View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5652-Insertion-11 (Length: 150)

Name: NF5652-Insertion-11
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5652-Insertion-11
NF5652-Insertion-11
[»] chr1 (5 HSPs)
chr1 (8-150)||(6521636-6521778)
chr1 (8-150)||(6506957-6507099)
chr1 (23-150)||(6512873-6513000)
chr1 (22-150)||(6517271-6517399)
chr1 (23-150)||(47760172-47760299)
[»] scaffold0341 (2 HSPs)
scaffold0341 (8-150)||(982-1124)
scaffold0341 (8-150)||(8635-8778)
[»] chr7 (1 HSPs)
chr7 (8-147)||(722161-722299)
[»] chr5 (3 HSPs)
chr5 (29-149)||(28856512-28856632)
chr5 (31-81)||(28831318-28831368)
chr5 (29-149)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 2e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 6521778 - 6521636
Alignment:
Q  8 cattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521778 cattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattga 6521679  T
Q  108 gtttgacatctcctctacatagtccaatcgcgtttactttgtc 150  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6521678 gtttgacatctcctctacatagtccaatcgcgtttactttgtc 6521636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 6506957 - 6507099
Alignment:
Q  8 cattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattga 107  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||| |     
T  6506957 catttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgg 6507056  T
Q  108 gtttgacatctcctctacatagtccaatcgcgtttactttgtc 150  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  6507057 gtttgacatctcctctacacagtccaatagcgtttactttgtc 6507099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 6512873 - 6513000
Alignment:
Q  23 taccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctc 122  Q
    ||||| ||||| || |||||||| ||||||||| ||||||||||||  |||| |||||| || | ||||||||||||||||||| |||||||||||||||    
T  6512873 taccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctc 6512972  T
Q  123 tacatagtccaatcgcgtttactttgtc 150  Q
    |||| |||||||| ||||||||||||||    
T  6512973 tacaaagtccaatagcgtttactttgtc 6513000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 22 - 150
Target Start/End: Original strand, 6517271 - 6517399
Alignment:
Q  22 gtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcct 121  Q
    |||||| |||||||||| |||||  ||||||||| ||||||||||||  ||||||||||||| ||| |||||| ||||||||||  |||| | |||||||    
T  6517271 gtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcct 6517370  T
Q  122 ctacatagtccaatcgcgtttactttgtc 150  Q
    || ||||||||||| ||||||||||||||    
T  6517371 ctgcatagtccaattgcgtttactttgtc 6517399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 47760172 - 47760299
Alignment:
Q  23 taccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctc 122  Q
    ||||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||  ||||||  ||||| ||| |  | ||| | | | |||| ||||||||||    
T  47760172 taccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctc 47760271  T
Q  123 tacatagtccaatcgcgtttactttgtc 150  Q
    |||| |||||||| ||||||||||||||    
T  47760272 tacagagtccaatggcgtttactttgtc 47760299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 99; Significance: 3e-49; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 982 - 1124
Alignment:
Q  8 cattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattga 107  Q
    |||| |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||| |     
T  982 catttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgg 1081  T
Q  108 gtttgacatctcctctacatagtccaatcgcgtttactttgtc 150  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  1082 gtttgacatctcctctacacagtccaatagcgtttactttgtc 1124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 92; E-Value: 5e-45
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 8635 - 8778
Alignment:
Q  8 cattcttcatcgttgtaccatccaattgcttcttttcgg-ttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattg 106  Q
    |||| |||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||  |||||||||||| |||||||||||||||||||| |    
T  8635 catttttcatcgtcgtaccatccaattgcttcttttcgtattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcg 8734  T
Q  107 agtttgacatctcctctacatagtccaatcgcgtttactttgtc 150  Q
     ||||||||||||||||||| |||||||| ||||||||||||||    
T  8735 ggtttgacatctcctctacacagtccaatagcgtttactttgtc 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 722299 - 722161
Alignment:
Q  8 cattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattga 107  Q
    |||| |||||| | |||| ||||||||||||||||||||||||   |||||||||||||||| ||| |||||| |||| ||||| |||||||||||||||    
T  722299 catttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaatcattga 722201  T
Q  108 gtttgacatctcctctacatagtccaatcgcgtttacttt 147  Q
    | || |||||||||||||||||||||| | ||||||||||    
T  722200 gcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
Q  29 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 128  Q
    |||||||||||||||  |||| |||||| |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  129 gtccaatcgcgtttactttgt 149  Q
     ||| || |||| ||||||||    
T  28856612 atcctatggcgtatactttgt 28856632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
Q  31 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt 81  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |||||||    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt 28831368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 28861789 - 28861909
Alignment:
Q  29 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 128  Q
    ||||||||||||||| ||||  |||| | |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28861789 ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28861888  T
Q  129 gtccaatcgcgtttactttgt 149  Q
     ||| || |||| ||||||||    
T  28861889 atcctatggcgtatactttgt 28861909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University