View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5652-Insertion-4 (Length: 895)

Name: NF5652-Insertion-4
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5652-Insertion-4
NF5652-Insertion-4
[»] chr2 (17 HSPs)
chr2 (8-889)||(30947031-30947912)
chr2 (8-171)||(30952961-30953123)
chr2 (298-384)||(17363504-17363590)
chr2 (283-398)||(25867143-25867259)
chr2 (615-748)||(17395837-17395970)
chr2 (297-456)||(28645682-28645838)
chr2 (297-370)||(31067585-31067658)
chr2 (642-866)||(20377825-20378048)
chr2 (317-396)||(20378300-20378378)
chr2 (312-370)||(21713451-21713509)
chr2 (312-370)||(45550042-45550099)
chr2 (312-369)||(18765677-18765733)
chr2 (419-464)||(20378236-20378281)
chr2 (615-683)||(28645458-28645526)
chr2 (629-683)||(8945023-8945078)
chr2 (327-369)||(24317911-24317953)
chr2 (331-369)||(26860398-26860436)
[»] chr7 (28 HSPs)
chr7 (312-890)||(10259703-10260287)
chr7 (170-768)||(15003025-15003635)
chr7 (535-694)||(30925678-30925837)
chr7 (555-862)||(9739224-9739531)
chr7 (555-877)||(9732334-9732656)
chr7 (318-463)||(9732742-9732887)
chr7 (570-876)||(2392373-2392677)
chr7 (308-456)||(9739631-9739779)
chr7 (312-369)||(23174981-23175038)
chr7 (318-399)||(21546872-21546953)
chr7 (312-370)||(5299148-5299206)
chr7 (312-369)||(30226086-30226143)
chr7 (805-866)||(30925508-30925569)
chr7 (312-462)||(2392785-2392935)
chr7 (312-369)||(3290785-3290841)
chr7 (308-369)||(13455213-13455273)
chr7 (318-369)||(48797719-48797769)
chr7 (319-369)||(15436057-15436106)
chr7 (629-683)||(21383315-21383369)
chr7 (629-678)||(21546587-21546637)
chr7 (312-369)||(2076507-2076563)
chr7 (312-369)||(2082926-2082982)
chr7 (312-369)||(14984673-14984729)
chr7 (312-369)||(15414284-15414340)
chr7 (312-369)||(15708173-15708229)
chr7 (340-369)||(23057235-23057264)
chr7 (312-369)||(24813926-24813983)
chr7 (312-369)||(26195558-26195614)
[»] chr3 (17 HSPs)
chr3 (317-856)||(8147146-8147693)
chr3 (299-681)||(20975771-20976160)
chr3 (298-748)||(20961778-20962233)
chr3 (317-625)||(15962279-15962588)
chr3 (558-866)||(23432689-23432998)
chr3 (312-399)||(10082344-10082431)
chr3 (312-399)||(10189269-10189356)
chr3 (351-455)||(42245063-42245164)
chr3 (823-866)||(20961664-20961707)
chr3 (635-684)||(10082100-10082149)
chr3 (635-684)||(10189025-10189074)
chr3 (326-369)||(8224854-8224897)
chr3 (805-866)||(20975589-20975650)
chr3 (326-369)||(18476945-18476987)
chr3 (339-369)||(15635974-15636004)
chr3 (615-699)||(5535545-5535630)
chr3 (312-369)||(9031482-9031538)
[»] chr6 (22 HSPs)
chr6 (312-891)||(32668655-32669235)
chr6 (295-866)||(28044534-28045105)
chr6 (317-866)||(13729987-13730540)
chr6 (312-745)||(26895601-26896036)
chr6 (488-691)||(28043834-28044039)
chr6 (317-462)||(3357004-3357149)
chr6 (615-888)||(13553653-13553925)
chr6 (553-780)||(10230510-10230738)
chr6 (802-890)||(12464603-12464691)
chr6 (312-455)||(12464168-12464308)
chr6 (312-451)||(13553352-13553488)
chr6 (807-866)||(28043677-28043736)
chr6 (326-363)||(28623543-28623580)
chr6 (326-369)||(34657253-34657296)
chr6 (629-711)||(2401582-2401664)
chr6 (642-711)||(22917700-22917770)
chr6 (312-369)||(15038349-15038405)
chr6 (278-370)||(16176560-16176653)
chr6 (312-363)||(20003138-20003188)
chr6 (642-711)||(22884901-22884971)
chr6 (317-363)||(22885243-22885289)
chr6 (312-369)||(16137683-16137739)
[»] chr1 (18 HSPs)
chr1 (305-681)||(50057515-50057897)
chr1 (305-712)||(951385-951794)
chr1 (299-462)||(19748599-19748761)
chr1 (629-866)||(18838116-18838337)
chr1 (636-866)||(24549568-24549797)
chr1 (308-435)||(23600449-23600576)
chr1 (636-866)||(51110640-51110870)
chr1 (547-708)||(14911619-14911780)
chr1 (312-384)||(49086677-49086749)
chr1 (347-455)||(13799962-13800067)
chr1 (801-866)||(50058017-50058082)
chr1 (339-463)||(51110383-51110502)
chr1 (340-399)||(24549304-24549362)
chr1 (317-369)||(45599430-45599481)
chr1 (535-581)||(49086478-49086524)
chr1 (825-866)||(951241-951282)
chr1 (297-370)||(4650312-4650384)
chr1 (312-369)||(33062387-33062443)
[»] scaffold0072 (2 HSPs)
scaffold0072 (295-681)||(18534-18926)
scaffold0072 (801-866)||(19045-19110)
[»] scaffold0062 (2 HSPs)
scaffold0062 (295-712)||(1837-2253)
scaffold0062 (825-866)||(1694-1735)
[»] chr5 (13 HSPs)
chr5 (361-861)||(17099236-17099748)
chr5 (599-862)||(15117081-15117342)
chr5 (299-463)||(15116780-15116939)
chr5 (419-611)||(19663715-19663913)
chr5 (312-369)||(17920885-17920941)
chr5 (299-384)||(19663576-19663661)
chr5 (326-363)||(22184705-22184742)
chr5 (312-369)||(11204723-11204779)
chr5 (317-370)||(24394638-24394691)
chr5 (312-369)||(26183336-26183392)
chr5 (335-369)||(22404863-22404897)
chr5 (312-369)||(7898016-7898072)
chr5 (635-711)||(22652074-22652151)
[»] chr4 (22 HSPs)
chr4 (295-866)||(13268830-13269406)
chr4 (629-866)||(17871113-17871349)
chr4 (308-461)||(13875971-13876119)
chr4 (299-455)||(17871522-17871674)
chr4 (788-866)||(13959451-13959530)
chr4 (628-780)||(11289043-11289195)
chr4 (312-461)||(11289347-11289495)
chr4 (352-451)||(15841673-15841772)
chr4 (296-399)||(19564820-19564923)
chr4 (807-892)||(11864703-11864787)
chr4 (297-370)||(11865214-11865287)
chr4 (322-399)||(13958997-13959072)
chr4 (308-369)||(24143132-24143192)
chr4 (312-369)||(25354737-25354793)
chr4 (547-598)||(9235089-9235141)
chr4 (637-748)||(15841945-15842056)
chr4 (326-363)||(10721998-10722035)
chr4 (326-363)||(10935767-10935804)
chr4 (308-369)||(19894905-19894965)
chr4 (312-369)||(21478109-21478165)
chr4 (312-369)||(23541245-23541301)
chr4 (297-370)||(24608692-24608765)
[»] chr8 (14 HSPs)
chr8 (312-461)||(24482319-24482468)
chr8 (312-462)||(32179308-32179458)
chr8 (347-455)||(14162659-14162764)
chr8 (805-875)||(28848040-28848110)
chr8 (314-369)||(23864568-23864623)
chr8 (326-369)||(37155627-37155669)
chr8 (319-369)||(8726853-8726902)
chr8 (339-369)||(12814693-12814723)
chr8 (335-369)||(24091981-24092015)
chr8 (319-369)||(39080974-39081023)
chr8 (319-384)||(16196138-16196203)
chr8 (550-655)||(16208357-16208460)
chr8 (312-369)||(17279890-17279946)
chr8 (312-369)||(33466261-33466317)
[»] scaffold0495 (1 HSPs)
scaffold0495 (553-780)||(7231-7459)
[»] scaffold0259 (2 HSPs)
scaffold0259 (559-856)||(20341-20639)
scaffold0259 (305-399)||(20803-20896)
[»] scaffold0205 (2 HSPs)
scaffold0205 (305-384)||(9966-10045)
scaffold0205 (535-603)||(10222-10290)
[»] scaffold0032 (1 HSPs)
scaffold0032 (318-369)||(103113-103163)
[»] scaffold0226 (1 HSPs)
scaffold0226 (335-369)||(7641-7675)
[»] scaffold0135 (1 HSPs)
scaffold0135 (547-598)||(40954-41006)
[»] scaffold0143 (1 HSPs)
scaffold0143 (312-369)||(36299-36355)


Alignment Details
Target: chr2 (Bit Score: 858; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 858; E-Value: 0
Query Start/End: Original strand, 8 - 889
Target Start/End: Original strand, 30947031 - 30947912
Alignment:
Q  8 ctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccaccccaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947031 ctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccaccccaaaa 30947130  T
Q  108 tgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaaacacaatgttatgaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947131 tgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcacgtaggtataacagatgttaaacacaatgttatgaca 30947230  T
Q  208 aatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaagacaaggttatttattg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30947231 aatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatattttaatgagataacaagaagtaaaagacaaggttatttgttg 30947330  T
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30947331 acctagtttggtgcaacttcacctacatctaggggctaccaagtcaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagttttcac 30947430  T
Q  408 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctctagtgtgagagatccccctccaagttcctcttaatcacaaacca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947431 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaagactctctagtgtgagagatccccctccaagttcctcttaatcacaaacca 30947530  T
Q  508 gtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947531 gtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcg 30947630  T
Q  608 attacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggctt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30947631 attacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggctt 30947730  T
Q  708 cagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatt 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30947731 cagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgagcttgatgcacaaatcgggctagaacaatcagctgaattacgagatt 30947830  T
Q  808 tcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaacc 889  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30947831 tcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcataaacacgttaaacataaacc 30947912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 30952961 - 30953123
Alignment:
Q  8 ctattgcaatttcttaccatagtataaacatccttaaagagagttggaaaaagaataacctgtttgaagaacttttgatgttgttctttccaccccaaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |  || |||||| ||||||||||||||||||||||||||| |||| |||||||    
T  30952961 ctattgcaatttcttaccatagtataaacatccttaaagaaagttg-accaacaataacttgtttgaagaacttttgatgttgttctgtccatcccaaaa 30953059  T
Q  108 tgtcttccataaggtgaagcatgaaaatgttgacatatttgaggaatctcttcatcagaggcac 171  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  30953060 tgtcttccataaggcgaagcatgaaaatgttgacatatttgaggaatcttttcatcataggcac 30953123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 17363504 - 17363590
Alignment:
Q  298 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 384  Q
    |||||| |||||| |||| |||||||| |||||||||||| |||| ||||||| |||||| ||||||||||||| || |||||||||    
T  17363504 ttatttgttgacccagttcggtgcaacctcacctacatctgggggttaccaagtcaggaatgaaattcactatgatagtatcaattc 17363590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 25867143 - 25867259
Alignment:
Q  283 aagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaa 381  Q
    |||||||||||| | ||||||| || || |||||||||||||| |||||||||||| | |||||||| |||||||||||||| || |||| || ||| ||    
T  25867143 aagtaaaagacacaagttatttcttaacttagtttggtgcaacgtcacctacatctggaggctaccaggccaggaaggaaatccagtatgatagtattaa 25867242  T
Q  382 ttcgaagcatacataaa 398  Q
    || ||||| | ||||||    
T  25867243 tttgaagcctgcataaa 25867259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 615 - 748
Target Start/End: Original strand, 17395837 - 17395970
Alignment:
Q  615 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgct 714  Q
    |||||||||||   || || |||||| |||||||||||||||| ||||| |||||||||||||||||||| ||  |||| |||||   |||||||||       
T  17395837 agtccaactctagcattaaggtgatacaagagtggctcacaaacaacaacgacatactaaaaccctaaaaaacaattttgtaaatgacggcttcagtaaa 17395936  T
Q  715 caattaggtattttgtcatcctttatatagcctg 748  Q
     |||||||||||  ||  ||||||||||||||||    
T  17395937 gaattaggtattgagtattcctttatatagcctg 17395970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 456
Target Start/End: Complemental strand, 28645838 - 28645682
Alignment:
Q  297 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 396  Q
    |||||||||| ||| ||||  ||||||| |||||||||||  |||| ||||||| ||||||||||| |||||||  || ||| | || ||||||| ||||    
T  28645838 gttatttattaaccaagttctgtgcaacgtcacctacatccgggggataccaagtcaggaaggaaaatcactataatagtattagtttgaagcatgcata 28645739  T
Q  397 aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 456  Q
    ||| | ||   | | ||||||||||| ||  |||||||| ||||||||||||||| ||||    
T  28645738 aaaacatt---cggtctactaacttcgcagctaatcactacccgtgtaatttctatctaa 28645682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 31067658 - 31067585
Alignment:
Q  297 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||| || ||||||||||||||||| |||||||| ||| |||||||||||  |||||||||||| ||||||    
T  31067658 gttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaatccactat 31067585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 642 - 866
Target Start/End: Complemental strand, 20378048 - 20377825
Alignment:
Q  642 aagagtggctcacaaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttat 740  Q
    ||||||| ||||||||||||||||| || |||||||| ||||| | |||||||  ||||   ||||||||||   |||||||| ||  ||| | ||||||    
T  20378048 aagagtgactcacaaataacaaagaacaaactaaaacactaaatgtctcttttgcaaatgacggcttcagtgaataattaggtcttgagtctttctttat 20377949  T
