View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652_low_12 (Length: 208)
Name: NF5652_low_12
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 26713605 - 26713690
Alignment:
| Q |
20 |
cagccagcggcggcgagggttcccccacacgggtttataggtattgctctttcttaaaattttcacacttattattgcggtagtta |
105 |
Q |
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| T |
26713605 |
cagccagcggcggcgagggttcccccacacgggtttataggtcttgctctgtcttaaaattttcacacttattattgcggtagtta |
26713690 |
T |
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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 26983344 - 26983429
Alignment:
| Q |
20 |
cagccagcggcggcgagggttcccccacacgggtttataggtattgctctttcttaaaattttcacacttattattgcggtagtta |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26983344 |
cagccagcggcggcgagggttcccccacacgggtttataggtcttgctctgtcttaaaattttcacacttattattgcggtagtta |
26983429 |
T |
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