View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5650_low_4 (Length: 451)

Name: NF5650_low_4
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5650_low_4
NF5650_low_4
[»] chr4 (3 HSPs)
chr4 (53-426)||(42639645-42640018)
chr4 (79-365)||(42565977-42566263)
chr4 (387-443)||(42565924-42565980)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 53 - 426
Target Start/End: Original strand, 42639645 - 42640018
Alignment:
Q  53 tccttaatccttcataggtcataaaaccgtcggatttatggccatgggaaaactatagatatccagtctcaccttcaattcaataattttcagatcaata 152  Q
    |||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  42639645 tcctaaatccttcataggtcataaaaccgactgatttatggccatgggaaaactatagatatccagtgtcaccttcaattcaataattatcagatcaata 42639744  T
Q  153 tatcacatatcttcctaaaatactgaacaagccaaagtccaactaatggcatttctgaagtcctttatcctttatattgcttaatacaaaaatatttttg 252  Q
    |||||||||||||||||| ||   |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||     
T  42639745 tatcacatatcttcctaatatgtggaacaagccaaagtccaactaatggcatctcttaagtcctttatcctttatattgcttaatagaaaaatatttttc 42639844  T
Q  253 ggggtnnnnnnnnnnnnngattttgttttgcagttcgaagaaagcaatagaactgctaagttgtcacacttctcgagcgcccttctatataatagacaca 352  Q
    ||| |             ||||||||||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42639845 gggataaaaaaagaaaaagattttgttttacacttccaagaaagcaacagaactgctaagttgtcacacttctcgagcgcccttctatataatagacata 42639944  T
Q  353 taatgcagcaaatattgctatagttctgaacagaaaatgggaaaaagttaaacataaaggtattaatacaaaca 426  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||    
T  42639945 taatgcagcaaatattgctatagttctaaacagaaaataggaaaaaattaaacataaaggtattaatacaaaca 42640018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 79 - 365
Target Start/End: Complemental strand, 42566263 - 42565977
Alignment:
Q  79 ccgtcggatttatggccatgggaaaactatagatatccagtctcaccttcaattcaataattttcagatcaatatatcacatatcttcctaaaatactga 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42566263 ccgtcggatttatggccatgggaaaactatagatatccagtctcaccttcaattcaataattttcagatcaatatatcacatatcttcctaaaatacgga 42566164  T
Q  179 acaagccaaagtccaactaatggcatttctgaagtcctttatcctttatattgcttaatacaaaaatatttttgggggtnnnnnnnnnnnnngattttgt 278  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |             ||||||||    
T  42566163 acaagctaaagtccaactaatggcatttctgaagtcctttatcctttatattgcttaatacaaaaatatttttggggataaaaaaagaaaaagattttgt 42566064  T
Q  279 tttgcagttcgaagaaagcaatagaactgctaagttgtcacacttctcgagcgcccttctatataatagacacataatgcagcaaat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42566063 tttgcagttcgaagaaagcaatagaactgctaagttgtcacacttctcaagcgcccttctatataatagacacataatgcagcaaat 42565977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 42565980 - 42565924
Alignment:
Q  387 aaatgggaaaaagttaaacataaaggtattaatacaaacataaactttatattcttc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42565980 aaatgggaaaaagttaaacataaaggtattaatacaaacataaactttatattcttc 42565924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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