View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652-Insertion-3 (Length: 950)
Name: NF5652-Insertion-3
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 497; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Original strand, 1154564 - 1155154
Alignment:
| Q |
7 |
aaaacaaacaaaaatcagattgaaaacaattttcatatatgaatcaagaataaagttacggttcaaaattaaattttcatatatgaacctaatcagaatc |
106 |
Q |
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| T |
1154564 |
aaaacaaacaaaaatcagattgaaaacaattttcatatatgaatcaagaataaagttactgttcaaaattaaattttcatatatgaacctaatcagaatc |
1154663 |
T |
|
| Q |
107 |
taatatctatctataaattaacggaaagtataaggatcaaagaaaatcagttattaatttcaagaaactcaaatcacataaaacttcaagaaattcacaa |
206 |
Q |
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| T |
1154664 |
taatatctatctataaattaacggaaagtataaggatcaaagaaaatcagttattaatttcaagaaactcaaatcacataaaacttaaagaaattcacaa |
1154763 |
T |
|
| Q |
207 |
tacatacaattctcatatttaattttccagnnnnnnnnnnnnnnnnnnnnnnactagttgatgaaaaaatatgtaaccgaactgattaaaaacaattttc |
306 |
Q |
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| T |
1154764 |
tacatacaattctcatatttaattttccagattaattaattaattaattaatactagttgatgaaaaaatatgtaaccgaactgattaaaaacaattttc |
1154863 |
T |
|
| Q |
307 |
ataaatgcaatcatatgtatgcaattaa-tcagttatcaattgagtttttaccctaaaatttcagcttatcagttacataatcaggaacaacgcttaaac |
405 |
Q |
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| T |
1154864 |
ataaatgcaatcatatgtatgcaattaaatcagttatcaattgagtttttaccctaaaatttcagcttatcagttacataatcaagaacaacgcttaaac |
1154963 |
T |
|
| Q |
406 |
cgaatcagaatcaagtaaatgagtttttatctcaaaatttcagcttatcaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggag |
505 |
Q |
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| T |
1154964 |
cgaatcagaatcaagtaaatgagtttttatctcaaaatttcagcttatcaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggag |
1155063 |
T |
|
| Q |
506 |
tttttatctaaaaatgtcagcttattaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatcttaaaa |
596 |
Q |
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| T |
1155064 |
tttttatctaaaaaattcagcttattaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatcttaaaa |
1155154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 425 - 759
Target Start/End: Original strand, 1154905 - 1155260
Alignment:
| Q |
425 |
tgagtttttatctcaaaatttcagcttatcaattacataatcaagaacaacgcttaaaccgaa-cagaatcaagtaaaggagtttttatctaaaaatgtc |
523 |
Q |
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| T |
1154905 |
tgagtttttaccctaaaatttcagcttatcagttacataatcaagaacaacgcttaaaccgaatcagaatcaagtaaatgagtttttatctcaaaatttc |
1155004 |
T |
|
| Q |
524 |
agcttattaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatcttaaaatttcagcttatcaattacataat---- |
619 |
Q |
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| T |
1155005 |
agcttatcaattacataatcaagaacaacgcttaaaccgaacagaatcaagtaaaggagtttttatctaaaaaattcagcttattaattacataatcaag |
1155104 |
T |
|
| Q |
620 |
-----cgcttaaacctaatcagaatcaaagaaag------------taaaaggattagagaaaattataccagttcccaaagcacagagctcaacatcat |
702 |
Q |
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| T |
1155105 |
aacaacgcttaaaccgaa-cagaatcaagtaaaggagtttttatcttaaaaggattaaagaaaattataccagttcccaaagcacagagctcaacatcat |
1155203 |
T |
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| Q |
703 |
tatccagcttcaagtgtttctgaatcagaaagaaacacgaaattcataatcagaaat |
759 |
Q |
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| T |
1155204 |
tatccagcttcaagtgtttctgaatcagaaagaaacacgaaatccataatcagaaat |
1155260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 805 - 950
Target Start/End: Original strand, 1155306 - 1155452
Alignment:
| Q |
805 |
cctaattaccttagcgatgttaagggtagaagaagagag-cttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcc |
903 |
Q |
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||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155306 |
cctaattaccttagcgatgttaagg-tagaagaagagtggcttcttagtcttggaaacttgaatacgatagatcttcttctctttctcgatctcgccgcc |
1155404 |
T |
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| Q |
904 |
attgatcttcacattcttcgtcgcaccggttag-actgcaatcgcttc |
950 |
Q |
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| T |
1155405 |
attgatcttcacattcttcgtcgcaccggttagaactgcaatcgcttc |
1155452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 674 - 740
Target Start/End: Complemental strand, 38665051 - 38664985
Alignment:
| Q |
674 |
agttcccaaagcacagagctcaacatcattatccagcttcaagtgtttctgaatcagaaagaaacac |
740 |
Q |
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| T |
38665051 |
agttcccaaagcatagagctcaacatcattatccagcttcaagtgtttctgaatcagaaagaaacac |
38664985 |
T |
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