View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652-Insertion-10 (Length: 200)
Name: NF5652-Insertion-10
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 55060807 - 55060999
Alignment:
| Q |
8 |
accaggacaaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataacc |
107 |
Q |
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| T |
55060807 |
accaggataaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataacc |
55060906 |
T |
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| Q |
108 |
agaggtcgaaaaccaaaaggatctctgacgacaacaagtttatctttagtaacaaacacaattgaataagcacctttaactttttcacacgct |
200 |
Q |
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| T |
55060907 |
agaggtcgaaaaccaaaaggatctctgacaacaaaaagtttatcttcagtaacaaacacaattgaataagcacctttaactttttcacacgct |
55060999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 27357010 - 27357166
Alignment:
| Q |
27 |
tcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaag |
126 |
Q |
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| T |
27357010 |
tcataagtagcttcaatcaaatcaagagcacaagtctcagaagcaaaaacaacagcaccattacttctcctccccataaccaaaggcctaaacccaaatg |
27357109 |
T |
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| Q |
127 |
gatctctgacgacaacaagtttatctttagtaacaaacacaattgaataagcacctt |
183 |
Q |
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| T |
27357110 |
gatccctcacagcaacaagcttatcctcagtaacaaacacaatcgaataagcacctt |
27357166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 44334066 - 44334166
Alignment:
| Q |
69 |
gcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggat-ctctgacgacaacaa---gtttatctttagtaacaaac |
164 |
Q |
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| T |
44334066 |
gcaaaaactacagaaccgttactactacttcacataaccaaaggtcgaaaacaaaaaggatcctctgatagcaacaagttgtttatcttcagtaacaaac |
44334165 |
T |
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| Q |
165 |
a |
165 |
Q |
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| T |
44334166 |
a |
44334166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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