View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5652-Insertion-5 (Length: 795)

Name: NF5652-Insertion-5
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5652-Insertion-5
NF5652-Insertion-5
[»] chr5 (2 HSPs)
chr5 (668-760)||(35403053-35403145)
chr5 (672-760)||(32380455-32380543)
[»] chr7 (3 HSPs)
chr7 (668-760)||(21439719-21439811)
chr7 (683-760)||(12171116-12171192)
chr7 (697-760)||(33999629-33999692)
[»] chr4 (3 HSPs)
chr4 (668-760)||(13215974-13216066)
chr4 (696-741)||(22592678-22592723)
chr4 (668-741)||(9470019-9470093)
[»] chr8 (2 HSPs)
chr8 (668-760)||(11708789-11708879)
chr8 (684-760)||(12633561-12633637)
[»] chr6 (1 HSPs)
chr6 (668-760)||(32525011-32525103)
[»] chr2 (1 HSPs)
chr2 (693-760)||(11257056-11257123)
[»] chr3 (1 HSPs)
chr3 (692-741)||(50497383-50497432)
[»] chr1 (2 HSPs)
chr1 (706-760)||(26755334-26755389)
chr1 (696-741)||(29361532-29361577)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 668 - 760
Target Start/End: Original strand, 35403053 - 35403145
Alignment:
Q  668 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  35403053 ggcactggttaagggtcaaatatagtagtattttgtattgaaagttgtgttgtcattacattaaaagtttaaaaagtgttctttttgacttaa 35403145  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 672 - 760
Target Start/End: Original strand, 32380455 - 32380543
Alignment:
Q  672 ctggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    |||||||| ||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  32380455 ctggttaagggtcaaatatagtagtattttgtattgaaaattatgttgtcattacattaaaagctaaaaaagtgttctttttgacttaa 32380543  T

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Target: chr7 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 668 - 760
Target Start/End: Complemental strand, 21439811 - 21439719
Alignment:
Q  668 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| | |||| ||||||||||||||||||    
T  21439811 ggcactggttaagagtcaaatatagtagtattttgtattgaaagttgtgctgtcattgcattaaaagtttaaaaagtgttctttttgacttaa 21439719  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 683 - 760
Target Start/End: Original strand, 12171116 - 12171192
Alignment:
Q  683 tcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    ||||| |||||||| |||| |||| |||||||||||||||||||| |||||| | |||| ||||||||||||||||||    
T  12171116 tcaaatatagtagtgttttatattaaaagttgtgttgtcattaca-taaaagtttaaaaagtgttctttttgacttaa 12171192  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 697 - 760
Target Start/End: Complemental strand, 33999692 - 33999629
Alignment:
Q  697 attttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    |||||||||||||||||||| ||||||| | ||||||||| ||||  |||||||| ||||||||    
T  33999692 attttgtattgaaagttgtgctgtcattgcgttaaaagcttaaaaaatgttctttgtgacttaa 33999629  T

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Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 668 - 760
Target Start/End: Complemental strand, 13216066 - 13215974
Alignment:
Q  668 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    ||||||||||||  |||||| |||||||||||||||||||||||||||| |||||||  |||||||||| |||| || |||||||||||||||    
T  13216066 ggcactggttaagagtcaaatatagtagtattttgtattgaaagttgtgctgtcattgtattaaaagcttaaaaagtattctttttgacttaa 13215974  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 696 - 741
Target Start/End: Complemental strand, 22592723 - 22592678
Alignment:
Q  696 tattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 741  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||    
T  22592723 tattttgtatcgaaagttgtgttgtcattgcattaaaagcttaaaa 22592678  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 668 - 741
Target Start/End: Original strand, 9470019 - 9470093
Alignment:
Q  668 ggcactggttaa-aggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 741  Q
    |||||||||||| | | |||| ||| || ||||||||||||||||||||| | ||||| ||||||||||| ||||    
T  9470019 ggcactggttaagaagacaaatataatattattttgtattgaaagttgtgctctcattgcattaaaagcttaaaa 9470093  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 668 - 760
Target Start/End: Original strand, 11708789 - 11708879
Alignment:
Q  668 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    ||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| ||||  ||||||||||||    
T  11708789 ggcactggttaagagtcaaatatagtagtactttgtattgaaagttgtgttgtcattgcattaaaggcttaaaaagtgt--tttttgacttaa 11708879  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 760
Target Start/End: Complemental strand, 12633637 - 12633561
Alignment:
Q  684 caaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    |||| |||||| ||||||||||||||||||||| ||||||  ||||||||| | |||| |||| | |||| ||||||    
T  12633637 caaatatagtattattttgtattgaaagttgtgctgtcatagcattaaaagtttaaaaagtgtcccttttaacttaa 12633561  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 668 - 760
Target Start/End: Original strand, 32525011 - 32525103
Alignment:
Q  668 ggcactggttaaaggtcaaacatagtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||  | ||||  |||||||||| ||||||    
T  32525011 ggcactgactaagggtcaaatatagtagtattttgtattgaaagttgtgctgtcattgcattaaaaatttaaaaattgttctttttaacttaa 32525103  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 693 - 760
Target Start/End: Original strand, 11257056 - 11257123
Alignment:
Q  693 tagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaaggtgttctttttgacttaa 760  Q
    ||||||||||||||||||||| || ||||||| ||||||||||| |||| |||||  |||||||||||    
T  11257056 tagtattttgtattgaaagttatgatgtcattgcattaaaagcttaaaaagtgttacttttgacttaa 11257123  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 741
Target Start/End: Complemental strand, 50497432 - 50497383
Alignment:
Q  692 gtagtattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 741  Q
    ||||||||||| |||||||||||||| | |||||||||||||||| ||||    
T  50497432 gtagtattttgcattgaaagttgtgtagccattacattaaaagcttaaaa 50497383  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 760
Target Start/End: Original strand, 26755334 - 26755389
Alignment:
Q  706 tgaaagttgtgttgtcattacattaaaagc-taaaaaggtgttctttttgacttaa 760  Q
    ||||||||||||||| ||| |||||||||| |||||| ||||||||||| ||||||    
T  26755334 tgaaagttgtgttgttattgcattaaaagcttaaaaaagtgttcttttttacttaa 26755389  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 741
Target Start/End: Original strand, 29361532 - 29361577
Alignment:
Q  696 tattttgtattgaaagttgtgttgtcattacattaaaagctaaaaa 741  Q
    ||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  29361532 tattttgtattgaaagttgtgctgttattgcattaaaagcttaaaa 29361577  T

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