View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650_low_3 (Length: 455)
Name: NF5650_low_3
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 9820290 - 9820513
Alignment:
| Q |
7 |
tgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgaggtccatcagtcactggaaaagcaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9820290 |
tgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgagggccatcagtcactggaaaagcaaa |
9820389 |
T |
|
| Q |
107 |
gataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9820390 |
gataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgt |
9820489 |
T |
|
| Q |
207 |
ttcactaacaaatataaacttacc |
230 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
9820490 |
ttcactaacaaatataaacttacc |
9820513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 234 - 445
Target Start/End: Original strand, 9821130 - 9821341
Alignment:
| Q |
234 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
333 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
|
| Q |
334 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
433 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
|
| Q |
434 |
atttcgttcatc |
445 |
Q |
| |
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|||||||||||| |
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| T |
9821330 |
atttcgttcatc |
9821341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 79 - 230
Target Start/End: Original strand, 38873994 - 38874145
Alignment:
| Q |
79 |
gaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagt |
178 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||| |
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| T |
38873994 |
gagggccatcagtcactggaaaagtaaagataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagt |
38874093 |
T |
|
| Q |
179 |
aatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
230 |
Q |
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|
||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
38874094 |
aatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
234 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
333 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 38873850 - 38873924
Alignment:
| Q |
7 |
tgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
81 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38873850 |
tgttccttccacattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38873924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 38875620 - 38875710
Alignment:
| Q |
355 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatc |
445 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||||| |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatc |
38875710 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
234 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
|
| Q |
334 |
aa-gtcaactagtaaagtaa |
352 |
Q |
| |
|
|| | |||||||||||||| |
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| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 38694353 - 38694279
Alignment:
| Q |
7 |
tgttccttccgtattaattagagccaacagcatagatacacttaggaatctgtcacatgctcgcgagaaaatgag |
81 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38694353 |
tgttccttccgcattaattagagccaacagcaaagatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38694279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 38694203 - 38694151
Alignment:
| Q |
84 |
ccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
135 |
Q |
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||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
38694203 |
ccatcagtcactggaaaggaaaacgataaaatgcaacaatgatcttagaatca |
38694151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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