View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652_high_4 (Length: 404)
Name: NF5652_high_4
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652_high_4 |
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| [»] scaffold0007 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 4720878 - 4720999
Alignment:
| Q |
261 |
aaaaaagaatacgtgaaaatgatcaagacttgcccctatcaacagcagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
360 |
Q |
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| T |
4720878 |
aaaaaataatacgtgaaaatgatcaagacttgcccctatcaacaacagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac |
4720977 |
T |
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| Q |
361 |
cggcataaggccaagtgtgaat |
382 |
Q |
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| T |
4720978 |
cggcataaggccaagtgtgaat |
4720999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4720211 - 4720306
Alignment:
| Q |
1 |
acaaatgattaatactacttgtatttttgtggaaatgattgagttgattttcgtccaaaatcgatttgaaagaattgggagaatcggagaagtttt |
96 |
Q |
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| T |
4720211 |
acaaatgattaatactacttgtatttttttgaaaatgattgagttgattttcgtccaatatcgatttgaaggaattgggagaatcggagaagtttt |
4720306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 4720377 - 4720484
Alignment:
| Q |
160 |
tttgatggttaactactgaggga-tatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttccaattgttatttggtcc |
258 |
Q |
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| T |
4720377 |
tttggtggttaactaccgagggggtatttatgtattttactggtgtttttcaacctttatgttaagtgtcaacaacaattttccaattgttatttggtcc |
4720476 |
T |
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| Q |
259 |
ataaaaaa |
266 |
Q |
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| T |
4720477 |
ataaaaaa |
4720484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 251319 - 251395
Alignment:
| Q |
1 |
acaaatgattaatactacttgtatttttgtggaaatgattgagttgattttcgtccaaaatcgatttgaaagaattgg |
78 |
Q |
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| T |
251319 |
acaaatgattaatactacttgtgtttttgtagagataat-gagttgattttcgttcaaaatcgatttgaaggaattgg |
251395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 251417 - 251462
Alignment:
| Q |
110 |
aaactgatatgaaaatgatgcttctatttttgtataaaggacgcat |
155 |
Q |
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| T |
251417 |
aaactgatatgaaactgatgcttatgtttatgtataaaggacgcat |
251462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 22494873 - 22494812
Alignment:
| Q |
181 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttcca |
243 |
Q |
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| T |
22494873 |
gatatttacgtattttactggtgtttttcagcc-ttctgttaagtgtcaacaacaattttcca |
22494812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 9428940 - 9428881
Alignment:
| Q |
181 |
gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttc |
241 |
Q |
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| T |
9428940 |
gatatttgcgtattttattggtgtttttcaacc-ttatgtgaagtgtcaacaacaattttc |
9428881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35464443 - 35464493
Alignment:
| Q |
1 |
acaaatgattaatactacttgtatttttgtggaaatgattgagttgatttt |
51 |
Q |
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| T |
35464443 |
acaaatgattaatactacttgtggttttgtggagatgattgacttgatttt |
35464493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 22530084 - 22530126
Alignment:
| Q |
4 |
aatgattaatactacttgtatttttgtggaaatgattgagttg |
46 |
Q |
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| T |
22530084 |
aatgattaatactacttgtgtttttgtggagatggttgagttg |
22530126 |
T |
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