View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652_low_1 (Length: 611)
Name: NF5652_low_1
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 7037728 - 7037147
Alignment:
| Q |
11 |
cagagacacagttggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagt |
110 |
Q |
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| T |
7037728 |
cagagacacagttggctttcatattcggtagaatatttttggataggatccttatagctaaagaaattatggatgaggcaaaaaggtagaaaaaagaagt |
7037629 |
T |
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| Q |
111 |
gctcatgtttaaagtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaa |
210 |
Q |
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| T |
7037628 |
gctcatgtttaaagtagacttcgaaaaggcgtatgacttagttgattgaaatttcctgactttgtcatgttgaaatggggtttcatgaaacatgaaggaa |
7037529 |
T |
|
| Q |
211 |
atggatcttaaaatgcttgaagacaacgtcaatttccatattggcgaatggaagccccactaaggaatttgaaatgggtcttcgattgagacaaggtgat |
310 |
Q |
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| T |
7037528 |
atggatcttaaaatgcttgaagacaacgtcaatttccatattggcgaatggaagccccattaaggaatttgaaacgggtcttcgattgagacaaggtgat |
7037429 |
T |
|
| Q |
311 |
cctttgttgccgtttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatg |
410 |
Q |
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| T |
7037428 |
cctttgttgccgtttttgtttctcatagttgctgaaggatttcatatgttgatgaggagatctgtggagttgagtttgttcacaagtttcaaatttgatg |
7037329 |
T |
|
| Q |
411 |
atgaaggctatgctcgcctacaatacacagattatatgttaatcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttca |
510 |
Q |
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| T |
7037328 |
atgaaggctatgctcgcctacaatacacagattatatgttaatcattggaggaaagggatgggggaatattcgaattataaaggaaaaataggatcttca |
7037229 |
T |
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| Q |
511 |
ccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaattggaagaataatcagtt |
592 |
Q |
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| T |
7037228 |
ccttttaagtatcttaggctacctggcaaccagttatagatgcggtttgtttaatattgtcaaattggaagaataatcagtt |
7037147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 36421241 - 36421201
Alignment:
| Q |
116 |
tgtttaaagtagacttcgaaaaggcgtatgacttagttgat |
156 |
Q |
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| T |
36421241 |
tgtttaaagttgacttcgaaaaggcgtatgattcagttgat |
36421201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 54163994 - 54164030
Alignment:
| Q |
116 |
tgtttaaagtagacttcgaaaaggcgtatgacttagt |
152 |
Q |
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| T |
54163994 |
tgtttaaagttgacttcgaaaaggcgtatgatttagt |
54164030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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