Q  741 atagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaag-tattctgaagcatatcagatgt 839  Q
    |||||||| | |   ||||  ||||||||||||||| |||||  |  ||||||||||  || |||||| |||| | | | |||||||||| ||  |||||    
T  20377948 atagcctgat-gcgaaatgaacttgatgcacaaatctggcta--atcatcagctgaaacacaagattttagcataggattttctgaagcaaatatgatgt 20377852  T
Q  840 ttccttaaatgttgcaacaacattctt 866  Q
    |||||||||||||||||||| ||||||    
T  20377851 ttccttaaatgttgcaacaatattctt 20377825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 317 - 396
Target Start/End: Complemental strand, 20378378 - 20378300
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacata 396  Q
    ||||||||||||||||||||| || ||||||||||||||||| |||| |||||  ||| ||||||||| |||| ||||||    
T  20378378 ggtgcaacttcacctacatctgggagctaccaagccaggaagaaaatgcacta-agtagtatcaattcaaagcgtacata 20378300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 21713509 - 21713451
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||||||||| |||||||||| |||||||  |||| ||||||||||||| ||||||    
T  21713509 agtttggtgcaacatcacctacatgtaggggcatccaaaccaggaaggaaatccactat 21713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 45550042 - 45550099
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||    
T  45550042 agttcggtgcaacatcacctacatctaggggct-ccaagccaggaacgaaatccactat 45550099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 18765677 - 18765733
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  18765677 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 18765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 20378281 - 20378236
Alignment:
Q  419 cttctcacttaatcactgcccgtgtaatttctacctaaaactctct 464  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  20378281 cttctcacttaatcactacccgtgcaatttctacctaagactctct 20378236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 615 - 683
Target Start/End: Complemental strand, 28645526 - 28645458
Alignment:
Q  615 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaa 683  Q
    |||||| ||||  |||||| |||||| |||||| ||||||||||||||| ||||| | |||||||||||    
T  28645526 agtccagctctagtatcaaggtgatacaagagttgctcacaaataacaaggacattccaaaaccctaaa 28645458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 8945023 - 8945078
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaa-agacatactaaaaccctaaa 683  Q
    ||||| |||||| ||||||||||||||||||||||  |||||||||||| ||||||    
T  8945023 atcaaggtgatacaagagtggctcacaaataacaacggacatactaaaatcctaaa 8945078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 24317953 - 24317911
Alignment:
Q  327 cacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||| |||| |||||||||||||||||||| |||||    
T  24317953 cacctacatctgggggttaccaagccaggaaggaaatccacta 24317911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 331 - 369
Target Start/End: Complemental strand, 26860436 - 26860398
Alignment:
Q  331 tacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  26860436 tacatctgggggctaccaagccaggaaggaaatccacta 26860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 312 - 890
Target Start/End: Complemental strand, 10260287 - 10259703
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||||    
T  10260287 agttcggtgcaacttcaccttcatctgggggctaccaaaccaggaaggaaattcactctagtagtatcaatttgaagcatacataaaagctttcaccagc 10260188  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-------tag-tgtgagagatccccctccaagttcctcttaatcacaa 503  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||       ||| | ||||||||||| |||| | ||||||||||||||||    
T  10260187 ctactaacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagatatgagagatccctctcccacttcctcttaatcacaa 10260088  T
Q  504 accagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaa 603  Q
    |||||||| || ||||||| ||||| ||| |||||||||| | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10260087 accagtgatcgcccttgaaatactaacaa-tatggagacactctccttgacaaagaatcacctcgtgcttacaagcttagagagattcagagttttacaa 10259989  T
Q  604 ctcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtg 703  Q
    ||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |    
T  10259988 ctcaattacaaattccaactataatatcaaagtgatataagagtggctcacaaataacaaaggcagactaaaaccctaaaagactcttttgtaaattgcg 10259889  T
Q  704 gcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacga 803  Q
    |||||||| ||||||| ||| || |||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||||||||| ||||| | ||    
T  10259888 gcttcagtactcaatttggtcttctgtcttcctttatatagcatgcttgctgaatgggcttgatgcacaaatcaggcta-aacaatcagttgaatcatga 10259790  T
Q  804 gatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaaccg 890  Q
    ||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  10259789 gatttcaacacaggttttctgaagcatattagatgtttccttaaatgttgcaacaacattcttcagaaacacgctaagtataaaccg 10259703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 170 - 768
Target Start/End: Complemental strand, 15003635 - 15003025
Alignment:
Q  170 acgtaggtataacagatgttaaacacaatgttatgacaaatcagatgtcacatgcgatgttagaacatcaggacattagtaataacaaatgaatatttta 269  Q
    ||||||||||| |||||||| ||||| |||||||||||||||| ||||| | |  ||||| ||||||||||||||  |  || ||||||| | |||||||    
T  15003635 acgtaggtatagcagatgttgaacacgatgttatgacaaatcaaatgtcgcgtaagatgtcagaacatcaggacaacaacaacaacaaataactatttta 15003536  T
Q  270 atgagataacaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcact 368  Q
    || | |  ||| ||||||||||||  | || |||||||| || |||| |||||||||| || ||||||| ||| |||| |||||||||| |||||| |||    
T  15003535 attaaaggacatgaagtaaaagactcaagtaatttattgtcccagttcggtgcaactttacgtacatctggggactactaagccaggaatgaaatttact 15003436  T
Q  369 atggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc----- 463  Q
    || ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||| || |||||||||| ||||||         
T  15003435 atagtagtatcaattcgaagcatacataaaagctatcaccagtctactaatttctcacttaatcactacccgtgcaacttctacctaagactctcactag 15003336  T
Q  464 ---tag-tgtgagagatccccctccaagttcctcttaatcacaaa-ccagtgaccgtccttgaagtactatcaaa-tatggagacattatcctagacaaa 557  Q
       ||| | ||||||||   ||||| | ||||||||| ||||| | ||||||||||| ||| |||||||| |||| |||||||||| | ||||||| ||     
T  15003335 tcctagatatgagagattttcctcccacttcctcttagtcacagatccagtgaccgttcttcaagtactaacaaaatatggagacactctcctagaaaat 15003236  T
Q  558 gaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaa 657  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||| ||| || ||||||||    
T  15003235 gaatcaactcgtgcttaaaagctttgagagattcagagttttactactcaataacaaagtccaactctaatatcaaagtgatatgagaatgactcacaaa 15003136  T
Q  658 taacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaa 757  Q
    |||||| |||| |||||||||||||||||||  ||| | ||||| |||||||||||| ||||||||  | | || |  ||||||||| ||||||  ||||    
T  15003135 taacaatgacagactaaaaccctaaaagacttctttttcaattgcggcttcagtgcttaattaggtcctctatctttgtttatatagtctgcttcctgaa 15003036  T
Q  758 tgggcttgatg 768  Q
    || ||||||||    
T  15003035 tgagcttgatg 15003025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 535 - 694
Target Start/End: Complemental strand, 30925837 - 30925678
Alignment:
Q  535 atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaa 634  Q
    ||||||||| | ||| ||| || ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||| |||||  ||||||||    
T  30925837 atggagacagtctccgagaaaaggaatcaactcgtgcttaaaagcttagagagattcaaagctttacaactcaattacaaagtcgaactcaaatatcaaa 30925738  T
Q  635 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttc 694  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| | |||| |||||    
T  30925737 gtgatataagagtggctcacaaataacaacgacagactaaaaccctatatgacttttttc 30925678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 555 - 862
Target Start/End: Complemental strand, 9739531 - 9739224
Alignment:
Q  555 aaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctca 653  Q
    |||||||| ||||||||||||||||||| ||| || ||| ||||| ||||||| | || | |||||| |||| ||||||||| ||||  || ||||||||    
T  9739531 aaagaatccactcgtgcttacaagcttatgagcgaatcaaagttt-acaactcaaataaatagtccagctctaatatcaaagagatacgagtgtggctca 9739433  T
Q  654 caaataacaaagacatactaaaa-ccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttg 752  Q
    |||||||||| |||| ||||||| ||||||  ||||||||| | ||||| || || ||||   || ||| | ||  ||| ||||||||||||| || |||    
T  9739432 caaataacaaggacagactaaaaaccctaattgactcttttatgaattgcggttttagtgacaaaatagttcttgagtcttcctttatatagcatgattg 9739333  T
Q  753 ttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgtt 852  Q
       |||||||| |||||| ||||| ||||||| ||  ||||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  9739332 cataatgggctcgatgcataaatcaggctaga-catccagcttaatcacgatatttcagcacaaatattctgaagcagatcagatgtttccttaaatgtt 9739234  T
Q  853 gcaacaacat 862  Q
    ||||||||||    
T  9739233 gcaacaacat 9739224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 555 - 877
Target Start/End: Complemental strand, 9732656 - 9732334
Alignment:
Q  555 aaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctca 653  Q
    |||||||| ||||||||||||||||||| ||| || ||| ||||| ||||||  | || | ||||||||||| ||||||| | ||||  |||||||||||    
T  9732656 aaagaatccactcgtgcttacaagcttacgagcgaatcaaagttt-acaactaaactaaatagtccaactctaatatcaatgagatacgagagtggctca 9732558  T
Q  654 caaataacaaagacatact-aaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttg 752  Q
    |||||||||| |||| ||| ||||||||||  ||||||||||| ||||| ||||||||||   || || || ||  ||| |||||||||||||||| |||    
T  9732557 caaataacaaggacaaactaaaaaccctaattgactcttttctgaattgcggcttcagtgacaaaataagtcttgagtcttcctttatatagcctgattg 9732458  T
Q  753 ttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgtt 852  Q
      |||| ||||||||||| |||||||| |||  ||  ||||| ||| |||| |||||| ||||  |||||| ||| | |||||| |||||||||||| ||    
T  9732457 cagaataggcttgatgcataaatcgggatag-tcatccagcttaatcacgatatttcaacacacatattcttaagaagatcagaagtttccttaaatatt 9732359  T
Q  853 gcaacaacattcttcagaaacacgt 877  Q
     ||||||||  ||| ||||||||||    
T  9732358 tcaacaacaaacttaagaaacacgt 9732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 9732887 - 9732742
Alignment:
Q  318 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctacta 417  Q
    ||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||| | ||||| |||| ||||||| ||||||| || || ||||  |||||    
T  9732887 gtgcaacgtcacctagatctgggggctaccaagccatgaacgaaattcactatagcaatattaatttgaagcatgcataaaaactatctccagtgtacta 9732788  T
Q  418 acttctcacttaatcactgcccgtgtaatttctacctaaaactctc 463  Q
     ||||||||||||||||| | |||| |||||||| |||| ||||||    
T  9732787 gcttctcacttaatcactactcgtgcaatttctatctaagactctc 9732742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 570 - 876
Target Start/End: Complemental strand, 2392677 - 2392373
Alignment:
Q  570 gcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagaca 668  Q
    ||||||||||||| ||| ||||||| |||| ||||||| | || | |||||||||||  |||||| |||||| ||||| |||| | ||||||||| ||||    
T  2392677 gcttacaagcttatgagtgattcagggttt-acaactcaacta-acagtccaactctagtatcaacgtgatagaagagaggctaaaaaataacaaggaca 2392580  T
Q  669 tactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatg 768  Q
      ||||||||||||| ||| ||||| |||||  |  |||||||  | |||||||| ||  ||| |||||||||||||||   ||  ||||| ||||||||    
T  2392579 agctaaaaccctaaatgacacttttgtaaatgataacttcagtagtgaattaggtcttgagtcttcctttatatagcctaaatgcagaatgagcttgatg 2392480  T
Q  769 cacaaatcgggctagaacaatcagctgaattacgagat-ttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttc 867  Q
    ||||||||||| |  ||||  ||||||||| ||  | | |||||||||| |||||||||| | |||| |||||| |||||||||| ||||| ||  |||     
T  2392479 cacaaatcggg-tcaaacatccagctgaatcacacggtcttcagcacaa-tattctgaagtagatcaaatgttttcttaaatgttacaacatcacactta 2392382  T
Q  868 agaaacacg 876  Q
    |||||||||    
T  2392381 agaaacacg 2392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 308 - 456
Target Start/End: Complemental strand, 9739779 - 9739631
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 407  Q
    |||||||| |||||||| ||| ||||||||| |||||||||| ||| |||| ||||||| ||| | | ||| |||| ||||||| ||||||| || ||      
T  9739779 acctagttcggtgcaacgtcatctacatctaagggctaccaaaccaagaagaaaattcattatagcagtattaatttgaagcatgcataaaaactatcta 9739680  T
Q  408 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaa 456  Q
    ||  |||||| ||||||||||||||| | |||||| |||||||| ||||    
