| |||||| | |||||||| |||||||| ||||    
T  9783165 gatgacagagcatcatatgacattttgcctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagttt 9783066  T
Q  459 taagaacatattgtatt 475  Q
     | ||||||||||||||    
T  9783065 gaggaacatattgtatt 9783049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 27302710 - 27302827
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||||||||||||||  |||||||  |||||||||   |  ||||| ||||||||||||||||||| |||||||  ||||| | ||||||||||||    
T  27302710 tgatgacaaagcatcatataacattttgactatgttttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtt 27302809  T
Q  458 ttaagaacatattgtatt 475  Q
    | | |||||| |||||||    
T  27302810 tgaggaacattttgtatt 27302827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 475
Target Start/End: Complemental strand, 25315414 - 25315297
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgttttt-agttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggt 456  Q
    |||||||  ||||||||||| |||||| ||||||||||| ||| ||||| | || |||||||||| ||||||||||| |  ||||||| ||||||||| |    
T  25315414 tgatgaccgagcatcatatgacattttagttatgttttttagtactttt-ctttacatttgaagataaataagatgagagatagaggagttgtcaatgct 25315316  T
Q  457 tttaagaacatattgtatt 475  Q
    || | ||||||||||||||    
T  25315315 ttgaggaacatattgtatt 25315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 18897968 - 18898040
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| ||||||||||||||||||||| ||| |  |||| |||||||||||||||| | ||||||||||||||    
T  18897968 ttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaaggaacatattgtatt 18898040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 5906872 - 5906786
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||| |||||   ||||||||||||||||| ||||||| | |||||||| ||||||||||||| | ||||||||| ||||    
T  5906872 tatgtttttagtacttttat-ttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatatt 5906786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 475
Target Start/End: Complemental strand, 12111510 - 12111398
Alignment:
Q  361 tgacaaagcatcatatgccattttg-gttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtttt 459  Q
    ||||| ||||||||||| ||||||  |||||||||||||| |||||   ||||||||||||||||| ||||||| | | |||||| |||||||||||||     
T  12111510 tgacagagcatcatatgacattttttgttatgtttttagtacttttat-ttgcatttgaagacaaa-aagatgagaat-agaggagttgtcaatggtttg 12111414  T
Q  460 aagaacatattgtatt 475  Q
    | ||||||||||||||    
T  12111413 aggaacatattgtatt 12111398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 15787910 - 15787860
Alignment:
Q  33 aatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgac 83  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  15787910 aatgtctatttaaaattgattcaatctcatagcaaggtacaatcaaatgac 15787860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 34864450 - 34864374
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||| |||||||||||||| ||||| | ||| ||||||||||||||||||| | | |||||||| |||||||||||||    
T  34864450 tttttgttatgtttttagtactttt-ctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggttt 34864374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 12608365 - 12608264
Alignment:
Q  29 cttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagg 128  Q
    ||||| |||||||||||||||| |||||  | |||||||| |||| |||  |||||||| ||||  |||||||| | |||||| ||| ||||||||||||    
T  12608365 cttgactgtctatttagaattgtttcaaatttatagcaagatacattcatgtgacgactggagt-gggcaaatgtcgtgaccaaccctactggatttagg 12608267  T
Q  129 aga 131  Q
    |||    
T  12608266 aga 12608264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 433
Target Start/End: Original strand, 15192137 - 15192210
Alignment:
Q  360 atgacaaagcatcatatgccattttg-gttatgtttttagttctttttccttgcatttgaagacaaataagatga 433  Q
    |||||| ||||||||||| ||||||  ||||||||||| || ||||| | |||||||||||||||||||||||||    
T  15192137 atgacagagcatcatatgacattttttgttatgtttttcgtactttt-ctttgcatttgaagacaaataagatga 15192210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 22119609 - 22119693
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgta 473  Q
    ||||||||||||| |||| | |||||||||||| ||||| ||| | |||||| |||| ||||||||||||| | ||||| ||||||    
T  22119609 tatgtttttagttatttt-ctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaacaaattgta 22119693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 38656497 - 38656554
Alignment:
Q  298 aattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggt 355  Q
    ||||||||| |||||||||| |||| ||||||||  | ||||||||||||||||||||    
T  38656497 aattctaacatctagctattttgttacttgaggacgaacaacaatttaagtttggggt 38656554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 25096727 - 25096612
Alignment:
Q  29 cttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagg 128  Q
    ||||| ||||| |||||||||| |||||  | ||||||||||||| |||  |||||||| ||||  |||||||| | |||||||||| ||| | ||||||    
T  25096727 cttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagt-gggcaaatgtcgtgaccagccctactagctttagg 25096629  T
Q  129 agacacatacatgtatc 145  Q
    ||  |||||| ||||||    
T  25096628 agttacatacttgtatc 25096612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 5125587 - 5125629
Alignment:
Q  409 ttgcatttgaagacaaataagatgatatttagaggatttgtca 451  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  5125587 ttgcatttgaagacaaataagatgagaattagaggaattgtca 5125629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 22346210 - 22346168
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgacaa 366  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||    
T  22346210 cttgaggataagcaacaatttaagtttcgggttgtgatgacaa 22346168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 31860039 - 31859954
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacat 467  Q
    |||||| ||||||||||||| |||||  ||||||||||||| |||||| | | ||||||||| | |||||||| |||| | ||||||    
T  31860039 ttttggctatgtttttagttatttttt-ttgcatttgaagaaaaataaaaggttatttagagaagttgtcaattgtttgaggaacat 31859954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 16052800 - 16052348
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    |||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |  ||| |||||||||||||||||| |||||    
