View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652-Insertion-6 (Length: 755)
Name: NF5652-Insertion-6
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 669; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 669; E-Value: 0
Query Start/End: Original strand, 8 - 755
Target Start/End: Original strand, 42678450 - 42679192
Alignment:
| Q |
8 |
ctaacgagcaatacagttacttgaaagccaacgttgatgctctaaacatcattcagatcggtcttaccttatcggatgcaattggtaacctccctagtga |
107 |
Q |
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| T |
42678450 |
ctaacgagcaatacagttacttgaaagccaacgttgatgctctaaacattattcagatcggtcttaccttatcggatgcaattggtaacctccctagtga |
42678549 |
T |
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| Q |
108 |
tgagaacaatcgttacatctgggaattcaatttccgtgattttaacgtcaagagggacctccacaataaagattccattgacatgctccgccgtcagggt |
207 |
Q |
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| T |
42678550 |
tcagaacaatcgttacatctgggaattcaatttccgtgactttaacgtcaagagggatctccacaacaaagactccattgacatgctccaccgtcagggt |
42678649 |
T |
|
| Q |
208 |
atcgacttctttcgtaacactgttcaaggtgtggactcgtttcattttgcgatgctgatgcggtggtctggactgcttttcaacaactcggtgacatggg |
307 |
Q |
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| T |
42678650 |
atcaacttctttcgtaacactgttcaaggtgtggactcgtttcattttgcgatgctgatgcggtggtctggactgcttttcaacaactcggtgacatggg |
42678749 |
T |
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| Q |
308 |
tgacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcattatcttcctcgtagcttgaaagagtttttgcatgttttgagaga |
407 |
Q |
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| T |
42678750 |
tgacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcattatcttcctcgtagcttgaaagagtttttgcatgttttgagaga |
42678849 |
T |
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| Q |
408 |
attatttggaaggaatgtgtatgatatcaagtatatgattcgctattcaaatgcactttatggcggtcttgaacaagttgcgagtattcttcatgtggat |
507 |
Q |
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| T |
42678850 |
attatttggaaggaatgtgtatgatatcaagtatatgattcgctattcaaatgcactttatggcggtcttgaacaagttgcgagtattcttcatgtggat |
42678949 |
T |
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| Q |
508 |
cgggccattggtaagtgccatcaaagctggatcagacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaagtc |
607 |
Q |
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| T |
42678950 |
cgggccattggtaagtgccatc-aagctggatccgacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaagtc |
42679048 |
T |
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| Q |
608 |
aaaaagcacgctggagtcatatttggattagaagttacagcttgataaagaaaccttgacttggagtttgaaattggctacataatacatgataaacatt |
707 |
Q |
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| T |
42679049 |
aaaaagcacgctggagtcatatttggattagaagttacagcttgataaagaaaccttga-tttgagtttgaa--ttgctacataatacatgataaacatt |
42679145 |
T |
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| Q |
708 |
tagtatatgtttttaattgtttctgacaatataatatcaacatgctta |
755 |
Q |
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| T |
42679146 |
tagtatatg-ttttaattgtttctgacaatataatatcaacatgctta |
42679192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 7e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 11 - 658
Target Start/End: Complemental strand, 54704295 - 54703648
Alignment:
| Q |
11 |
acgagcaatacagttacttgaaagccaacgttgatgctctaaacatcattcagatcggtcttaccttatcggatgcaattggtaacctccctagtgatga |
110 |
Q |
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| T |
54704295 |
acgaacaatacagttatttgaaatcaaatgttgatgctcttaaaatcattcagatcggtctcactttaaccgatgccaaaggtaacattcctcgttttaa |
54704196 |
T |
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| Q |
111 |
gaacaatcgttacatctgggaattcaatttccgtgattttaacgtcaagagggacctccacaataaagattccattgacatgctccgccgtcagggtatc |
210 |
Q |
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| T |
54704195 |
aaacatttgttgcatatgggaattcaacttttgtgactttaagatcgggcgcgacattcacaaccaagattccattgacatgctccgccgtcaaggtatt |
54704096 |
T |
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| Q |
211 |
gacttctttcgtaa-cactgttcaaggtgtggactcgtttcatttt-gcgatgctgatgcggtggtctggactgcttttcaacaactcggtgacatgggt |
308 |
Q |
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| T |
54704095 |
gacttcacctgtaaacgcctctcatggtgtgaattcattccatttttgtcat-ctgatgtggggatctggactactcttcaacaaagatgttacatgggt |
54703997 |
T |
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| Q |
309 |
gacattccacagtgcgtatgattttggatatctggtgaaaatcttaacgcggcattatcttcctcgtagcttgaaagagtttttgcatgttttgagagaa |
408 |
Q |
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| T |
54703996 |
cacatttcacagtgcatttgattttggatatctggtaaaaatactaacacagagttatctcccgaatagcttggaagactttttgaaatttttgagagaa |
54703897 |
T |
|
| Q |
409 |
ttatttggaaggaatgtgtatgatatcaagtatatgattcgctattcaaatgcactttatggcggtcttgaacaagttgcgagtattcttcatgtggatc |
508 |
Q |
| |
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||||||||||| || ||||||||||| |||||||| || ||||| | | |||||| |||| |||||||||| ||||| | |||||| | ||||||| |
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| T |
54703896 |
ttatttggaagtaaagtgtatgatatgaagtatatcatccgctactgtagtgcactacatggtggtcttgaacgggttgctaatattctcgacgtggatc |
54703797 |
T |
|
| Q |
509 |
gggccattggtaagtgccatcaaagctggatcagacagtttgttgacatcgcagacttttcacaagatggtgaacacatattttatcaacaatgaagtca |
608 |
Q |
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| T |
54703796 |
gggccattggaaagtcacatc-aagctggatctgatagtttattaacatggcagacttttcagaaaatagtgcacacacatttcaccaacaatgaagtcc |
54703698 |
T |
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| Q |
609 |
aaaagcacgctggagtcatatttggattagaagttacagcttgataaaga |
658 |
Q |
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| T |
54703697 |
aaaaatatgctggaataattttcggattagaagttaaagcttgttaaaga |
54703648 |
T |
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