T  9739679 caatctactagcttctcacttaatcattacccgtgcaatttctatctaa 9739631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 23175038 - 23174981
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  23175038 agttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaatccacta 23174981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 21546953 - 21546872
Alignment:
Q  318 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    |||||||||||||||||||| | ||||||||||  ||| |||||||||||||  ||| ||||||||| ||||| ||||||||    
T  21546953 gtgcaacttcacctacatctggaggctaccaagttagggaggaaattcactaaagtagtatcaattcaaagcaaacataaaa 21546872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 5299148 - 5299206
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    |||||||| |||| || |||| |||||||||||||||||||||||||||||| ||||||    
T  5299148 agtttggtacaacatcgcctagatctaggggctaccaagccaggaaggaaatccactat 5299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 30226086 - 30226143
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||||||| |||||||||||| |||||||||||| |||||    
T  30226086 agttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaatccacta 30226143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 805 - 866
Target Start/End: Complemental strand, 30925569 - 30925508
Alignment:
Q  805 atttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    |||||||||||| |||||| ||||| ||| | ||||| ||||||||||||||||||||||||    
T  30925569 atttcagcacaaatattctaaagcagatcggctgttttcttaaatgttgcaacaacattctt 30925508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 2392935 - 2392785
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| |||||||| |||||||| | |  |||||||||||| | ||| ||||||||||||  || ||| | || ||| |||||| |||| || || | ||     
T  2392935 agttcggtgcaacgtcacctacgtttgagggctaccaagctaagaatgaaattcactataatagtattagtttgaaacatacacaaaaactatctcaagt 2392836  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 462  Q
    |||||| |||| ||| |||||||| || |||||||||||| |||| |||||    
T  2392835 ctactagcttcacacctaatcactacctgtgtaatttctatctaacactct 2392785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 3290841 - 3290785
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||||| ||||| || ||| ||||||||||||||||||||||||| |||||    
T  3290841 agtttggtgcaacgtcaccaac-tctgggggctaccaagccaggaaggaaatccacta 3290785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 13455273 - 13455213
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||| ||||||||||| |||||    
T  13455273 acctagttcggtgcaacgtcacctac-tctgggggctaccaagcaaggaaggaaatccacta 13455213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 48797769 - 48797719
Alignment:
Q  318 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  48797769 gtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 48797719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 15436057 - 15436106
Alignment:
Q  319 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||| |||||||| |||||||||||||||||||| |||||||| |||||    
T  15436057 tgcaacgtcacctac-tctaggggctaccaagccagaaaggaaatccacta 15436106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 21383369 - 21383315
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaa 683  Q
    ||||| |||||| |||||||||| ||||| ||||| ||||||| |||||||||||    
T  21383369 atcaaggtgatacaagagtggcttacaaacaacaaggacataccaaaaccctaaa 21383315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 629 - 678
Target Start/End: Complemental strand, 21546637 - 21546587
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaaag-acatactaaaacc 678  Q
    ||||| |||||| |||||||||||||||||||||||| ||| |||||||||    
T  21546637 atcaacgtgatacaagagtggctcacaaataacaaagaacaaactaaaacc 21546587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 2076507 - 2076563
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2076507 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2076563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 2082926 - 2082982
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||| ||||||||| |||||    
T  2082926 agttcggtgcaacgtcacctac-tctgggggctaccaagccatgaaggaaatccacta 2082982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 14984673 - 14984729
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  14984673 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 14984729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 15414284 - 15414340
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||    
T  15414284 agttcggtgcaacgtcacctac-tctgggggctatcaagccaggaaggaaatccacta 15414340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 15708173 - 15708229
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||||| ||||| ||||| ||| ||||||||| ||||||||||| |||||    
T  15708173 agtttggtgcaact-cacctgcatctggggtctaccaagctaggaaggaaatccacta 15708229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 23057235 - 23057264
Alignment:
Q  340 gggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||||||||||||||||||||||    
T  23057235 gggctaccaagccaggaaggaaattcacta 23057264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 24813926 - 24813983
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| | ||||||||   ||||||||||||||||||||||||| |||||    
T  24813926 agttcggtgcaacatgacctacataggggggctaccaagccaggaaggaaatccacta 24813983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 26195614 - 26195558
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| ||||||||| ||||||||||| | ||||||||||||| |||| ||||||||||    
T  26195614 agttcggtgcaact-cacctacatctggaggctaccaagccaagaagaaaattcacta 26195558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 319; Significance: 1e-179; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 317 - 856
Target Start/End: Complemental strand, 8147693 - 8147146
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaag-ctttcaccagcctac 415  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||  || ||||||||||||    
T  8147693 ggtgcaacttcacctttatctaggggctaccaagccaggaaggaaattcactataataatatcaattcgaagcatacaaaaaaaactatcaccagcctac 8147594  T
Q  416 taacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-------tag-tgtgagagatccccctccaagttcctcttaatcacaaacca 507  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||       ||| | |||||||||||||||| | ||||||||||||||||  ||    
T  8147593 taacttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcctagatatgagagatccccctcccacttcctcttaatcacaactca 8147494  T
Q  508 gtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcg 607  Q
    |||| |||||||||| ||||| |||||||||||||| | ||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8147493 gtgatcgtccttgaaatactaacaaatatggagacactctcctgaacaaagaatcaactcgttcttacaagcttagagagattcagagttttacaactcg 8147394  T
Q  608 attacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggctt 707  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||| ||||||  |||||    
T  8147393 attacaaagtccaactctaatatcaaagtgatataagagtagctcacaaataataaagacaaactaaaaccttaaaagactcttttgtaaattacggctt 8147294  T
Q  708 cagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatt 807  Q
    |||| |||||||||||  | |||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| | ||||||    
T  8147293 cagtactcaattaggtcatctgtcttcctttatatagcttgcttgctgaatgggcttaatgcacaaatcgggcta-aacaatcagcttaatcatgagatt 8147195  T
Q  808 tcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaa 856  Q
    |||||||| |||||||||||||| | ||||||||||||||||| |||||    
T  8147194 tcagcacatgtattctgaagcatgttagatgtttccttaaatgatgcaa 8147146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 299 - 681
Target Start/End: Complemental strand, 20976160 - 20975771
Alignment:
Q  299 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 398  Q
    ||||| ||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||   || ||||||||  |||||||||||||    
T  20976160 tatttgttgacatagttcggtgcaacttcacctacatctgggggctaccaaaccaggaaggaaatccactacaatagtatcaatttaaagcatacataaa 20976061  T
Q  399 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc--tagtgtga-----gagatccccctccaagttcc 491  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||  ||||   |     |||| ||| |||  | ||||    
T  20976060 agctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacctaagactctcactagtccaaaatatgagaacccactc--acttcc 20975963  T
Q  492 tcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagatt 590  Q
    ||||| ||||| |||| |||||||||||||| | || ||||||||| |||||| | ||||||| |||||||||||| ||||||| ||||||||| |||||    
T  20975962 tcttagtcacagaccaatgaccgtccttgaaatccttatcaaatatagagacactctcctagaaaaagaatcaacttgtgcttaaaagcttagatagatt 20975863  T
Q  591 cagagttttacaactcgattacaaa-gtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 681  Q
     ||||| ||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  20975862 tagagtattacaactcaattacaaaagtccaactctaatatcaaagagatataagagtggctcacaaataacaacgacaaactaaaacccta 20975771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 298 - 748
Target Start/End: Complemental strand, 20962233 - 20961778
Alignment:
Q  298 ttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataa 397  Q
    |||||| |||||| | | |||||||||||||||||||||| |||| ||||||| |||||||||||  |||||| ||| ||||||||||||||||||||||    
T  20962233 ttatttgttgacccactctggtgcaacttcacctacatctgggggttaccaagtcaggaaggaaagccactatagtagtatcaattcgaagcatacataa 20962134  T
Q  398 aagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctct--agtgtga-----gagatccccctccaagttc 490  Q
    ||| |||||||||||| ||||||||||||||||||||| ||||||  |||||||||||| ||||||   |||   |     |||| ||| |||  | |||    
T  20962133 aagttttcaccagcctgctaacttctcacttaatcactacccgtggtatttctacctaagactctcacaagtcctaaatatgagaacccactc--acttc 20962036  T
Q  491 ctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagat 589  Q
    |||||| ||||| ||||||| ||||||||||| | || || ||||||||||||||| | ||||| ||| ||||||||| |||||| ||||||| ||||||    
T  20962035 ctcttagtcacagaccagtggccgtccttgaaatccttattaaatatggagacattctgctagaaaaataatcaactcatgcttaaaagcttaaagagat 20961936  T
Q  590 tcagagttttacaactcgattac-aaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagact 688  Q
    ||||||| ||||||||| ||||| ||||||||||||| | ||||||| |||||||||||| |||||||||||||| |||| |||||||||||| | | ||    
T  20961935 tcagagtattacaactcaattacaaaagtccaactctaaaatcaaagagatataagagtgtctcacaaataacaacgacagactaaaaccctagatggct 20961836  T
Q  689 cttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctg 748  Q
    ||||||  ||||| |||||||||  | |||||||| |  |||| |  |||||||||||||    
T  20961835 cttttc--aattgcggcttcagtagtgaattaggtctcctgtctttgtttatatagcctg 20961778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 317 - 625
Target Start/End: Original strand, 15962279 - 15962588
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 416  Q
    |||||||  ||||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||| |  ||    | |||||    
T  15962279 ggtgcaatgtcacctacatctaagg-ctaccaagctaggaaggaaattcactatagtagtatcaatttgaagcatacataaaaaccctcg---gtctact 15962374  T
Q  417 aacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaacc-agt 509  Q
    |   ||||||||||||||| || ||||||||||||||||| |||||| ||||   |||     ||||||   |  | |||||||||||||||| || |||    
T  15962375 ac--tctcacttaatcactacctgtgtaatttctacctaagactctcctagtcctagatatgagatcccttactcacttcctcttaatcacaatcccagt 15962472  T
Q  510 gaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgat 609  Q
    || ||| ||  |||||  | |  | ||||||||| | ||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||| |     
T  15962473 gatcgttctaaaagtaacaactgaaatggagacactctcctaaactaagaatcaacttgtgcttacaagcttcgagagattcagagttttacaactcaac 15962572  T
Q  610 tacaaagtccaactct 625  Q
    ||||||||||||||||    
T  15962573 tacaaagtccaactct 15962588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 558 - 866
Target Start/End: Complemental strand, 23432998 - 23432689
Alignment:
Q  558 gaatcaactcgtgcttacaagcttagagagatt-cagagttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagtggctcac 654  Q
    |||||||||||||||||||||||| ||| |||| |  ||  ||||||||| | ||||||||||| |||  ||  |||||  ||||||||||||| |||||    
T  23432998 gaatcaactcgtgcttacaagctttgagtgatttctaagaattacaactcaactacaaagtccagctca-atgcatcaacatgatataagagtgactcac 23432900  T
Q  655 aaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgt 753  Q
    || ||||||||| || |||||||||||||| |||||||||  ||||   ||||||||||  ||||||||| ||  ||| | ||||||||||||||  ||     