T  16052800 atgatatatttcttgaatgtctgtttcgaattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaacccca 16052701  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
    || | ||||||||  ||||||  |||||||||||| ||| |||||||||||||||| ||| |||| ||||| || || ||||||||  | ||||||||||    
T  16052700 ctagctttaggaggtacatacgcgtatcttggaattgtatgtggttgaaagtaagaatatactctttaagtctgttcagcttgcatagaagtggtaagct 16052601  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgtt-ttattcttttaaattcatgttaattctaacttctagctat 316  Q
    ||| |||||||||  | ||| || || |||||| ||| ||  || || ||| ||||||| |||||| ||||||||||||| ||||||||||||| |||||    
T  16052600 agttaagtttgatgatgggaagagtggcaatctgagccaaatctccgaaaaagtatgttcttattc-tttaaattcatgtaaattctaacttcttgctat 16052502  T
Q  317 tgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatt 415  Q
    |||| |||   |||| || | | | ||||||||| ||||| |||||||  |||||||||||  | |||||| |||||||||||| | ||||  |||||||    
T  16052501 tgtgctgcaaaaggacaaacgagagtttaagtttagggttgtgatgacggagcatcatatgatatttttggctatgtttttagtac-ttttatttgcatt 16052403  T
Q  416 tgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatatt 470  Q
    ||| ||||||||| |||| | |||||||| ||||||||||||| || ||||||||    
T  16052402 tgaggacaaataaaatgagagttagaggagttgtcaatggtttgaataacatatt 16052348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 28901860 - 28901406
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    |||||||||||||| || ||||||||||||| ||||||||||| ||||||| |||||||||||||||||    |  || ||||| ||||||||| |||||    
T  28901860 atgatatataccttaaaagtctatttagaat-gcttcaatctcgtagcaagatacaatcacatgacgacaaacgagtgacaaattccttgaccaacccca 28901762  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
     ||| ||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||   ||||||| | ||||||||||    
T  28901761 atggttttaggagatacatacgtgtatcttggaattgtatgtggttgaaagtaagagtatcttctctaagcttgttctagttgcatgtatgtggtaagct 28901662  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctatt 317  Q
    |||||||| |||||||  ||||||||||||||| || |||  ||   ||||| ||||||| |||| ||||||||||||| ||||||||||||| |||| |    
T  28901661 agtcaagtatgatagtgagaggaatgacaatcttag-aaaatctctagaaagatatgtttcattc-tttaaattcatgtaaattctaacttcttgctact 28901564  T
Q  318 gtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcattt 416  Q
    |||||||||||| | || |||| ||||||||||   ||| ||||     |||||||||||  | |||||| |||| ||||| | | ||||| ||||||||    
T  28901563 gtgttgcttgagaacaagcaacgatttaagtttctagttgtgatattggagcatcatatgaaatttttggctatgcttttaatac-ttttctttgcattt 28901465  T
Q  417 gaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||| ||||||||| ||| |  ||||||| ||||||||||||| | ||||||||||||||    
T  28901464 gaatacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtatt 28901406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 22895055 - 22894646
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    |||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||| | ||| ||| |||| |||||||||||||||| |||| ||    
T  22895055 atgatatataccctgaatgtctgtttagaatggcttcaatctcatagaaaggtacaatcatacgacaactggagtgtggcaaatgccttgactagcctca 22894956  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
    || | ||||||||| |||||| ||| ||||||||| ||| ||||||||||| |  |||||  ||||||||  || |||||||| ||| | || | |||||    
T  22894955 ctagctttaggagatacatacgtgtgtcttggaattgtatgtggttgaaagaagaagtatattctctaagcatgttccgcttgtatggaagtagaaagct 22894856  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctatt 317  Q
    |||||||| ||||  | |||||||  ||| |   ||||||  |||||||||||||||||| |||  |||||||||| || |||| ||| |||| ||||||    
T  22894855 agtcaagtatgatgctgggaggaagtacagttcgagcaaa-tcttcggaaaggtatgtttcatt-atttaaattcacgtaaattataatttcttgctatt 22894758  T
Q  318 gtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcattt 416  Q
    ||||| |||||||| ||   ||| |||||||||| | || |||||||| ||||||||||| || |||| | |||||||||||| | ||||| | ||||||    
T  22894757 gtgtttcttgaggacaagggacagtttaagtttgagattgtgatgacagagcatcatatgacatttttaggtatgtttttagtac-ttttcttcgcattt 22894659  T
Q  417 gaagacaaataag 429  Q
    |||| ||||||||    
T  22894658 gaagccaaataag 22894646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 342 - 454
Target Start/End: Complemental strand, 13082136 - 13082024
Alignment:
Q  342 tttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttaga 441  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| | |||||    
T  13082136 tttaagtttggggttgtgatgacaaaacatcatatgacattttgattatgtttttagtactttttctttgcatttgaagacaaataagatgagagttaga 13082037  T
Q  442 ggatttgtcaatg 454  Q
    ||| |||||||||    
T  13082036 ggagttgtcaatg 13082024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 475
Target Start/End: Original strand, 24119938 - 24120280
Alignment:
Q  133 acatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatag 232  Q
    |||||| |||||||||||||  || || ||| |||||||||||||| ||||| ||| || || ||||||||| | ||||||||||||| ||   || | |    
T  24119938 acatacgtgtatcttggaattatatgtcgtttaaagtaagagtatcttctcttagtctgttctgcttgcatggaagtggtaagctagttaaacctgttgg 24120037  T
Q  233 taggaggaatgacaatctaagcaaagccttcggaaaggtatgttt-tattcttttaaattcatgttaattctaacttctagctattgtgttgcttgagga 331  Q
    | | | || ||||||||| ||| ||  || |  ||| |||||||| |||||||| |||||||||| ||| ||||||| | |||||||||||| |||||||    
T  24120038 tggaaagagtgacaatctgagccaaatctccaaaaatgtatgtttatattcttt-aaattcatgtaaatcctaacttattgctattgtgttgattgagga 24120136  T
Q  332 taatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataaga 430  Q
     || ||||| ||||  || |||||| ||||||| || |||||||||  | |||| | |||||||||||| | ||||| ||||||||||||| ||||||||    
T  24120137 caagcaacattttattttgggggttgtgatgacgaatcatcatatgatattttttgctatgtttttagtac-ttttctttgcatttgaagagaaataaga 24120235  T
Q  431 tgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||| | |||||||| ||||||| ||||| | ||| ||||||||||    
T  24120236 tgagagttagaggagttgtcaacggtttgaggaatatattgtatt 24120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 16054226 - 16054343
