View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652-Insertion-7 (Length: 645)
Name: NF5652-Insertion-7
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652-Insertion-7 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 233 - 645
Target Start/End: Original strand, 29541084 - 29541496
Alignment:
| Q |
233 |
aatgtaatttgatgtgttctcataaactattttcattaaaaatagtaataaatacccttcctctctnnnnnnnttaaagaaacaaataataaatattgga |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| |
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| T |
29541084 |
aatgtaatttgatgtgttctcataaactattttcattaaaaatagtaataaattcacttcctctctaaaaaaattaaagaaacagataataaatattgga |
29541183 |
T |
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| Q |
333 |
tggaccacaccaaaacctaaaatagagattgatgaaagcatagtttagcaagattgaatattcgagtcagttcacaagtcctaactcgactgataaaaat |
432 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
29541184 |
tggaccacaccaaaatctaaaatagagattgatgaaagcatagtttagcaagattgaatatacgagtcagttcacaagtcctaactcaactgataaaaat |
29541283 |
T |
|
| Q |
433 |
atcaaaactggtaaatcagacgccatgatcaacgttcgaaccccatccctccactggtgtgtgtgggttccaatattatttgtcttttcgtctatctaca |
532 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29541284 |
atcaaaactggtaaatcgaacgccatgatcaacgttcgaatcccgaccctccacttgtgtgtgtgggttccaatattgtttgtcttttcgtctatctaca |
29541383 |
T |
|
| Q |
533 |
taaagaaaatatacgagtcnnnnnnnntaaaatttgaagactcttattatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctgg |
632 |
Q |
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| T |
29541384 |
gaaagaaaatatacgagtaaaataaaataaaatttgaagactcttattatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctgg |
29541483 |
T |
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| Q |
633 |
tagggatcagaag |
645 |
Q |
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| T |
29541484 |
tagggatcagaag |
29541496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 29540836 - 29541067
Alignment:
| Q |
8 |
aaacgtacataagagtcaaaaatcgaccttactactcatcgtaaaatgttagatttgatcatgtaaaaaatactcatgatgtacaaacttttgcatcaga |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
29540836 |
aaacgtacataagagtcaaagatcgaccttactacttatcgtaaaatgttagatttgatcatgtaaaaaatactgatgatgtacaaacttttgcatctga |
29540935 |
T |
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| Q |
108 |
atttacaaaaatgtttacaccaatgtaatttgatattaagtaggtccatattagacccattcaataaatttttaatcctaacgacgagttttgtaaaata |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29540936 |
acttacaaaaatgtttacaccaatgtaatttgatattaagtaggtccatattagacccattcaataaatttttaatccaaacgacgagttttgtaaaata |
29541035 |
T |
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| Q |
208 |
tgtaggcaaaaataagttattggacaatgtaa |
239 |
Q |
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| T |
29541036 |
tgtaggcaaaaataagttattggacagtgtaa |
29541067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 645
Target Start/End: Original strand, 29511018 - 29511082
Alignment:
| Q |
581 |
atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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| T |
29511018 |
atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaag |
29511082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 645
Target Start/End: Original strand, 29518136 - 29518200
Alignment:
| Q |
581 |
atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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| T |
29518136 |
atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaag |
29518200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 29507196 - 29507262
Alignment:
| Q |
579 |
ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| || |||||||||| |
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| T |
29507196 |
ttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaag |
29507262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 579 - 645
Target Start/End: Original strand, 29535270 - 29535336
Alignment:
| Q |
579 |
ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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||||||||||||||||||||||| |||||||| || |||||||||| |||||| || |||||||||| |
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| T |
29535270 |
ttatataccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaag |
29535336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 584 - 645
Target Start/End: Original strand, 29549036 - 29549097
Alignment:
| Q |
584 |
taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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|||||||||||||| ||| |||||||||||| |||||||| |||||| || |||||||||| |
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| T |
29549036 |
taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaag |
29549097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 645
Target Start/End: Complemental strand, 29490618 - 29490557
Alignment:
| Q |
584 |
taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaag |
645 |
Q |
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|||||| ||||||| ||| ||| |||||||||||||||| ||||||| || |||||||||| |
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| T |
29490618 |
tacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaag |
29490557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 631
Target Start/End: Original strand, 51266291 - 51266337
Alignment:
| Q |
585 |
accttcttatcaacatagtcagcccaaaatctagcttgtgctctctg |
631 |
Q |
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||||| ||||||||| | |||||||||||||||||||| |||||||| |
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| T |
51266291 |
accttattatcaacaaaatcagcccaaaatctagcttgagctctctg |
51266337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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