T  23432899 aattaacaaagaacagactaaaaccctaaatgactcttttacaaatgacggcttcagtgaacaattaggtcttgagtctttctttatatagcctg-atgc 23432801  T
Q  754 tgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaag-tattctgaagcatatcagatgtttccttaaatgtt 852  Q
      ||||  ||||||||||||||| ||||  ||  ||||||||||| || |||| |||||| | | | |||||||||| ||| ||||||| ||||||||||    
T  23432800 gaaatgaacttgatgcacaaatccggct--aatcatcagctgaatcacaagatatcagcataggtttttctgaagcaaatccgatgtttacttaaatgtt 23432703  T
Q  853 gcaacaacattctt 866  Q
    ||||||||||||||    
T  23432702 gcaacaacattctt 23432689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 10082431 - 10082344
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||| |||| |||||||||||||||    
T  10082431 agttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaattcactgtgataatattaatttgaagcatacataaaa 10082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 312 - 399
Target Start/End: Complemental strand, 10189356 - 10189269
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    |||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||    
T  10189356 agttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaattcactatgataatattaatttgaagcatacataaaa 10189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 42245063 - 42245164
Alignment:
Q  351 ccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttc 449  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||     | |||||| ||||||||||||||||| || ||||||||||    
T  42245063 ccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----ggtctactatcttctcacttaatcactaccagtgtaatttc 42245158  T
Q  450 taccta 455  Q
    ||||||    
T  42245159 taccta 42245164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 823 - 866
Target Start/End: Complemental strand, 20961707 - 20961664
Alignment:
Q  823 tgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  20961707 tgaagcagatcagatgtttccttaaatgttgcaacaacattctt 20961664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 10082149 - 10082100
Alignment:
Q  635 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 684  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  10082149 gtgatacaagagtggctcacaaataacaaggacaaactaaaaccctaaaa 10082100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 10189074 - 10189025
Alignment:
Q  635 gtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 684  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  10189074 gtgatacaagagtggctcacaaataacaaggacaaactaaaaccctaaaa 10189025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 8224854 - 8224897
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  8224854 tcacctacatctgggggctaccaagccaggaaggaaatccacta 8224897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 805 - 866
Target Start/End: Complemental strand, 20975650 - 20975589
Alignment:
Q  805 atttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||||||||||||||  | ||||| | ||| |||||||||||||||||||||| |||||||||    
T  20975650 atttcagcacaagttatttgaagaagatcggatgtttccttaaatgttgcaaaaacattctt 20975589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 369
Target Start/End: Original strand, 18476945 - 18476987
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  18476945 tcacctacatct-ggggctaccaagccaggaaggaaatccacta 18476987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 369
Target Start/End: Complemental strand, 15636004 - 15635974
Alignment:
Q  339 ggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||||||||||||||||||||||    
T  15636004 ggggctaccaagccaggaaggaaattcacta 15635974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 699
Target Start/End: Original strand, 5535545 - 5535630
Alignment:
Q  615 agtccaactctgatatcaaag-tgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaat 699  Q
    |||||| ||||  |||||||| ||||| |||||| ||||||||| ||||| |||  ||||||||||||| |||| ||||| |||||    
T  5535545 agtccagctctagtatcaaaggtgatacaagagtcgctcacaaacaacaaggacggactaaaaccctaatagacacttttgtaaat 5535630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 9031538 - 9031482
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  9031538 agttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 9031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 6e-98; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 312 - 891
Target Start/End: Original strand, 32668655 - 32669235
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| |||||||  |||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||||||||||| |||||||||| |   || | |     
T  32668655 agttcggtgcaaagtcacctacatct-ggggctaccaaac-aggaaggaaatttactatggtagtatcaattcgaagaatacataaaaac---catcggt 32668749  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaac 505  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||   |||     ||| |||  |  | |||||||||||||||| |    
T  32668750 ctactagcttctcacttaatcactacccgtgtaatttctacctaagactctcctagtcatagaaatgagattccctactcacttcctcttaatcacaatc 32668849  T
Q  506 c-agtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaac 604  Q
    | ||||| ||||||| ||||| || |||| ||| |||||   ||||| |  ||||||| ||||||||||||| | || ||||||||||||||||||||||    
T  32668850 ccagtgatcgtccttaaagtaataacaaaaatgaagacacactcctaaaataagaatcgactcgtgcttacatgatttgagagattcagagttttacaac 32668949  T
Q  605 tcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatact-aaaaccctaaaagactcttttctaaattgtg 703  Q
    || | |||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||  |||||| || |||| ||      
T  32668950 tcaactacaaagtccaactcaaatatcaaagtgatatgagagtggctcacaaataac-aagacagactaaaaaccctaattgactctcttgtaaaatgca 32669048  T
Q  704 gcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacga 803  Q
    ||||| |||   |||||||| ||  ||| ||||||||||||||||  ||   |||||| |||||||||||||||||||| ||||  ||||||||| ||||    
T  32669049 gcttccgtgacaaattaggtcttaagtcttcctttatatagcctgaatgcataatgggattgatgcacaaatcgggcta-aacatccagctgaatcacga 32669147  T
Q  804 gatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaaccgc 891  Q
     |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||| |||  |||||||||    
T  32669148 aatttcagcacaaatattctaaagcagatcagatgtttccttaaatgttgcaacaacattcttaaggaacacgctaagtataaaccgc 32669235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 295 - 866
Target Start/End: Complemental strand, 28045105 - 28044534
Alignment:
Q  295 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 394  Q
    |||||||||  ||||| |||| ||||||| ||||||||||| | |||||||||||| ||| || ||||| |||||| ||| ||||||||||||||||| |    
T  28045105 aggttatttgctgacccagttcggtgcaatttcacctacatatgggggctaccaaggcagaaatgaaatccactatagtagtatcaattcgaagcatata 28045006  T
Q  395 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctctagtgtga-----gagatccccctccaagtt 489  Q
    ||||||  ||||| |||  |||||||||||||||||||||| ||||||  |||||||||||| |||| |||||   |     |||| ||| |||  | ||    
T  28045005 taaaagtcttcacaagctcactaacttctcacttaatcactacccgtggtatttctacctaagactc-ctagtcctaaatatgagaacccactc--actt 28044909  T
Q  490 cctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagaga 588  Q
    ||||||| ||||| |||||||||  |||||||| | || | |||||||||||||| | ||||||| |||||||||||||||||||| |||||||||| ||    
T  28044908 cctcttagtcacagaccagtgacaatccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcttaaaagcttagag-ga 28044810  T
Q  589 ttcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagact 688  Q
    |||| ||| ||||||||| |||||||||||||||||| |||||||||  |||| |||||| | ||||||||||||||||| ||| |||||||| | ||||    
T  28044809 ttcaaagtattacaactcaattacaaagtccaactctaatatcaaagaaatatgagagtgtcacacaaataacaaagacagactgaaaccctagatgact 28044710  T
Q  689 cttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaa 788  Q
    |||||   |||||| |||||||||   |||||||| || ||||    |||||||||||||  |||||||| ||| |||||||||| |  ||||| ||| |    
T  28044709 ctttt-gcaattgtagcttcagtgaataattaggtcttctgtctctatttatatagcctgaatgttgaataggcgtgatgcacaagttcggcta-aac-a 28044613  T
Q  789 tcagc-tgaattacgagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||||| | |||  ||| |||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  28044612 tcagcttaaatctcgatatttcagcacaaatattctgaagcagattggatgtttccttaaatgttgcaacaacattctt 28044534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 317 - 866
Target Start/End: Complemental strand, 13730540 - 13729987
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 416  Q
    |||| |||||||| ||  ||| |||||||||| || |||||||||||||||||| ||  |||||| ||||||||||||||||| |   | |||| ||| |    
T  13730540 ggtgaaacttcacttatgtctgggggctaccatgctaggaaggaaattcactatagtggtatcaactcgaagcatacataaaaac---cgccagtctaat 13730444  T
Q  417 aacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtgaga-----gatccccctccaagttcctcttaatcacaaacc-agt 509  Q
    |  |||||||||||||| | ||||| ||||||||||||||  | ||| ||||   |||     |||||||  |  | || ||||||||||||| || | |    
T  13730443 agattctcacttaatcattacccgtctaatttctacctaaggcactcctagtcctagatatgagatcccctactcactttctcttaatcacaatcccaat 13730344  T
Q  510 gaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgat 609  Q
    || ||||||  |||||  | || | ||||||||| | ||||| || |||||| ||||| ||||||||||||| |||||||| |||| ||||||||||       
T  13730343 gatcgtcctaaaagtaacaacagaaatggagacactctcctaaactaagaattaactcttgcttacaagctttgagagatttagagatttacaactcagc 13730244  T
Q  610 tacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttca 709  Q
    ||||||||| |||||| ||||||| | ||||| |||| |||||||||  |||||||||| ||||||| | |||  || |||||| |||||||||||||||    
T  13730243 tacaaagtcaaactctaatatcaaggagatatgagaggggctcacaa--aacaaagacagactaaaagcttaattgattcttttgtaaattgtggcttca 13730146  T
Q  710 gtg---ctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagat 806  Q
      |      ||| |||| ||  ||| |||||||||||| |||  ||   |||| ||||||||||||||| ||||| | |||  ||||||||| | || ||    
T  13730145 aagacaaataataaggtcttgagtcttcctttatatagtctgaatgcataatgagcttgatgcacaaatagggcttg-acatccagctgaatcatgaaat 13730047  T
Q  807 ttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  13730046 ttcaacacaaatattctgaagcagatcagatgtttccttaaatgttacaacaacattctt 13729987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 312 - 745
Target Start/End: Original strand, 26895601 - 26896036
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| || ||| ||||||||| |||||||||||| | |   |  | |     
T  26895601 agtttggtgcaacttcacctacatct-ggggttaccaagccagaaaggaaattcacaatagtagtatcaattcaaagcatacataataac---cctcggt 26895696  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctagtgtgagagatc----cccct-ccaagttcctcttaatcacaa-a 504  Q
    |||||| ||||||||||||||||| | |||| ||||||||||||| ||||| |||||   ||| |||    ||||| | || ||||| ||||||| ||      
T  26895697 ctactatcttctcacttaatcactactcgtgaaatttctacctaagactctcctagtcctagatatcaaatcccctactaacttccttttaatcaaaatc 26895796  T
Q  505 ccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaac 604  Q
    ||||||| ||||||  |||||  | ||   ||  ||||| | |||||  |  ||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  26895797 ccagtgatcgtcctaaaagtaacaacattaattaagacactctcctaagctgagaatcaactcgtgcttacaagctttgagtgattcaaagttttacaac 26895896  T
Q  605 tcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtgg 704  Q
    || | |||||||| |||||   ||||| |||  |||  |||||||||||||||||||||||||| |||||||||||||  ||||||||| | ||||| ||    
T  26895897 tcaactacaaagttcaacttcaatatc-aagaaatacgagagtggctcacaaataacaaagacaaactaaaaccctaattgactcttttgtgaattgcgg 26895995  T
Q  705 cttcagtgctcaattaggtattttgtcatcctttatatagc 745  Q
    ||| ||||   | |||||| || |||| |||||||||||||    
T  26895996 ctttagtgacaacttaggtcttatgtcttcctttatatagc 26896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 488 - 691
Target Start/End: Complemental strand, 28044039 - 28043834
Alignment:
Q  488 ttcctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaa-tcaactcgtgcttacaagcttagag 585  Q
    ||||||||| ||||| ||||||||||||||||||| |  | | |||||||||||||| |    |||| ||| || |||||||||||||| ||||||| ||    
T  28044039 ttcctcttagtcacagaccagtgaccgtccttgaaatctttaacaaatatggagacactcaattagaaaaaaaaatcaactcgtgcttaaaagcttatag 28043940  T
Q  586 agattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaag 685  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||| | ||| |||||||| | |    
T  28043939 agattcagagtattacaactcaattacaaagtccaactctaatatcaaagagatatgagagtggcacacaaataacaaagatagactgaaaccctagatg 28043840  T
Q  686 actctt 691  Q
    ||||||    