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| ||||||||||| |||||||| ||||| |||||| ||||||| ||||||||||||||||||||||| | | |||||||| ||||||||| ||    
T  16054226 tgatgacagagcatcatatgacattttggctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatt 16054325  T
Q  458 ttaagaacatattgtatt 475  Q
    | | |||||| |||||||    
T  16054326 taaggaacattttgtatt 16054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 475
Target Start/End: Complemental strand, 5570566 - 5570207
Alignment:
Q  122 atttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtc 221  Q
    |||||||||| | |||| ||||||||| ||| ||| |||||||||||||| |||||| | | ||||| ||   ||||||| ||   |||||||||||||     
T  5570566 atttaggagatatatacgtgtatcttgaaattgtatgtggttgaaagtaatagtatctttt-taagtctgtatcgcttgcgtggtagtggtaagctagtt 5570468  T
Q  222 aagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttt-tattcttttaaattcatgttaattctaacttctagctattgtg 320  Q
    |||   | | || |||  | ||||||||| ||||||  ||| |||||||||||||| |||||||| |||||||||| || | ||||||||   |||||||    
T  5570467 aagcacggtggtgggaaaagtgacaatctcagcaaaatctttggaaaggtatgtttctattcttt-aaattcatgtaaaatataacttcttattattgtg 5570369  T
Q  321 ttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtt-------tttagttctttttccttgca 413  Q
    ||| ||||| | || ||||||||||||||||||||| |||| ||  |||||||||||  ||||||  ||||||       |||  || |||||  |||||    
T  5570368 ttgtttgagtacaagcaacaatttaagtttggggttgtgataacggagcatcatatgatattttgactatgtttttcaactttttttttttttttttgca 5570269  T
Q  414 tttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||| ||||||||||| ||||  |||| ||||||||  ||| | ||||||||||||||    
T  5570268 tttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtatt 5570207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 356 - 456
Target Start/End: Complemental strand, 29047501 - 29047401
Alignment:
Q  356 tatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgg 455  Q
    |||||||||| |||||||||||  | ||||| ||| || ||||| ||||||| ||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  29047501 tatgatgacagagcatcatatgataatttggctatattattagtactttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatgg 29047402  T
Q  456 t 456  Q
    |    
T  29047401 t 29047401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 12755800 - 12756001
Alignment:
Q  27 accttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggattta 126  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||| || ||||||| |  | | || ||||||  ||||||| | ||||| | ||||    
T  12755800 accttgaatgtctgtttagaattcctttaatcctatagcaaggtacaaccatatgacgaatgaaatgtgacaaatgttttgaccaactccactagcttta 12755899  T
Q  127 ggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtt 226  Q
     |||| |||||  | ||||||||||| |||   ||||||||||||||||||| ||||||||  ||  || |||||||| | |||||||| || | |||||    
T  12755900 tgagatacatatgtatatcttggaattgtaaccggttgaaagtaagagtatcttctctaagaatgtcccacttgcatggaagtggtaagttaattaagtt 12755999  T
Q  227 tg 228  Q
    ||    
T  12756000 tg 12756001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 403 - 475
Target Start/End: Complemental strand, 14977245 - 14977173
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| |||||||| |||||||||||||||| | |||||||| ||||||||||||| | ||||||||||||||    
T  14977245 ttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtatt 14977173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 12956452 - 12956538
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||| ||||| | ||||||||||||| ||||||||||| | |||||||| ||||||||||||| | ||| ||||||||||    
T  12956452 tatgtttttagtactttt-ctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtatt 12956538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 26882340 - 26882457
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| || |||||||| ||| |||| |||||||||||| ||||||| | ||| | |||||||||||| |||| ||||| |||| ||| ||||||||    
T  26882340 tgatgacagagtatcatatgacatcttggctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtt 26882439  T
Q  458 ttaagaacatattgtatt 475  Q
    | | || |||| ||||||    
T  26882440 taaggagcataatgtatt 26882457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 32239243 - 32239336
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| |||||||||||  ||||| | || |||||||||| | ||||||| ||| |||||||| ||||||||||||| |  |||||||||||||    
T  32239243 ttttggctatgtttttagcactttt-ctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtatt 32239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 17099875 - 17099990
Alignment:
Q  29 cttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagg 128  Q
    ||||| ||||| |||||||||| |||||  | ||||||||||||| |||  |||||||| ||||  | ||||||   |||||||||| ||||| ||||||    
T  17099875 cttgattgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactggagt-ggacaaatggtgtgaccagccctactggctttagg 17099973  T
Q  129 agacacatacatgtatc 145  Q
    ||| |||||| ||||||    
T  17099974 agatacatacgtgtatc 17099990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 458
Target Start/End: Original strand, 29291629 - 29291803
Alignment:
Q  286 taaattcatgttaattctaacttctagctattgtgttgctt--gaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattt 383  Q
    ||||||||||| | ||||||||| | | |||| ||||| ||  |||||||| |||| ||||||||||| ||||||||| ||  | |||||||||  ||||    
T  29291629 taaattcatgtaagttctaactttttgatattttgttgattttgaggataagcaacgatttaagtttgaggttatgattacggaacatcatatgatattt 29291728  T
Q  384 t-ggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    | || ||||||||| |||  ||||| || ||||||||| ||||| ||| |  || ||||||| || ||||||||||    
T  29291729 taggctatgttttttgtt-attttcttttcatttgaaggcaaattagaagtcatatagaggagttatcaatggttt 29291803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 29765357 - 29765398
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  29765357 cttgaggacaagcaacaatttaagtttggggttgtgatgaca 29765398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 25227655 - 25227572
Alignment:
Q  61 atagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatc 145  Q
    ||||||||||||| |||  |||||||| ||||  || ||||| | |||||| ||| ||||||||||||||| |||||| ||||||    
