View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5650_low_8 (Length: 347)
Name: NF5650_low_8
Description: NF5650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5650_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 55929550 - 55929231
Alignment:
| Q |
17 |
tcacagataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggtt |
116 |
Q |
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| T |
55929550 |
tcacagataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggtt |
55929451 |
T |
|
| Q |
117 |
cagtttcttgcgaacaattaatcttaatgccaagctttgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaa |
216 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55929450 |
cagtttcttgcgaacaactaatcttaatgccaagctatgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaa |
55929351 |
T |
|
| Q |
217 |
tgaagaaactttgccgcaaattctttttgaagcattgactaaaacaatgttttaagagctggttatcctataaagtataatca-ttagttgaaaatctat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55929350 |
tgaagaaactttgccgcaaattctttttgaagcattgactaaaacaatgttttaagagctggttatcctataaagtataatcacttagttgaaaatctat |
55929251 |
T |
|
| Q |
316 |
ccttcaaccttagtgtccta |
335 |
Q |
| |
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|||||||||||||||||||| |
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| T |
55929250 |
ccttcaaccttagtgtccta |
55929231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 23 - 273
Target Start/End: Complemental strand, 34585405 - 34585153
Alignment:
| Q |
23 |
ataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagttt |
122 |
Q |
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| T |
34585405 |
ataacatcactgttaagaacaaaaaatggctctccagagtcatctatcagcttgtccctagcaagagccaggggccctgcagttcctaatggttcagttt |
34585306 |
T |
|
| Q |
123 |
cttgcgaacaattaatcttaatgccaagctttgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaaga |
222 |
Q |
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|||| |||||| ||||| | |||||||||||||||||||| | ||||||||||||||||||||||||| | ||||||| || | ||||||||||| |||| |
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| T |
34585305 |
cttgggaacaactaatcgtgatgccaagctttgcttcaaaatccttcaagaaattcaacataacctgacgtaggaagtattgccaaagtcaaaataaaga |
34585206 |
T |
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| Q |
223 |
aactt-tgccgcaa-attctttttgaagcattgactaaaacaatgttttaaga |
273 |
Q |
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||||| ||| ||| || ||||||||||||| ||||||||| |||||||||| |
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| T |
34585205 |
aacttgagccacaattttgtttttgaagcatttactaaaacagtgttttaaga |
34585153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 30921016 - 30920809
Alignment:
| Q |
22 |
gataacatcactgttgagaacaaaaaatggctctccagaatcatctatcagcttatccctagctagagccagagggcctgcagttcctaatggttcagtt |
121 |
Q |
| |
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||||||||| ||||||||||| ||||||||||| ||||| |||| ||||||||||| || || ||||||| || |||||||| || ||||||||||| |
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| T |
30921016 |
gataacatcgctgttgagaacgaaaaatggctcaccagagccatcaatcagcttatctctggcaagagccaagggacctgcagtccccaatggttcagtc |
30920917 |
T |
|
| Q |
122 |
tcttgcgaacaattaatcttaatgccaagctttgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagtgttacaaaagtcaaaatgaag |
221 |
Q |
| |
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||||| || ||| | || || ||| |||||||| | ||||| | |||||||||||||||||| ||||| | ||||||||||| ||| ||||||| ||| |
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| T |
30920916 |
tcttgagagcaagtgattttgatgtcaagcttttcctcaaagtccttcaagaaattcaacatcacctgcaagaggaagtgttaacaaattcaaaataaag |
30920817 |
T |
|
| Q |
222 |
aaactttg |
229 |
Q |
| |
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|||||||| |
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| T |
30920816 |
aaactttg |
30920809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 6173621 - 6173570
Alignment:
| Q |
149 |
agctttgcttcaaacttcttcaagaaattcaacataacctgaagcaggaagt |
200 |
Q |
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|||||||| ||||| | ||||||| ||||||||||||||||||| ||||||| |
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| T |
6173621 |
agctttgcatcaaaatccttcaagtaattcaacataacctgaagtaggaagt |
6173570 |
T |
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