T  28043839 actctt 28043834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 317 - 462
Target Start/End: Complemental strand, 3357149 - 3357004
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctact 416  Q
    |||||||  ||||||| |||||||||||||||||||| ||||||||||||||||  || ||| | || ||||| ||||||||| || || |||| |||||    
T  3357149 ggtgcaatgtcacctatatctaggggctaccaagccaagaaggaaattcactataatagtattagtttgaagcgtacataaaaactatctccagtctact 3357050  T
Q  417 aacttctcacttaatcactgcccgtgtaatttctacctaaaactct 462  Q
    | |||| ||| |||||||| ||||||||||||||| |||| |||||    
T  3357049 agcttcgcacctaatcactacccgtgtaatttctatctaagactct 3357004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 615 - 888
Target Start/End: Original strand, 13553653 - 13553925
Alignment:
Q  615 agtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgct 714  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||||  |||| | |||||||||||| ||| ||||| |||||  |||||| || | |    
T  13553653 agtccaactctaatatcaacgtgatacaagagtggctcacaaataacagggacaaagtaaaaccctaaatgacacttttgtaaatgatggctttaggggt 13553752  T
Q  715 caattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagat-ttcagca 813  Q
     ||||  || ||   || || |||||||||| ||  ||  |||||||||||||||||||||||||| | ||||  | ||||||||||  | | |||||||    
T  13553753 gaatttagttttgattcttcatttatatagcttgaatgaagaatgggcttgatgcacaaatcgggcca-aacatcctgctgaattacacggtcttcagca 13553851  T
Q  814 caagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaac 888  Q
    ||| |||||||||||| || | |||||| ||||||| || ||||| ||  ||| |||||||||| |||| |||||    
T  13553852 caa-tattctgaagcagataaaatgttttcttaaatattacaacatcacacttaagaaacacgtcaaacttaaac 13553925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 553 - 780
Target Start/End: Original strand, 10230510 - 10230738
Alignment:
Q  553 acaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctc 652  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||||||||||| | || | ||| ||||||  ||||||||| ||||  || |||||||    
T  10230510 acaaagaatcaactcgtgcctacaaattttgagtgattcagagttttacaactcaactatatagttcaactcaaatatcaaagcgatacgagggtggctc 10230609  T
Q  653 acaaataacaaagaca-tactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgctt 751  Q
    |||||| |||||||||   | |||||| |||  ||| ||||  ||||||| ||||||| |  | |||||||| ||   || |||||||||||||||  ||    
T  10230610 acaaattacaaagacaggccaaaaaccttaattgaccctttagtaaattgcggcttcaatagtaaattaggtcttgaatcttcctttatatagcctaatt 10230709  T
Q  752 gttgaatgggcttgatgcacaaatcgggc 780  Q
    |   |||||||||||||||||||||||||    
T  10230710 gcataatgggcttgatgcacaaatcgggc 10230738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 802 - 890
Target Start/End: Original strand, 12464603 - 12464691
Alignment:
Q  802 gagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaaccg 890  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||  ||||||||    
T  12464603 gagattccagcacaaatattctgaagcaaatcagatgtttccttaaatgttgcaacaacattcttaaggaacacgctaagtataaaccg 12464691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 312 - 455
Target Start/End: Original strand, 12464168 - 12464308
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat-aaaagctttcaccag 410  Q
    |||| ||||||||||||||||||| | || |||||| || ||||||||||||||||||  ||| ||||||||| || ||||||| |||| ||||     |    
T  12464168 agttcggtgcaacttcacctacatgtgggagctaccgagtcaggaaggaaattcactaaagtagtatcaattcaaaacatacataaaaatcttt----gg 12464263  T
Q  411 cctactaacttctcacttaatcactgcccgtgtaatttctaccta 455  Q
     |||||| ||||||||||||||||| |||||| ||||||||||||    
T  12464264 tctactagcttctcacttaatcactacccgtgcaatttctaccta 12464308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 312 - 451
Target Start/End: Original strand, 13553352 - 13553488
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| |||||||| |||||||| | | |||||||||| |||||||||||||||||||||  || ||| | || ||||||||||||||| |   || | |     
T  13553352 agttgggtgcaacatcacctacgtttgggggctaccatgccaggaaggaaattcactataatagtattattttgaagcatacataaaaac---catcggt 13553448  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttcta 451  Q
    |||||||||||  || |||||||| || ||||||||||||    
T  13553449 ctactaacttcgtacctaatcactacctgtgtaatttcta 13553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 807 - 866
Target Start/End: Complemental strand, 28043736 - 28043677
Alignment:
Q  807 ttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    |||||||||| |||| ||||||| ||  ||||||||||||||||||||||||||||||||    
T  28043736 ttcagcacaaatattttgaagcagattggatgtttccttaaatgttgcaacaacattctt 28043677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 28623543 - 28623580
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28623543 tcacctacatctaggggctaccaagccaggaaggaaat 28623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 34657296 - 34657253
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  34657296 tcacctacatctaggggctaccaagccaagaaggaaatccacta 34657253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 711
Target Start/End: Original strand, 2401582 - 2401664
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagt 711  Q
    ||||| |||||| || |||| || ||||||||||| |||| ||||||| |||||| |||||| |||| ||||| |||||||||    
T  2401582 atcaaggtgatacaaaagtgtctaacaaataacaaggacagactaaaatcctaaatgactctattctcaattgcggcttcagt 2401664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 22917770 - 22917700
Alignment:
Q  642 aagagtggctcacaaataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagt 711  Q
    |||||||||||||||||||||||| ||| |||||||| ||| | ||| ||||||| ||||| |||||||||    
T  22917770 aagagtggctcacaaataacaaagtacaaactaaaactctagatgacacttttctcaattgcggcttcagt 22917700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 15038349 - 15038405
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  15038349 agtttggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 15038405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 16176560 - 16176653
Alignment:
Q  278 acaagaagtaaaagaca-aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||||||||||||| | | | ||| || ||| ||||| |||| ||||||||||| |||   ||||||||||||||||||||| ||||||||    
T  16176560 acaagaagtaaaagacacaaggtgtttgttaacccagtttagtgcgacttcacctacgtctgcaggctaccaagccaggaaggaatttcactat 16176653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 20003138 - 20003188
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    |||| |||||||| |||||||| | |||||||||||||||||||||||||||    
T  20003138 agttcggtgcaacgtcacctactt-taggggctaccaagccaggaaggaaat 20003188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 22884971 - 22884901
Alignment:
Q  642 aagagtggctcacaaataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagt 711  Q
    |||||||||||||||||||||||| ||| |||||||| ||| | ||| ||||||| ||||| | |||||||    
T  22884971 aagagtggctcacaaataacaaagtacaaactaaaactctagatgacacttttctcaattgcgacttcagt 22884901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 22885289 - 22885243
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    |||||||| |||||||||||| |||||  ||||||||||||||||||    
T  22885289 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaat 22885243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 16137739 - 16137683
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||| |||||| |||||||| |||  |||||||||||||||||||||||| |||||    
T  16137739 agtttgatgcaacgtcacctac-tctgagggctaccaagccaggaaggaaatccacta 16137683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 305 - 681
Target Start/End: Original strand, 50057515 - 50057897
Alignment:
Q  305 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 404  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  50057515 ttgacccagttcagtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactatagtaatatcaattcgaagcatacataaaagcttt 50057614  T
Q  405 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--ctagt-----gtgagagatccccctccaagttcctcttaa 497  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||| |||||  |||||      |  |||| ||| |||  | |||||||||     
T  50057615 caccaacctactaacttctcacttaatcactgtccgtggaatttttacctaagactctcactagtcctaaatatgagaacccactc--acttcctcttag 50057712  T
Q  498 tcacaaaccagtgaccgtccttgaagtac-tatcaaat-atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagag 595  Q
    ||||| ||||||||||||||||||| | | || ||||| ||||| ||| | | || || ||||| |||||||||||||| ||||||||||||||||||||    
T  50057713 tcacagaccagtgaccgtccttgaaatccttaacaaataatggatacactct-cttgaaaaagattcaactcgtgcttaaaagcttagagagattcagag 50057811  T
Q  596 ttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 681  Q
      ||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  50057812 cattaaaactcaaatacaaagtccaactctaatatcaaagtgatatgagagtggctcacaaataacaaagacatactaaaatccta 50057897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 305 - 712
Target Start/End: Complemental strand, 951794 - 951385
Alignment:
Q  305 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagcttt 404  Q
    ||||| |||||  |||||||||||||||||| | ||||||||||| |||| ||| |||| |||||| | | ||| |||||||||||||||||||||| ||    
T  951794 ttgacatagttctgtgcaacttcacctacatatgggggctaccaatccagaaagaaaatccactatagcagtataaattcgaagcatacataaaagcctt 951695  T
Q  405 caccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--------ctag-tgtgagagatccccctccaagttcctctt 495  Q
     |||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||        |||  | ||||||   ||| | ||  ||||||||    
T  951694 gaccagcctactaacttctcacttaatcactacccgtggtatttctacctaagactctaattaatcctaaatatgagag---cccattcac-ttcctctt 951599  T
Q  496 aatcacaaaccagtgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagag 595  Q
    | | | ||||||||||||||   || | |  || |||||||||||||| | |||||||  | |||||  || ||||||| ||||||||||| || |||||    
T  951598 agttaaaaaccagtgaccgt---tgcaatcttaacaaatatggagacactctcctagaacatgaatcttcttgtgcttaaaagcttagagatatacagag 951502  T
Q  596 ttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttct 695  Q
    | ||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| | |||||||||||    
T  951501 tattacaactcaattacaaagtccaactctaatatcaaagtgatatgagagtgactcacaaataaaaaagacagactaaaaccctagatgactcttttct 951402  T
Q  696 aaattgtggcttcagtg 712  Q
    |||||| ||||||||||    
T  951401 aaattgcggcttcagtg 951385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 299 - 462
Target Start/End: Complemental strand, 19748761 - 19748599
Alignment:
Q  299 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 398  Q
    ||||| ||||||||||| |||||||||||||||| || | | |||||||| || ||||| ||||||||||||  || |||||||||||||||||||||||    
T  19748761 tatttgttgacctagttcggtgcaacttcacctatattt-gcggctaccatgctaggaatgaaattcactataatagtatcaattcgaagcatacataaa 19748663  T
Q  399 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 462  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  19748662 agctttcaccagcctactaacttctcacttaatcactagccgtgcaatttctacctaagactct 19748599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 629 - 866
Target Start/End: Complemental strand, 18838337 - 18838116
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattt 727  Q
    ||||| |||||| ||||||||||||||||||||||||| || |||||||||||||| |||               ||||| |||| |||||||||| |||    
T  18838337 atcaacgtgatacaagagtggctcacaaataacaaagaacagactaaaaccctaaatgac---------------ggctttagtgatcaattaggtcttt 18838253  T
Q  728 tgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaagtattctgaag 827  Q
     ||| ||||||||||||||||  ||  ||||||| |||||||| ||||| |||||  |  ||||| ||||| ||||||||||||||||| |||||||| |    
T  18838252 agtcttcctttatatagcctgaatgcagaatgggattgatgcagaaatctggcta--atcatcagttgaatcacgagatttcagcacaaatattctgacg 18838155  T
Q  828 catatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    || |||| || ||||||||||||||||||||||||||||    
T  18838154 cagatcaaatttttccttaaatgttgcaacaacattctt 18838116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 636 - 866
Target Start/End: Original strand, 24549568 - 24549797
Alignment:
Q  636 tgatataagagtggctcacaaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatc 734  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| |||||| ||||||||| | ||    ||||||||||  ||||||||| ||  ||| |     
T  24549568 tgatacaagagtgactcacaaataacaaagaacatactaaaatcctaaatgactcttttatgaacgaaggcttcagtgaacaattaggtcttgagtcttt 24549667  T
Q  735 ctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaag-tattctgaagcatatc 833  Q