T  25227655 atagcaaggtacattcatgtgacgactggagtg-ggaaaatgtcgtgaccaaccctactggatttaggagatacatacgtgtatc 25227572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 31436463 - 31436507
Alignment:
Q  410 tgcatttgaagacaaataagatgatatttagaggatttgtcaatg 454  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||    
T  31436463 tgcatttgaaggcaaataagatgtaatttagaggagttgtcaatg 31436507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 17027128 - 17027572
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccca 117  Q
    |||||| ||||||||| ||||| |||| |||||||| ||| |||||| |||| ||||||||||||||||| ||||||| ||||||| |||| ||||||||    
T  17027128 atgataaataccttgagtgtctgtttataattgcttaaatgtcataggaaggaacaatcacatgacgactggagtatgacaaatgcattgatcagcccca 17027227  T
Q  118 ctggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagct 217  Q
    || | ||||||||  |||||||||||||||||||| |||||||||||||| |||||||||| ||||||| | || |||||||||||| | ||  ||||||    
T  17027228 ctagctttaggaggtacatacatgtatcttggaattgtacgtggttgaaaataagagtatcttctctaactgtgttccgcttgcatggatgttataagct 17027327  T
Q  218 agtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctatt 317  Q
    ||| |||| || | |         ||||||||||||||||   |    ||||||||| | ||||||||||||||||||| ||||||||||| | |||| |    
T  17027328 agttaagtctggtgg---------tgacaatctaagcaaaatgtcttaaaaggtatgctatattcttttaaattcatgtaaattctaactttttgctaat 17027418  T
Q  318 gtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcattt 416  Q
    ||||||||||||||||| |||  | |||||||||||||| ||| ||   ||||||||||| || |||||| |||||||||||| | ||||| ||||||||    
T  17027419 gtgttgcttgaggataagcaatgacttaagtttggggttgtgacgagggagcatcatatgacatttttggctatgtttttagtac-ttttctttgcattt 17027517  T
Q  417 gaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattg 471  Q
     ||||||| |||||||| | |||||||  | ||||| ||||| | ||||||||||    
T  17027518 aaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaacatattg 17027572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 22754547 - 22754955
Alignment:
Q  17 aatgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccc 116  Q
    |||||| ||||||||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||     
T  22754547 aatgatgtataccttgaatgcctgtttagaatttcttcaatcttatagcaaggtacaatcacatgacgactggagtgtggcaaatgctttgaccaaccct 22754646  T
Q  117 actggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagc 216  Q
    | ||  ||||||||  |||||| |||||||||||||  ||  ||||||||||||||| |||||||||||||  ||||| ||||||||| |||||||||||    
T  22754647 attgactttaggaggtacatacgtgtatcttggaatattatatggttgaaagtaagaatatcctctctaag--tgatctgcttgcatggaggtggtaagc 22754744  T
Q  217 tagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattctt-ttaaattcatgttaattctaacttctagcta 315  Q
    ||| || ||||||||||| ||| ||||||||| | || ||||||| |||| |||| || || ||| || |||||||||| | | ||||||||| | ||||    
T  22754745 tagccacgtttgatagtaagagaaatgacaatttgagtaaagcctccggagaggtctgcttgatttttcttaaattcatatgagttctaactttttgcta 22754844  T
Q  316 ttgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatt 415  Q
    |||||||||||| ||| ||  |||| |||||||||||| || | |||| | ||      ||| |||||||| |||||||||||| |  |||| |||||||    
T  22754845 ttgtgttgcttgtggacaagaaacattttaagtttgggtttcttatgatagag------atgacattttggatatgtttttagtac-gtttctttgcatt 22754937  T
Q  416 tgaagacaaataagatga 433  Q
    | ||||||||||||||||    
T  22754938 taaagacaaataagatga 22754955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 475
Target Start/End: Original strand, 24841359 - 24841802
Alignment:
Q  21 atatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactg 120  Q
    ||||||| ||||||||| | |||||||||||||||||||||||| ||||| ||||||||||| ||||  ||| || ||||| |||||||||||||||||     
T  24841359 atatatatcttgaatgtttgtttagaattgcttcaatctcatagtaaggtccaatcacatgatgactaaagtgtgacaaatcccttgaccagccccact- 24841457  T
Q  121 gatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagt 220  Q
      |||||| || |||||  ||||||||||||| ||| ||||||||||||||||||||| || ||||| ||  ||  |||||||| | |||||||||||||    
T  24841458 tctttaggtgatacatatgtgtatcttggaattgtatgtggttgaaagtaagagtatcttccctaagcttcttctacttgcatggaagtggtaagctagt 24841557  T
Q  221 caagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtg 320  Q
    |||||  ||||||  || |||| ||||||| ||||||  || ||| || |||||||||         |||| |||| ||||||||||||| | |||||||    
T  24841558 caagtcagatagtgagaagaataacaatctgagcaaa-tctccgggaatgtatgtttt---------aattaatgtaaattctaacttcttgttattgtg 24841647  T
Q  321 ttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaa 419  Q
    || |||||||| || ||||| | || || ||||||| |||||||| ||||||||||| || |||| | |||||||||||| | | ||| |||||||||||    
T  24841648 tttcttgaggacaagcaacagtgtacgtatggggttgtgatgacagagcatcatatgacattttttgctatgtttttagtac-tattctttgcatttgaa 24841746  T
Q  420 gacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||| | | |  ||||||| || |||||||||| | ||||||||||||||    
T  24841747 gacaaataagtttagagatagaggagttttcaatggtttgaggaacatattgtatt 24841802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 11274873 - 11274612
Alignment:
Q  17 aatgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagcccc 116  Q
    ||||||||||||||||||||| | ||| |||| |||||||| |||||| |||||| ||||||||||| ||| |||| || |||| |||||||||| ||||    
T  11274873 aatgatatataccttgaatgtttgtttggaatcgcttcaatttcatagtaaggtaaaatcacatgacaactagagtgtgacaaacgccttgaccatcccc 11274774  T
Q  117 actggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagc 216  Q
     |||| ||||||||| || ||  ||||||||||||| ||| |||||||||||||| |||||| |||| |||| || || ||||||||||| |  ||||||    
T  11274773 -ctggctttaggagatacctatgtgtatcttggaattgtatgtggttgaaagtaaaagtatcttctcaaagtctgttctgcttgcatgaaagcagtaagc 11274675  T
Q  217 tagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgtttta 279  Q
    |||| |||| |||| || | | |||||||||| | ||||||  ||  ||||||||||||||||    
T  11274674 tagttaagtctgatggtggaaagaatgacaatatgagcaaaatctctggaaaggtatgtttta 11274612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 23125460 - 23125153
Alignment:
Q  21 atatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactg 120  Q
    |||| |||||||| ||| | |||||||||| |||||||||| ||||| ||||||||||||||| ||| |||| |||||| | ||||||||| |||||||     
T  23125460 atatgtaccttgagtgtatgtttagaattgtttcaatctcacagcaaagtacaatcacatgacaactggagtgtggcaagttccttgaccaaccccacta 23125361  T
Q  121 gatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaa-gagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctag 219  Q
      |||| |||  |||||  ||||||||||||| ||| ||| ||| ||||||  |||||| |||||||| |||  ||||||||||| | |||||||| |||    
T  23125360 tctttatgaggtacatatgtgtatcttggaattgtaagtgattggaagtaataagtatcttctctaagcttgtcccgcttgcatggaagtggtaagttag 23125261  T
Q  220 tcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgt 319  Q
    |||||| ||  ||| ||| |||||||||| | |||| |  || || |||||||||||  | || |  |||||||||| ||||| ||||||| ||| || |    
T  23125260 tcaagtctggaagtgggaagaatgacaatatgagcacaatctccgaaaaggtatgttcca-tcatcaaaattcatgtaaattccaacttcttgctgtttt 23125162  T
Q  320 gttgcttga 328  Q
    |||||||||    
T  23125161 gttgcttga 23125153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 19331163 - 19331367
Alignment:
Q  19 tgatatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccac 118  Q
    |||||| || ||||||||||| | || |||||||||||||||| ||||||||| |||||||||||| || |||| || ||||||| || |||| ||  ||    
T  19331163 tgatatgtatcttgaatgtctctatataattgcttcaatctcaaagcaaggtagaatcacatgacggctggagtgtgacaaatgctttcaccaaccatac 19331262  T
Q  119 tggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagcta 218  Q
    ||  ||||||||  |||||  ||||| ||||||| ||| |||||||||||||||| |||  |||||||   ||  |||||||||||||  ||||||| ||    
T  19331263 tgattttaggaggtacatatgtgtattttggaattgtaagtggttgaaagtaagaatatattctctaaacctgtcccgcttgcatgaaattggtaagtta 19331362  T
Q  219 gtcaa 223  Q
    |||||    
T  19331363 gtcaa 19331367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 380 - 475
Target Start/End: Original strand, 24517309 - 24517403
Alignment:
Q  380 attttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| |||||||||||||||||||  | ||||||||||||||||||||||||| | |||||||| ||||||||||||| | ||||||||||||||    
T  24517309 attttagttatgtttttagttctttg-ctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 362 - 475
Target Start/End: Complemental strand, 12340191 - 12340080
Alignment:
Q  362 gacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaa 461  Q
    |||| ||||||||||| |||||||| ||||||||||||   ||||| ||||||||||||||||||||| ||| | |||||||| ||||||||||||| |     
T  12340191 gacagagcatcatatgacattttggctatgtttttagta--ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgag 12340094  T
Q  462 gaacatattgtatt 475  Q
    ||||||||| ||||    
T  12340093 gaacatattatatt 12340080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 475
Target Start/End: Complemental strand, 25594851 - 25594758
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| |||||||||||| |||||   ||||||||||||||||||||||||| | ||||||||||| |||||||||| | ||||||||||||||    
T  25594851 ttttggctatgtttttagtacttttat-ttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaacatattgtatt 25594758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 17382187 - 17382101
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||| |||||| ||||||  ||||||||||||||||||||||||| | |||||||| ||||||||||||| | ||||||||||||||    
T  17382187 tatgtgtttagtactttttt-ttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtatt 17382101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 358 - 433
Target Start/End: Original strand, 22229741 - 22229816
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatg-tttttagttctttttccttgcatttgaagacaaataagatga 433  Q
    |||||||| ||||||||||| |||||||| |||| |||||||| | ||||| |||||||||||||||||||||||||    
T  22229741 tgatgacagagcatcatatgtcattttggctatgttttttagtac-ttttctttgcatttgaagacaaataagatga 22229816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 15205577 - 15205692
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| |||||||||||  ||||||  ||||||||||||  |||||  |||||||| || ||||||||||||  | ||| |||| |||||| |||||    
T  15205577 tgatgacagagcatcatatgatattttgactatgtttttagtattttttatttgcatttaaatacaaataagatg--agttaaaggagttgtcagtggtt 15205674  T
Q  458 ttaagaacatattgtatt 475  Q
    | | ||||||||||||||    
T  15205675 tgaggaacatattgtatt 15205692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 380 - 458
Target Start/End: Original strand, 30072133 - 30072210
Alignment:
Q  380 attttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    ||||||| |||||||| ||| ||||| | ||| ||||||||||||||||||||| | |||||||| |||||||||||||    
T  30072133 attttggctatgttttaagtactttt-ctttggatttgaagacaaataagatgagaattagaggagttgtcaatggttt 30072210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 18222480 - 18222542
Alignment:
Q  413 atttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||||||||||| | ||||| || ||||||||||||| |  |||||||||||||    
T  18222480 atttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtatt 18222542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 12029485 - 12029571
Alignment:
Q  291 tcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatg 377  Q
    |||||| |||||| ||||||  ||||| |||| |||||||| ||  || | ||||||||||||||| |||||||  |||||||||||    
T  12029485 tcatgtaaattcttacttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatgaccgagcatcatatg 12029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 22967980 - 22967910
Alignment:
Q  403 ttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgta 473  Q
    ||||| |||||| | |||||||||||||||   ||||||||| |||| |||||||| | ||||||||||||    
T  22967980 ttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttgaggaacatattgta 22967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 24846239 - 24846293
Alignment:
Q  404 tttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||| |||||||||||||||||||||| |  ||||||||||||| || |||||||    
T  24846239 tttctttgcatttgaagacaaataagaggtcatttagaggatttttccatggttt 24846293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 450
Target Start/End: Complemental strand, 25075417 - 25075328
Alignment:
Q  360 atgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtc 450  Q
    |||||||| ||||||||  |||||||| ||||||||||| |  ||||| ||||| |||||||||||||| || | | |||||||| |||||    