    ||||||||| |||| | ||  ||||  ||||||||||||||  |||||  |  ||||||||||| |||||||||||||||| | |||||||||||| |||    
T  24549668 ctttatataacctgat-gtgaaatgaacttgatgcacaaatttggcta--atcatcagctgaatcacgagatttcagcacatgatattctgaagcaaatc 24549764  T
Q  834 agatgtttccttaaatgttgcaacaacattctt 866  Q
     |||||||||||||| |||||||||||||||||    
T  24549765 ggatgtttccttaaacgttgcaacaacattctt 24549797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 23600576 - 23600449
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 407  Q
    |||||||| ||||||||||||||||||||| | |||||||||| || |||| ||||||||||| ||| |||||||||||||||| |||||||||| || |    
T  23600576 acctagttcggtgcaacttcacctacatctggaggctaccaaggcaagaagaaaattcactatagtagtatcaattcgaagcatgcataaaagctatctc 23600477  T
Q  408 cagcctactaacttctcacttaatcact 435  Q
     || | |||| |||||||||||||||||    
T  23600476 tagtccactagcttctcacttaatcact 23600449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 636 - 866
Target Start/End: Original strand, 51110640 - 51110870
Alignment:
Q  636 tgatataagagtggctcacaaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatc 734  Q
    ||||| ||||||||||||||| ||||||||| || ||||||||||||||  ||||||||  |||   |||  ||||||  ||||||||| ||  ||| ||    
T  51110640 tgatacaagagtggctcacaagtaacaaagaacaaactaaaaccctaaattactcttttgcaaacgttggtatcagtgagcaattaggtcttaagtcttc 51110739  T
Q  735 ctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaag-tattctgaagcatatc 833  Q
    |||||||||||||| ||||  ||||  |||||| | |||  | | |||  |  || || ||||| |||||||||||||||||  |||||||||| | |||    
T  51110740 ctttatatagcctgattgtgaaatgaacttgatacgcaagaccgacta--atcattagttgaatcacgagatttcagcacaaaatattctgaagtagatc 51110837  T
Q  834 agatgtttccttaaatgttgcaacaacattctt 866  Q
     ||||||||||||||||||||||||||||||||    
T  51110838 cgatgtttccttaaatgttgcaacaacattctt 51110870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 547 - 708
Target Start/End: Complemental strand, 14911780 - 14911619
Alignment:
Q  547 tcctagacaaagaatcaactcgtgcttacaagctta-gagagattcagagttttacaactcgattacaaagtccaactctgat--atcaaag--tgatat 641  Q
    ||||||||||||||||||||| |||||||||||||  ||| ||||| |||||| ||||||| | ||||  |||||||||| ||  ||||| |  |||||     
T  14911780 tcctagacaaagaatcaactcttgcttacaagcttttgagtgattctgagttt-acaactcaactaca--gtccaactct-atgcatcaacgcgtgatac 14911685  T
Q  642 aagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttc 708  Q
    |||||||||||||||||||||| |||| ||||||||||| |||||| ||||| |||||  |||||||    
T  14911684 aagagtggctcacaaataacaaggacaaactaaaaccct-aaagacacttttgtaaatgatggcttc 14911619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 49086749 - 49086677
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 384  Q
    |||| |||||||| |||||||||| | ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  49086749 agttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaattcactatagtagtatcaattc 49086677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 347 - 455
Target Start/End: Original strand, 13799962 - 13800067
Alignment:
Q  347 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 445  Q
    |||| ||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| |||||||||||||||||  | ||||||    
T  13799962 caagtcaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaacggtgtaa 13800057  T
Q  446 tttctaccta 455  Q
    ||||||||||    
T  13800058 tttctaccta 13800067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 801 - 866
Target Start/End: Original strand, 50058017 - 50058082
Alignment:
Q  801 cgagatttcagcacaag-tattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||| ||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||||||    
T  50058017 cgatatttcagcacaagatatt-tgaagcagataagatgtttccttaaatgttgcaacaacattctt 50058082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 463
Target Start/End: Original strand, 51110383 - 51110502
Alignment:
Q  339 ggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcc 438  Q
    ||||||||||||||| |||| |||||||||| | || ||||||||  |||||||||||||| |  ||    | |||| ||||||||||||||||||| ||    
T  51110383 ggggctaccaagccaagaagaaaattcactaag-tagtatcaatttaaagcatacataaaaaccctcg---gtctac-aacttctcacttaatcactacc 51110477  T
Q  439 cgtgtaatttctacctaaaactctc 463  Q
     ||| ||||||||||||||||||||    
T  51110478 tgtgcaatttctacctaaaactctc 51110502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 24549304 - 24549362
Alignment:
Q  340 gggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    |||||||||| |||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  24549304 gggctaccaaaccaggaaggaaattcacta-agtagtatcaattcaaagcatacataaaa 24549362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 45599481 - 45599430
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  45599481 ggtgcaacgtcacctac-tctcggggctaccaagccaggaaggaaatccacta 45599430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 49086524 - 49086478
Alignment:
Q  535 atggagacattatcctagacaaagaatcaactcgtgcttacaagctt 581  Q
    ||||||||| | ||||||||||||||||||||| |||||| ||||||    
T  49086524 atggagacactctcctagacaaagaatcaactcttgcttaaaagctt 49086478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 825 - 866
Target Start/End: Complemental strand, 951282 - 951241
Alignment:
Q  825 aagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||||| ||| |||||||||||| |||||||||||||||||||    
T  951282 aagcagatctgatgtttccttagatgttgcaacaacattctt 951241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 4650384 - 4650312
Alignment:
Q  297 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||| || | ||||||  ||||||| |||||||||| |||||||| ||||| |||||||||||| ||||||    
T  4650384 gttatttgttaatctagttatgtgcaacgtcacctacatttaggggct-ccaagtcaggaaggaaatccactat 4650312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 33062387 - 33062443
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| |||||||||||||||| |||||||| |||||    
T  33062387 agttcggtgcaacgtcacctac-tctgggggctaccaagccagaaaggaaatccacta 33062443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 295 - 681
Target Start/End: Original strand, 18534 - 18926
Alignment:
Q  295 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 394  Q
    ||||||||| |||||| |||| ||||||||||||||||| | | ||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||    
T  18534 aggttatttgttgacccagttcggtgcaacttcacctactttt-ggggctaccaagccatgaaggaaatccactatagtagtatcaattcgaagcataca 18632  T
Q  395 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc-tagtgtga-----gagatccccctccaagt 488  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||||  |||||||||||  |||||| ||||   |     |||| ||| |||  | |    
T  18633 taaaatctttcaccaacctactaacttctcacttaatcactacccgtggtatttctacctacgactctcatagtcctaaatatgagaacccactc--act 18730  T
Q  489 tcctcttaatcacaaaccagtgaccgtccttgaagtact-atcaaatatggagacattatcctagacaaagaa--tcaactcgtgcttacaagcttagag 585  Q
    |||||||||||||| ||||||||||||||||||| | || |  ||||||||||||| | ||||||| ||| ||  |||||||||||||| ||||||||||    
T  18731 tcctcttaatcacataccagtgaccgtccttgaaatccttagtaaatatggagacactctcctagaaaaaaaaaatcaactcgtgcttaaaagcttagag 18830  T
Q  586 agattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaacccta 681  Q
    ||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||| |   |||||||||||||||||||||| ||||||||||||    
T  18831 agattcagagcattacaactcaattacaaagtccaactctaatatcaaagtgatatgatcatggctcacaaataacaaagacaaactaaaacccta 18926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 801 - 866
Target Start/End: Original strand, 19045 - 19110
Alignment:
Q  801 cgagatttcagcacaagtattct-gaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||| ||||||||||||| || || |||||| |||||||||||||||||||||||| |||||||||||    
T  19045 cgatatttcagcacaag-atacttgaagcagatcagatgtttccttaaatgttgctacaacattctt 19110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 165; Significance: 9e-88; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 295 - 712
Target Start/End: Complemental strand, 2253 - 1837
Alignment:
Q  295 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 394  Q
    ||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||| || |||  || |||||||||||||||||||    
T  2253 aggttatttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagccaggaaagaaatccattatactagtatcaattcgaagcataca 2154  T
Q  395 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct-ctagtgtgagagatccccctcca---agttc 490  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||||| ||||| ||| |   | | ||     ||||   | |||    
T  2153 taaaagctttcaccagcctactaacttctcacttaatcactacctgtggtatttctacctaagactctcctaatcctaaatatgagaatccaatcacttc 2054  T
Q  491 ctcttaatcacaaaccagtgaccgtccttgaagtac-tatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagat 589  Q
    |||||| | ||| ||||||||||||||||||| | | || |||||||||||||| | ||||||| ||||||||||||||||| || ||||||||||||||    
T  2053 ctcttagttacagaccagtgaccgtccttgaaatccttaacaaatatggagacactctcctagaaaaagaatcaactcgtgcctaaaagcttagagagat 1954  T
Q  590 tcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactc 689  Q
    ||||||  ||||||||| |||||||||||||||     ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||| | |||||    
T  1953 tcagagcattacaactcaattacaaagtccaac-----tattaaagtgatatgagagtggctcacaaataacaaagacagactaaaactctagatgactc 1859  T
Q  690 ttttctaaattgtggcttcagtg 712  Q
    ||||   ||||||||||||||||    
T  1858 tttt-acaattgtggcttcagtg 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 825 - 866
Target Start/End: Complemental strand, 1735 - 1694
Alignment:
Q  825 aagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||||| |||| |||||||||||||||||||||||||||||||    
T  1735 aagcagatcatatgtttccttaaatgttgcaacaacattctt 1694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 9e-88; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 361 - 861
Target Start/End: Complemental strand, 17099748 - 17099236
Alignment:
Q  361 aattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaact 460  Q
    |||||||| | ||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||  |||||| ||||||||||||| |||    
T  17099748 aattcactgtagtagtatcaattcgaagtatacataaaagctatcaccagcctacgaacttctcacttaatcaccacccgtgcaatttctacctaagact 17099649  T
Q  461 ctc--------tag-tgtgagagatccccctccaagttcctcttaatcacaaa-ccagtgaccgtccttgaagta-ct--atcaaa--tatggagacatt 545  Q
    |||        ||| | |||||||||||| |||   ||||||||| ||||| | ||||||||||||||| ||||| ||  | ||||  |||||||||| |    
T  17099648 ctcactagttctagatatgagagatccccatcccgcttcctcttagtcacagatccagtgaccgtccttaaagtaacttgaacaaaaatatggagacact 17099549  T
Q  546 atcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataaga 645  Q
     |||||||||| ||||||||||||||||| |||||| || ||||||||||||||||||||| || ||||||||||||||| ||||||| |||| ||||||    
T  17099548 ctcctagacaatgaatcaactcgtgcttaaaagctttgacagattcagagttttacaactcaataacaaagtccaactctaatatcaaggtgacataaga 17099449  T
Q  646 gtggctcacaaataacaaagacatactaaaaccctaaaagac-tcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatag 744  Q
    || ||||||||||||||| || | |||||| |||||||| || |||||||  ||||| ||||||||||||||||||||| || || | |  |||||||||    
T  17099448 gttgctcacaaataacaacgatagactaaagccctaaaaaacttcttttc--aattgcggcttcagtgctcaattaggtcttctgcctttgtttatatag 17099351  T
Q  745 cctgcttgttgaatgggcttgatgcaca-aatcgggctagaacaatcagctgaattacgagatttcagcacaagtattctgaagcatatcagatgtttcc 843  Q
    | |||||  |||||||||||||||| || |||| ||||  ||  ||||||||||| |||| | |||||||||  |||||||||| | |||| |||||| |    
T  17099350 catgcttcctgaatgggcttgatgcgcagaatc-ggct--aaagatcagctgaatcacgataattcagcacatatattctgaagtagatcaaatgttttc 17099254  T
Q  844 ttaaatgttgcaacaaca 861  Q
    ||||||||||||||||||    
T  17099253 ttaaatgttgcaacaaca 17099236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 599 - 862
Target Start/End: Original strand, 15117081 - 15117342
Alignment:
Q  599 tacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa-gactcttttctaa 697  Q
    |||||||| | |||| |||||| |||| ||||||| | |||| |||||||||| ||||| || || |||| ||||||||||||||| ||| ||||| |||    
T  15117081 tacaactctactacatagtccagctctaatatcaaggggatacaagagtggctgacaaa-aataaggacagactaaaaccctaaaaagacacttttttaa 15117179  T
Q  698 attgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaa 797  Q
    ||    |||| |||  ||||||||||  |  ||| ||||||| |||||||| |||  ||| | |||||||||||||||  |||||  || ||||||||||    
T  15117180 atgacagctttagtaatcaattaggtcatgagtcttcctttaaatagcctgattgcagaaagagcttgatgcacaaattcggcta--accatcagctgaa 15117277  T
Q  798 ttacgagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacat 862  Q
    | |||| ||||||||||||  ||| ||||| | ||||||| ||||||||||||||||||||||||    
T  15117278 tcacgatatttcagcacaataattatgaagtagatcagatatttccttaaatgttgcaacaacat 15117342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 299 - 463
Target Start/End: Original strand, 15116780 - 15116939
Alignment:
Q  299 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 398  Q
    ||||| |||||| ||||  ||||||| |||||||| ||| |||||||||||| ||||||||||||||||||  ||| ||||||||| || ||||||||||    
T  15116780 tatttgttgacccagttcagtgcaacctcacctacgtctgggggctaccaagtcaggaaggaaattcacta-agtattatcaattcaaatcatacataaa 15116878  T
Q  399 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactctc 463  Q
    | |   |  | | |||| ||||||||||||||||||  |||||| ||||||||||||| ||||||    
T  15116879 aac---cctcggtctac-aacttctcacttaatcaccacccgtgcaatttctacctaagactctc 15116939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 419 - 611
Target Start/End: Original strand, 19663715 - 19663913
Alignment:
Q  419 cttctcacttaatcactgcccgtgtaatttctacctaaaactct--------ctag-tgtgagagatccccctccaagttcctcttaatcaca-aaccag 508  Q
    ||||||||||||||||| |||||||||||||||||||| |||||        |||| | |||||||||||||||| | ||||||||| ||| | | ||||    
T  19663715 cttctcacttaatcactacccgtgtaatttctacctaagactctcactattcctagatatgagagatccccctcccacttcctcttagtcatagatccag 19663814  T
Q  509 tgaccgtccttgaagtactatcaaatatggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcga 608  Q
    ||||||||||| |   | || || | ||||||||| | ||| ||| ||||||| ||||| |||||||||||||  || ||||||||| |||||||||| |    
T  19663815 tgaccgtccttaa---aataacataaatggagacactctccaagaaaaagaattaactcttgcttacaagctttaagtgattcagag-tttacaactcaa 19663910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 17920941 - 17920885
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  17920941 agttcggtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 17920885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 384
Target Start/End: Original strand, 19663576 - 19663661
Alignment:
Q  299 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 384  Q
    ||||| |||||| |||| |||||||| |||||||||| |  ||||||| |||||| ||| ||||||||||||| || |||||||||    
T  19663576 tatttgttgacccagttcggtgcaacctcacctacatatgcgggctacaaagccatgaatgaaattcactatgatagtatcaattc 19663661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 22184742 - 22184705
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22184742 tcacctacatctaggggctaccaagccaggaaggaaat 22184705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 11204723 - 11204779
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  11204723 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 11204779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 24394638 - 24394691
Alignment:
Q  317 ggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    |||||||| |||||||||||| |||||  |||||||||||||||||| ||||||    
T  24394638 ggtgcaacgtcacctacatctgggggcatccaagccaggaaggaaatccactat 24394691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 26183392 - 26183336
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  26183392 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatacacta 26183336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 22404897 - 22404863
Alignment:
Q  335 tctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||||||||||||||||||||| |||||    
T  22404897 tctaggggctaccaagccaggaaggaaatccacta 22404863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 7898072 - 7898016
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  7898072 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 7898016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 711
Target Start/End: Complemental strand, 22652151 - 22652074
Alignment:
Q  635 gtgatataagagtggctcacaaataa-caaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagt 711  Q
    |||||| |||||||||||||||| || ||| ||| || |||||||||||| |||| | |||| ||||| |||||||||    
T  22652151 gtgatacaagagtggctcacaaaaaagcaaggacgtaataaaaccctaaatgactttattctcaattgcggcttcagt 22652074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 3e-78; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 295 - 866
Target Start/End: Original strand, 13268830 - 13269406
Alignment:
Q  295 aggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcataca 394  Q
    ||||| ||| || ||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||||  ||| |||||||| ||||||||||    
T  13268830 aggttgtttgttcacccagttcggtgcaacttcacctacatctgggggctaccaagtcaggaaggaaatccactacagtagtatcaatttgaagcataca 13268929  T
Q  395 taaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct--ctagtgtga-----gagatccccctccaag 487  Q
    ||||||| ||||||  ||||||||||||||||||||||| | ||||||  ||||||| |||| | |||  |||||   |     |||| ||| |||  |     
T  13268930 taaaagccttcaccgacctactaacttctcacttaatcattacccgtggtatttctaactaagaatctaactagtcctaaatatgagaacccactc--ac 13269027  T
Q  488 ttcctcttaatcacaaaccagtgaccgtccttgaagtactat--caaat-atggagacattatcctagacaaagaatcaactcgtgcttacaagcttaga 584  Q
    ||||| ||| ||||| ||  |||||||| ||| || |  | |  ||||| ||||||||| | ||||||| ||||||||| |||||||||| |||||||||    
T  13269028 ttcctattagtcacagacgcgtgaccgttcttaaaatcttttagcaaatgatggagacactctcctagaaaaagaatca-ctcgtgcttaaaagcttaga 13269126  T
Q  585 gagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaa 684  Q
    |||||||||||| ||||||||| ||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||| |||| |||||||||| | |     
T  13269127 gagattcagagtattacaactcaattacaaagtcgaactcaaatatcaaagtgatataagagtggcttacaaataacaatgacagactaaaaccccagat 13269226  T
Q  685 gactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatc-gggctag 783  Q
    ||||||||||  ||||| |||||||||| | |||||||| || | || |  ||||||||||||   ||  |||| ||  |||||||| | ||  ||||      
T  13269227 gactcttttc--aattgcggcttcagtgatgaattaggtcttctctctttgtttatatagccttgatgcagaataggtgtgatgcacgagtcttggct-- 13269322  T
Q  784 aacaatcagctg-aattacgagatttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    || ||||||||| |||  ||| |||||| |||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  13269323 aaaaatcagctgaaatctcgaaatttcaacacaggtattctgaagcagatcggatgtttccttaaatgttgcaacaacattctt 13269406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 629 - 866
Target Start/End: Complemental strand, 17871349 - 17871113
Alignment:
Q  629 atcaaagtgatataagagtggctcacaaataacaaaga-catactaaaaccctaaaagactcttttctaaattgtggcttcagtgc-tcaattaggtatt 726  Q
    ||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||| | ||| ||||| ||||    ||||||||||  |||||||||| ||    
T  17871349 atcaacgtgatacaagagtgactcacaaataacaaagaacatactaaaaccctacatgacacttttgtaaacgacggcttcagtgagtcaattaggtctt 17871250  T
Q  727 ttgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcacaagtattctgaa 826  Q
      ||| |  ||||||||||||  |||   |||| |||||||||||||||| ||||| |||| ||| |||||| ||||||||||||||||  |||||||||    
T  17871249 gagtctta-tttatatagccttattgaaaaatgagcttgatgcacaaatctggcta-aaca-tcatctgaatcacgagatttcagcacatttattctgaa 17871153  T
Q  827 gcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    ||| ||| |||||||||||||||||| |||||||||||||    
T  17871152 gcagatctgatgtttccttaaatgttacaacaacattctt 17871113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 308 - 461
Target Start/End: Original strand, 13875971 - 13876119
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcac 407  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||| | ||       
T  13875971 acctagtttggtgcaacttaacctacatat-ggggctaccaagccaggaaggaaattcactatagtagtatcaattcaaagaatacataaaaccatt--- 13876066  T
Q  408 cagcctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 461  Q
      | |||||| ||||||||||||||||| |   || ||||||||||||| ||||    
T  13876067 -ggtctactagcttctcacttaatcactacttatgcaatttctacctaagactc 13876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 299 - 455
Target Start/End: Complemental strand, 17871674 - 17871522
Alignment:
Q  299 tatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaa 398  Q
    ||||| |||||| |||| |||||||||||||||||||||  ||||||||||| ||||||||||||||||||  ||| ||||||||| ||| |||||||||    
T  17871674 tatttcttgacccagttcggtgcaacttcacctacatctgagggctaccaagtcaggaaggaaattcacta-agtagtatcaattcaaagtatacataaa 17871576  T
Q  399 agctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttctaccta 455  Q
    |    ||  | | |||||| |||||||| |||||||| || ||| ||||||||||||    
T  17871575 a---atcctcggtctactagcttctcacctaatcactacctgtgcaatttctaccta 17871522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 788 - 866
Target Start/End: Original strand, 13959451 - 13959530
Alignment:
Q  788 atcagctgaattacgagatttcagcacaag-tattctgaagcatatcagatgtttccttaaatgttgcaacaacattctt 866  Q
    |||||| |||| |||||||||||||||||| |||||| | ||| ||  ||||||||||||||||||||||||||||||||    
T  13959451 atcagccgaatcacgagatttcagcacaagatattctaatgcaaattcgatgtttccttaaatgttgcaacaacattctt 13959530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 628 - 780
Target Start/End: Complemental strand, 11289195 - 11289043
Alignment:
Q  628 tatcaaagtgatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattt 727  Q
    |||||| |||||  ||||| |||||||||||||||| || | |||||||||||||||||| ||||| | ||||| ||| ||||   | ||||| || ||     
T  11289195 tatcaacgtgatgcaagagcggctcacaaataacaaggatagactaaaaccctaaaagacacttttgtgaattgcggcatcagatgtgaattaagtcttg 11289096  T
Q  728 tgtcatcctttatatagcctgcttgttgaatgggcttgatgcacaaatcgggc 780  Q
     ||| ||||||||||||||||  ||  ||||| |||||||||| || ||||||    
T  11289095 agtcttcctttatatagcctgaatgcagaatgtgcttgatgcataactcgggc 11289043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 312 - 461
Target Start/End: Complemental strand, 11289495 - 11289347
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| |||||||| ||||| || ||| |||| || |||||||||||| ||||||||||  | | ||| |||| |||||  |||||||| || |  | ||     
T  11289495 agttcggtgcaacgtcaccaacgtct-ggggttaacaagccaggaagaaaattcactagagcagtattaatttgaagctaacataaaaactatgtctagt 11289397  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 461  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  11289396 ctactagcttctcacttaatcactacccatgtaatttctatctaagactc 11289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 352 - 451
Target Start/End: Original strand, 15841673 - 15841772
Alignment:
Q  352 caggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaatttcta 451  Q
    |||||||||||||||||||  |||||| | || ||||||||||||||| || || | || |||||| |||| ||| |||||||| |||||  ||||||||    
T  15841673 caggaaggaaattcactataataatattagtttgaagcatacataaaaactatctctagtctactagcttcgcacctaatcactacccgttcaatttcta 15841772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 19564820 - 19564923
Alignment:
Q  296 ggttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacat 395  Q
    |||||||| || ||| ||||||||||||| ||| |||  ||||| || |||||||||| ||||||||| ||||||  || ||||| || ||||||| |||    
T  19564820 ggttatttgttaacccagtttggtgcaacgtcatctaagtctagaggttaccaagccaagaaggaaatccactataatagtatcagtttgaagcatgcat 19564919  T
Q  396 aaaa 399  Q
    ||||    
T  19564920 aaaa 19564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 807 - 892
Target Start/End: Complemental strand, 11864787 - 11864703
Alignment:
Q  807 ttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacacgttaaacataaaccgcc 892  Q
    |||||||||| |||||||||||| || | ||||||||||||||||| ||||| ||  ||| |||||||||  ||| ||||||||||    
T  11864787 ttcagcacaa-tattctgaagcaaataaaatgtttccttaaatgttacaacatcacacttaagaaacacgacaaagataaaccgcc 11864703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 11865287 - 11865214
Alignment:
Q  297 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||| || ||| |||| |||||||| ||  |||| ||| |||||||||||||||||||| |||||||||||    
T  11865287 gttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaagaaaattcactat 11865214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 13958997 - 13959072
Alignment:
Q  322 aacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    ||||||||||||  |||||| |||||||||||||||||||||||| ||  ||| |||||| || ||||||||||||||    
T  13958997 aacttcacctacgactaggg-ctaccaagccaggaaggaaattcatta-agtagtatcaaatcaaagcatacataaaa 13959072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 24143132 - 24143192