T  25075417 atgacaaaacatcatattacattttggctatgtttttag-taattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 450
Target Start/End: Complemental strand, 25133386 - 25133297
Alignment:
Q  360 atgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtc 450  Q
    |||||||| ||||||||  |||||||| ||||||||||| |  ||||| ||||| |||||||||||||| || | | |||||||| |||||    
T  25133386 atgacaaaacatcatattacattttggctatgtttttag-taattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 34489282 - 34489162
Alignment:
Q  30 ttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagga 129  Q
    |||| ||||| ||||||||||  |||| || | ||||||||||| |||| |||||||| ||||  || ||||| | |||| | ||| ||||| ||||||     
T  34489282 ttgactgtctgtttagaattgtctcaaacttacagcaaggtacattcacgtgacgactggagt-gggaaaatgtcgtgacaaaccctactggttttaggc 34489184  T
Q  130 gacacatacatgtatcttggaa 151  Q
    || ||||||||||||| |||||    
T  34489183 gatacatacatgtatcatggaa 34489162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 22644112 - 22644052
Alignment:
Q  292 catgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttgg 352  Q
    ||||| ||||| ||||||| || ||| |||||||||||||||| ||||  |||||||||||    
T  22644112 catgtaaattccaacttcttgccattttgttgcttgaggataagcaacggtttaagtttgg 22644052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 26070430 - 26070501
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaat 453  Q
    |||||| |||||||||||||  ||||| |||||||| ||| ||||||||| |  |||||||||| ||||||||    
T  26070430 ttttggctatgtttttagtt-attttctttgcattttaaggcaaataagaggtcatttagaggagttgtcaat 26070501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 140 - 475
Target Start/End: Complemental strand, 28278820 - 28278489
Alignment:
Q  140 tgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagtcaagtttgatagtaggagg 239  Q
    |||||||||||||  || |||||| |||||||||||||| ||||||| |||| | |||||||||| | ||||||| |||||||| | ||||||| ||||     
T  28278820 tgtatcttggaattctatgtggttaaaagtaagagtatcttctctaactttgtttcgcttgcatggaagtggtaaactagtcaaatctgatagtgggag- 28278722  T
Q  240 aatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaac 339  Q
    ||||||||| | |||||| |  | | ||||||||| | |||| ||| |||||||||| ||||||||||||| |||||||||||||||||||| || ||||    
T  28278721 aatgacaatatgagcaaatctctag-aaaggtatgctctattattt-aaattcatgtaaattctaacttcttgctattgtgttgcttgaggacaagcaac 28278624  T
Q  340 aatttaagtttggggttatgatgacaaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatattt 438  Q
    | ||||||||| ||||| |||||||| |||||||||||  | |||| | |||| ||||||| | ||||| |||||||||||| ||||||||| || | ||    
T  28278623 actttaagttttgggttgtgatgacagagcatcatatgatattttttgctatg-ttttagtac-ttttctttgcatttgaaggcaaataagaagagagtt 28278526  T
Q  439 agaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||| |||||||||| ||||||||| ||||||    
T  28278525 agaggatttctcaatggtttgaagaacatagtgtatt 28278489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 358 - 471
Target Start/End: Original strand, 25473969 - 25474082
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| ||||||||||| |||||||| |||||||||||| | ||||  || |||||||||||||||||||||| | |||||||| |||||||| |||    
T  25473969 tgatgacagagcatcatatgacattttggctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaattgtt 25474068  T
Q  458 ttaagaacatattg 471  Q
    | | ||||||||||    
T  25474069 tgaggaacatattg 25474082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 35707735 - 35707852
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| ||||||||||| |||||||  |||||||||||| ||||||| ||| ||||||||||||||||||||| | |||||| | ||||||||||||    
T  35707735 tgatgacagagcatcatatgacattttgactatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtt 35707834  T
Q  458 ttaagaacatattgtatt 475  Q
    | |  ||||| |||||||    
T  35707835 tgagaaacatgttgtatt 35707852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 22389271 - 22389069
Alignment:
Q  21 atatataccttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactg 120  Q
    |||| |||||||||||| | |||| |||| ||||||| ||||||||||||||| ||||||||||||| | || |||||||| |||||||||||| ||||     
T  22389271 atatgtaccttgaatgtttgtttataattacttcaatttcatagcaaggtacagtcacatgacgact-gggtgtggcaaataccttgaccagcctcacta 22389173  T
Q  121 gatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggtaagctagt 220  Q
      ||||||||  |||  | |||| |||||||| ||| |||| | || ||||||||||| |||| |||   | |||||||||||| | |||||||| ||||    
T  22389172 cctttaggaggtacaatcctgtagcttggaattgtaagtgg-tcaacgtaagagtatcttctcaaagcacgttccgcttgcatggatgtggtaagttagt 22389074  T
Q  221 caagt 225  Q
    |||||    
T  22389073 caagt 22389069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 354
Target Start/End: Complemental strand, 17415597 - 17415357
Alignment:
Q  113 ccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatgaaggtggt 212  Q
    ||||||||  ||||||||  |||||| ||||||||||||| |    | |||||||||||||||||| | |||||||||| ||| ||||| || | |||||    
T  17415597 ccccactgactttaggaggtacatacgtgtatcttggaattgggaatagttgaaagtaagagtatcttttctaagtttgttccacttgcgtggaagtggt 17415498  T
Q  213 aagctagtcaagtttgatagtaggaggaatgacaatctaagcaaagccttcggaaaggtatgttttattcttttaaattcatgttaattctaacttctag 312  Q
    |||||||| ||||||   ||| ||| ||   ||||||||||||     | || ||||||||| |  | | |||||||||||||| |||| ||||||||||    
T  17415497 aagctagttaagttttggagtgggaagacaaacaatctaagcacgatatccgaaaaggtatgctccaat-ttttaaattcatgtaaattataacttctag 17415399  T
Q  313 ctattgtgttgcttgaggataatcaacaatttaagtttgggg 354  Q
    ||||| | ||||||||| | || |||| ||||||||||||||    
T  17415398 ctattttattgcttgagaacaagcaacgatttaagtttgggg 17415357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 358 - 454
Target Start/End: Original strand, 1733033 - 1733128
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatg 454  Q
    |||| ||||||||||||||| |||||| |||||||||||||| ||||||  || ||||||||||||||| |||||| | |||||||| |||||||||    
T  1733033 tgataacaaagcatcatatgacattttagttatgtttttagtacttttt-ttttcatttgaagacaaatgagatgagagttagaggagttgtcaatg 1733128  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 188
Target Start/End: Original strand, 39730111 - 39730255
Alignment:
Q  46 aattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatc 145  Q
    |||||| |||||||||||| || ||||||||||| || |||| |||| |||||||| |||||||||| | |||||| ||||||||  |||||||||||||    
T  39730111 aattgcatcaatctcatagtaatgtacaatcacacgatgacttgagtgtggcaaataccttgaccag-ctcactggctttaggaggtacatacatgtatc 39730209  T
Q  146 ttggaatcg---tacgtggttgaaagtaagagtatcctctctaagt 188  Q
    ||| ||| |   || || ||||||| ||| |||||| |||||||||    
T  39730210 ttgaaattgtaataagttgttgaaattaaaagtatcttctctaagt 39730255  T

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Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 381 - 475
Target Start/End: Complemental strand, 21505298 - 21505205
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| ||||||||||||  |||||| ||||||||||||||||||||||||| | |||||| | ||||||||||||| | || |||||||||||    
T  21505298 ttttggctatgtttttagta-tttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtttgaggagcatattgtatt 21505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 39730306 - 39730427
Alignment:
Q  285 ttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccatttt 384  Q
    |||||||||| | |||| |||||||| |||||| ||||||||||||| ||  |||| ||||||||||||||| ||||| |  ||||||||||   |||||    
T  39730306 ttaaattcatataaattataacttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatggcggagcatcatataatatttt 39730405  T
Q  385 -ggttatgtttttagttctttt 405  Q
     || ||||||||||||| ||||    
T  39730406 aggctatgtttttagttatttt 39730427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 475
Target Start/End: Complemental strand, 21843139 - 21843068
Alignment:
Q  404 tttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||| ||||||||||||||||||||| ||  |||||||||| ||| ||||||||||| |||||| |||||||    
T  21843139 tttctttgcatttgaagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtatt 21843068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 467
Target Start/End: Complemental strand, 21844766 - 21844703
Alignment:
Q  404 tttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacat 467  Q
    |||| ||||||||||||||||||||| ||  |||||||||| ||||||||||||||| ||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacat 21844703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 29769359 - 29769505
Alignment:
Q  59 tcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccag-ccccactggatttaggagacacatacatgtatcttggaatcgtac 157  Q
    |||||||||||||||| ||||||| |||| |||| || ||||| | || ||||| ||||||||  ||||||||| |||||||||| | ||||||| | |     
T  29769359 tcatagcaaggtacaaacacatgaggactagagtgtgacaaattcatttaccaggccccactgattttaggagatacatacatgtgttttggaattgaat 29769458  T
Q  158 gtggttgaaagtaagagtatcctctctaagtttgatccgcttgcatg 204  Q
    || |||||||||| |||| |  ||| ||||| ||  |||||||||||    
T  29769459 gtagttgaaagtatgagtgtgttctttaagtctgtcccgcttgcatg 29769505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 409 - 475
Target Start/End: Original strand, 30998754 - 30998820
Alignment:
Q  409 ttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||| |||||||||||||||||||| | ||||| || ||||||||||||| | ||||||||||||||    
T  30998754 ttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtatt 30998820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 467
Target Start/End: Complemental strand, 32276769 - 32276587
Alignment:
Q  285 ttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgcca-ttt 383  Q
    |||||||||||| ||  |||| |||| | |||| |||||| | |||| ||  |||  ||||||||||||||| ||||||   | |||||||||  | |||    
T  32276769 ttaaattcatgtaaaccctaagttcttgttattttgttgcgtaaggacaagaaaccgtttaagtttggggttgtgatgaaggaacatcatatggtacttt 32276670  T
Q  384 tggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacat 467  Q
    ||| ||||||||||||| |||| | ||||||||||||  |||||||| |  ||||| ||||  |||||||||||| ||||||||    
T  32276669 tggatatgtttttagttatttt-ctttgcatttgaaggaaaataagaggtcatttaaaggagatgtcaatggtttgaagaacat 32276587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 358 - 458
Target Start/End: Complemental strand, 16593942 - 16593835
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagt-------tctttttccttgcatttgaagacaaataagatgatatttagaggatttgtc 450  Q
    |||||| |||||||||||||  ||||||| ||||||||||||       | |||||  ||||||||||||||||||||||| | | ||| |||| |||||    
T  16593942 tgatgataaagcatcatatgatattttggctatgtttttagtatttttttttttttttttgcatttgaagacaaataagattagagttataggagttgtc 16593843  T
Q  451 aatggttt 458  Q
    ||||||||    
T  16593842 aatggttt 16593835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 25532669 - 25532562
Alignment:
Q  29 cttgaatgtctatttagaattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttagg 128  Q
    ||||| ||||| |||||||||| |||||  | ||||||||||||| |||  |||||||| ||||  |||||||||| || ||| ||| ||||| ||||||    
T  25532669 cttgactgtctgtttagaattgtttcaaatttatagcaaggtacattcatgtgacgactagagt-gggcaaatgccatgtccaaccctactggctttagg 25532571  T
Q  129 agacacata 137  Q
    ||| |||||    
T  25532570 agatacata 25532562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 19949707 - 19949620
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||||| ||||||| ||| ||||||||| |||||| |||| |  | ||||| |||| ||| |||| | ||||||||||||||    
T  19949707 tatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtatt 19949620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Original strand, 24047345 - 24047431
Alignment:
Q  388 tatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    ||||||||||||| ||||   ||||||||||||  |||||||| | ||||||||| | ||||||||||||| | |||||| |||||||    
T  24047345 tatgtttttagttattttat-ttgcatttgaaggaaaataagaggttatttagagaaattgtcaatggtttaaggaacattttgtatt 24047431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 29769588 - 29769639
Alignment:
Q  325 ttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatat 376  Q
    |||||||||| |||||||||  ||||||||||||||||||  ||||||||||    
T  29769588 ttgaggataagcaacaatttttgtttggggttatgatgacggagcatcatat 29769639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 475
Target Start/End: Original strand, 31449824 - 31450006
Alignment:
Q  293 atgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatgacaaagcatcatatgccatttt-ggttatg 391  Q
    |||| |||||| |||||| |||| | |||| |||||||| || ||||| ||||||||||||||| ||||||   || ||| ||||  |||||  | ||||    
T  31449824 atgtaaattctgacttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgatggagtatcttatgatattttaagctatg 31449923  T
Q  392 tttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||||||  ||||  |||||||||||||||| | | | |  |||||||||| ||||  ||||||||| ||| || |||||||    
T  31449924 tttttagtt-attttatttgcatttgaagacaatttataagtcatttagaggagttgtagatggttttaggaatattttgtatt 31450006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 22510821 - 22510887
Alignment:
Q  287 aaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggg 353  Q
    |||||||||| ||||| |||||||  ||||| ||| ||||||||| || ||||| ||||||||||||    
T  22510821 aaattcatgtaaattccaacttctttctattttgtagcttgaggacaagcaacagtttaagtttggg 22510887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Original strand, 25886157 - 25886198
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  25886157 cttgaggacaagcaacaatttaagtttggggttgtgatgaca 25886198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 31261975 - 31262048
Alignment:
Q  402 tttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttttaagaacatattgtatt 475  Q
    |||||| ||||||| |||| |||| ||||||  |||||||||| ||||||||||||| |  ||||| |||||||    
T  31261975 tttttctttgcattagaaggcaaacaagatgtcatttagaggagttgtcaatggtttaacaaacattttgtatt 31262048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 27918236 - 27918160
Alignment:
Q  287 aaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    ||||||| || |||||||||||||  ||| ||| ||| |||| || || ||||||||||||||||||| | ||||||    
T  27918236 aaattcacgtaaattctaacttcttactaatgttttgtttgatgacaagcaacaatttaagtttggggatgtgatga 27918160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 264 - 425
Target Start/End: Complemental strand, 22821 - 22661
Alignment:
Q  264 ggaaaggtatgttttattcttttaaattcatgttaattctaacttctagctattgtgttgcttgaggataatcaacaatttaagtttggggttatgatga 363  Q
    |||||||||||||| ||||||| |||||||||| |||| |||||||| |||||||||||||||||||  || ||||| ||||||||||||||| ||||||    
T  22821 ggaaaggtatgtttcattcttt-aaattcatgtaaattataacttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatga 22723  T
Q  364 caaagcatcatatgcca-ttttggttatgtttttagttctttttccttgcatttgaagacaaa 425  Q
     | | |||||||| ||| |||||| ||||||||| || | ||||  |||||||||||||||||    
T  22722 tagaccatcatataccatttttggctatgttttttgtac-ttttatttgcatttgaagacaaa 22661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 2323 - 2186
Alignment:
Q  46 aattgcttcaatctcatagcaaggtacaatcacatgacgactcgagtatggcaaatgccttgaccagccccactggatttaggagacacatacatgtatc 145  Q
    |||| ||||||| ||||||||| ||||||||||||||||||| |||| |||||||| || | |||| |  |||||| ||||||||  |||||||||| ||    
T  2323 aattacttcaatttcatagcaaagtacaatcacatgacgacttgagtgtggcaaataccgtaaccatctgcactggctttaggaggtacatacatgtgtc 2224  T
Q  146 ttggaatcgtacgtggttgaaagtaagagtatcctctc 183  Q
    ||| | | ||||||||||||||||||||||||| ||||    
T  2223 ttgaatttgtacgtggttgaaagtaagagtatcttctc 2186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 191
Target Start/End: Original strand, 3141 - 3235
Alignment:
Q  97 caaatgccttgaccagccccactggatttaggagacacatacatgtatcttggaatcgtacgtggttgaaagtaagagtatcctctctaagtttg 191  Q
    |||||||||||||||  |||||| |  |||||||| |||||  ||||||||| ||| ||| ||||||||||||||||||||||| ||||||||||    
T  3141 caaatgccttgaccaatcccactagtcttaggagatacatatgtgtatcttgaaattgtatgtggttgaaagtaagagtatcctttctaagtttg 3235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 3084 - 3133
Alignment:
Q  18 atgatatataccttgaatgtctatttagaattgcttcaatctcatagcaa 67  Q
    |||||||||||||| |||||||||||| |||||||||||||||| |||||    
T  3084 atgatatataccttcaatgtctatttataattgcttcaatctcaaagcaa 3133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 446937 - 447054
Alignment:
Q  358 tgatgacaaagcatcatatgccattttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||| |||||||||||  ||||| | |||||||||||| ||||| | || |||||||||||||||||||||| | |  ||||| ||||  ||| ||    
T  446937 tgatgacagagcatcatatgatatttttgctatgtttttagtacttttcctttacatttgaagacaaataagatgagagtctgaggaattgttgatgatt 447036  T
Q  458 ttaagaacatattgtatt 475  Q
    ||| ||||||||||||||    
T  447037 ttaggaacatattgtatt 447054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 475
Target Start/End: Original strand, 6128 - 6245
Alignment:
Q  358 tgatgacaaagcatcatatgccatttt-ggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggt 456  Q
    |||||||| ||||||||||| |||||| || |||||||||||| ||||| | || ||||| || ||||||||||||| | ||| | || || ||||||||    
T  6128 tgatgacatagcatcatatggcatttttggctatgtttttagtactttt-ctttccatttaaacacaaataagatgagagttatatgagttttcaatggt 6226  T
Q  457 tttaagaacatattgtatt 475  Q
    || | ||||||| ||||||    
T  6227 ttgaggaacataatgtatt 6245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Complemental strand, 13230 - 13154
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggttt 458  Q
    |||| |||||||||||||| |||||   || ||| | |||||||||||||||| | ||||||||||| ||||||||||    
T  13230 ttttagttatgtttttagtacttttatttt-catattaagacaaataagatgagagttagaggatttttcaatggttt 13154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 457
Target Start/End: Complemental strand, 8868 - 8793
Alignment:
Q  381 ttttggttatgtttttagttctttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatggtt 457  Q
    |||||||||| |||||||| |||||   || ||||| |||| |||||||||||   |||||||||||||||||||||    
T  8868 ttttggttatttttttagtacttttatttt-cattttaagaaaaataagatgagggttagaggatttgtcaatggtt 8793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 365
Target Start/End: Complemental strand, 38422 - 38381
Alignment:
Q  324 cttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  38422 cttgaggacaagcaacaatttaagtttggggttgtgatgaca 38381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 88403 - 88443
Alignment:
Q  325 ttgaggataatcaacaatttaagtttggggttatgatgaca 365  Q
    ||||||| || ||||||||||||||||||||| ||||||||    
T  88403 ttgaggacaaacaacaatttaagtttggggttgtgatgaca 88443  T

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