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||| |||||||| |||||||| ||| |||||||||||| |||||||||||| |||||    
T  24143132 acctagttcggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaatccacta 24143192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 25354793 - 25354737
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  25354793 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 25354737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 598
Target Start/End: Original strand, 9235089 - 9235141
Alignment:
Q  547 tcctagacaaagaatcaactcgtgcttacaagct-tagagagattcagagttt 598  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  9235089 tcctagacaaagaatcaactcttgcttacaagctattgagtgattcagagttt 9235141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 748
Target Start/End: Original strand, 15841945 - 15842056
Alignment:
Q  637 gatataagagtggctcacaaataacaaagacatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcct 736  Q
    |||| ||||| || ||||||||||||| |||  |||||||||||||||| | |||||  ||||   | ||||||| || |||||||| ||  ||| ||||    
T  15841945 gatacaagaggggatcacaaataacaaggactgactaaaaccctaaaaggcacttttgcaaatgacgacttcagtactgaattaggtcttgagtcttcct 15842044  T
Q  737 ttatatagcctg 748  Q
    ||||||||||||    
T  15842045 ttatatagcctg 15842056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 10721998 - 10722035
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10721998 tcacctacatctaggggttaccaatccaggaaggaaat 10722035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 10935767 - 10935804
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaat 363  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  10935767 tcacctacatctaggggttaccaatccaggaaggaaat 10935804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 19894965 - 19894905
Alignment:
Q  308 acctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||| |||||||| |||| ||| |||||| |||||||||||||||| ||||| |||||    
T  19894965 acctagttcggtgcaacgtcacatac-tctaggagctaccaagccaggaacgaaatccacta 19894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 21478109 - 21478165
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  21478109 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatacacta 21478165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 23541245 - 23541301
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| | ||||||||||||||||||||||| |||||    
T  23541245 agttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaatccacta 23541301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 24608692 - 24608765
Alignment:
Q  297 gttatttattgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactat 370  Q
    ||||||| || ||| |||| |||||||| |||||||| ||| ||| |||||||||  | |||||||||||||||    
T  24608692 gttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagcttgaaaggaaattcactat 24608765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 312 - 461
Target Start/End: Original strand, 24482319 - 24482468
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    ||||||||||||| |||||||||||| ||||||| |||| || |||||||||||||||| ||| |||||||||| ||||||||||||| ||||| ||||     
T  24482319 agtttggtgcaacgtcacctacatctgggggctaacaagtcaagaaggaaattcactatagtagtatcaattcgcagcatacataaaaactttctccagt 24482418  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactc 461  Q
    |||||| ||||||||||||||||| | |||| |||||||| |||| ||||    
T  24482419 ctactagcttctcacttaatcactactcgtgcaatttctatctaagactc 24482468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 312 - 462
Target Start/End: Original strand, 32179308 - 32179458
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaagctttcaccagc 411  Q
    |||| ||||||||||||||||| ||| | |||||| |||  |||||| ||||||||||| | | ||| |||| ||||||||||||||| || ||  |||     
T  32179308 agttcggtgcaacttcacctacgtctggaggctacaaagttaggaagaaaattcactatagcagtattaatttgaagcatacataaaaactatcttcagt 32179407  T
Q  412 ctactaacttctcacttaatcactgcccgtgtaatttctacctaaaactct 462  Q
    |||| | ||||||||||||||||  |||||| |||||||| |||| |||||    
T  32179408 ctaccagcttctcacttaatcaccacccgtgcaatttctatctaagactct 32179458  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 347 - 455
Target Start/End: Original strand, 14162659 - 14162764
Alignment:
Q  347 caagccaggaaggaaattcactatggtaatatcaattcgaagcatacata-aaagctttcaccagcctactaacttctcacttaatcactgcccgtgtaa 445  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||| | ||    || |||||| ||||||||||||||||| || ||||||    
T  14162659 caagccaggaaggaaattcactatagtagtatcaattcaaagcatacatagaaaccctt----agtctactatcttctcacttaatcactaccggtgtaa 14162754  T
Q  446 tttctaccta 455  Q
    ||||||||||    
T  14162755 tttctaccta 14162764  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 805 - 875
Target Start/End: Complemental strand, 28848110 - 28848040
Alignment:
Q  805 atttcagcacaagtattctgaagcatatcagatgtttccttaaatgttgcaacaacattcttcagaaacac 875  Q
    |||||||||||| |||||| ||  | || |||||||| ||||||||||| |||||||||||| ||||||||    
T  28848110 atttcagcacaaatattcttaaatagataagatgttttcttaaatgttgtaacaacattcttaagaaacac 28848040  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 23864623 - 23864568
Alignment:
Q  314 tttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||| |||| |||||    
T  23864623 tttggtgcaacatcacctacatctgggggataccaagtcaggaagaaaatccacta 23864568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 369
Target Start/End: Complemental strand, 37155669 - 37155627
Alignment:
Q  326 tcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||| ||| |||||||||||||||||||||||||||||||    
T  37155669 tcacctac-tctgggggctaccaagccaggaaggaaattcacta 37155627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 8726853 - 8726902
Alignment:
Q  319 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  8726853 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 8726902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 369
Target Start/End: Complemental strand, 12814723 - 12814693
Alignment:
Q  339 ggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||||||||||||||||||||||    
T  12814723 ggggctaccaagccaggaaggaaattcacta 12814693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 369
Target Start/End: Original strand, 24091981 - 24092015
Alignment:
Q  335 tctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||||||||||||||||||||||||| |||||    
T  24091981 tctaggggctaccaagccaggaaggaaatccacta 24092015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 39080974 - 39081023
Alignment:
Q  319 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||| |||||    
T  39080974 tgcaacgtcacctac-tctgggggctaccaagccaggaaggaaatccacta 39081023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 16196203 - 16196138
Alignment:
Q  319 tgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 384  Q
    |||||| | |||||||||| ||||| |||||| || ||| ||||||||||||| || |||||||||    
T  16196203 tgcaacctaacctacatctgggggccaccaaggcatgaatgaaattcactatgatagtatcaattc 16196138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 655
Target Start/End: Complemental strand, 16208460 - 16208357
Alignment:
Q  550 tagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagt 647  Q
    |||| ||||||||||||| |||||||||||||  || ||||||||  |||||||||| |||||  ||||||||||| ||  ||||| |||||| |||||     
T  16208460 tagaaaaagaatcaactcatgcttacaagctttaagtgattcaga-atttacaactcaattac--agtccaactct-atgcatcaacgtgatacaagagc 16208365  T
Q  648 ggctcaca 655  Q
    ||||||||    
T  16208364 ggctcaca 16208357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 17279890 - 17279946
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| |||| |||||||||||||||||||| |||||    
T  17279890 agttcggtgcaacgtcacctac-tctgggggataccaagccaggaaggaaatccacta 17279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 33466317 - 33466261
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  33466317 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 33466261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 553 - 780
Target Start/End: Original strand, 7231 - 7459
Alignment:
Q  553 acaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaactcgattacaaagtccaactctgatatcaaagtgatataagagtggctc 652  Q
    ||||||||||||||||||| |||||  || ||| |||||||||||||||||||| | || | ||| ||||||  ||||||||| ||||  || |||||||    
T  7231 acaaagaatcaactcgtgcctacaaattttgagtgattcagagttttacaactcaactatatagttcaactcaaatatcaaagcgatacgagggtggctc 7330  T
Q  653 acaaataacaaagaca-tactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgctt 751  Q
    |||||| |||||||||   | |||||| |||  ||| ||||  ||||||| ||||||| |  | |||||||| ||   || |||||||||||||||  ||    
T  7331 acaaattacaaagacaggccaaaaaccttaattgaccctttagtaaattgcggcttcaatagtaaattaggtcttgaatcttcctttatatagcctaatt 7430  T
Q  752 gttgaatgggcttgatgcacaaatcgggc 780  Q
    |   |||||||||||||||||||||||||    
T  7431 gcataatgggcttgatgcacaaatcgggc 7459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 559 - 856
Target Start/End: Complemental strand, 20639 - 20341
Alignment:
Q  559 aatcaactcgtgcttacaagcttagagagattcaga-gttttacaactcgattacaaagtccaactctgat--atcaaagtgatataagagtggctcaca 655  Q
    ||||||||||||||||||||||| ||| ||||  || |  ||||||||| | ||||||||||| |||  ||  ||||| |||||| ||||||||||||||    
T  20639 aatcaactcgtgcttacaagctttgagtgatttcgaagaattacaactcaactacaaagtccagctca-atgcatcaacgtgatacaagagtggctcaca 20541  T
Q  656 aataacaaag-acatactaaaaccctaaaagactcttttctaaattgtggcttcagtgctcaattaggtattttgtcatcctttatatagcctgcttgtt 754  Q
    |||||||||| ||  |||||||||||||  |||| |||| |||||  ||| |||| || |||||||||| ||  ||| |||||||||| || || |||      
T  20540 aataacaaagaaccgactaaaaccctaagtgactattttgtaaatgatgggttcaatgatcaattaggtcttgagtcttcctttatattgcttgattgca 20441  T
Q  755 gaatgggcttgatgcacaaatcgggctagaacaatcagctgaattacgagatttcagcac-aagtattctgaagcatatcagatgtttccttaaatgttg 853  Q
     ||||| ||||||||| |||   ||||  ||  ||| | ||||| ||||||||||||||| || |||||||||| | ||| |||||||||||||||||||    
T  20440 taatggacttgatgcataaaatcggct--aatcatc-gttgaatcacgagatttcagcacaaaatattctgaagtagatccgatgtttccttaaatgttg 20344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 399
Target Start/End: Complemental strand, 20896 - 20803
Alignment:
Q  305 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattcgaagcatacataaaa 399  Q
    ||||||||||| ||||||||||||||||  | | || | ||||||| |||||||||||||||| |  ||| ||||||||| ||||| ||||||||    
T  20896 ttgacctagttcggtgcaacttcacctatgtgtgggagttaccaagtcaggaaggaaattcacca-agtagtatcaattcaaagcaaacataaaa 20803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 9966 - 10045
Alignment:
Q  305 ttgacctagtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcactatggtaatatcaattc 384  Q
    |||||| |||| |||||||| | |||||||||| |||||||| |||||||||||||||||||||||  || |||||||||    
T  9966 ttgacccagttcggtgcaacctaacctacatctgggggctacaaagccaggaaggaaattcactataatagtatcaattc 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 603
Target Start/End: Original strand, 10222 - 10290
Alignment:
Q  535 atggagacattatcctagacaaagaatcaactcgtgcttacaagcttagagagattcagagttttacaa 603  Q
    ||||||||| | ||||||| ||| ||||||||| ||||||||||||| ||| |||| ||||||||||||    
T  10222 atggagacactctcctagaaaaaaaatcaactcttgcttacaagctttgagtgatttagagttttacaa 10290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 103113 - 103163
Alignment:
Q  318 gtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  103113 gtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaatccacta 103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 335 - 369
Target Start/End: Complemental strand, 7675 - 7641
Alignment:
Q  335 tctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||||||||||||||||||||||||||||||||||    
T  7675 tctaggggctaccaagccaggaaggaaattcacta 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 598
Target Start/End: Original strand, 40954 - 41006
Alignment:
Q  547 tcctagacaaagaatcaactcgtgcttacaagct-tagagagattcagagttt 598  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  40954 tcctagacaaagaatcaactcttgcttacaagctattgagtgattcagagttt 41006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 36299 - 36355
Alignment:
Q  312 agtttggtgcaacttcacctacatctaggggctaccaagccaggaaggaaattcacta 369  Q
    |||| |||||||| |||||||| ||| |||||||||||||||||||| |||| |||||    
T  36299 agttcggtgcaacgtcacctac-tctgggggctaccaagccaggaagaaaatccacta 36355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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