View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5652_low_3 (Length: 494)
Name: NF5652_low_3
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 485
Target Start/End: Original strand, 23929445 - 23929911
Alignment:
| Q |
19 |
tcaaatcctattcttagatatataagtgatattcttatggatgaagaagatttggagacaaagccttgtatgttgcaagattgtttcaagcttcaagctg |
118 |
Q |
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| T |
23929445 |
tcaaatcctattcttagatatataagtgatattcttatggatgaagaagatttggagacaaagccttgtatgttgcaagattgtttgaagcttcaagctg |
23929544 |
T |
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| Q |
119 |
ctgaaaaatcgttttatgatgttttaggatcagtaactggaactagttctagttctgagagctatagtaattgtagttataatactgataattctgttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929545 |
ctgaaaaatcgttttatgatgttttaggatcagtaactggaactagttctagttctgagagctatagtaattgtagttataatactgataattctgttgt |
23929644 |
T |
|
| Q |
219 |
tgattgcgattcgccggaaaataatgcatatgaggtgtttgataaaattccttatgatccacgaggttttttcggttctccgagtgatgtttggcagatg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
23929645 |
tgattgcgattcgccggaaaataatgcatatgaggtgtttgataaaattccttatgatccgcgaggttttttcggttctccgagtgatgtttggaagatg |
23929744 |
T |
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| Q |
319 |
aatgaagagggtagttttgttttgggttctagaggtttaggggaaaagagaggttatttgatgaattgtaatgatattggtatttcacatgaagaagatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929745 |
aatgaagagggtagttttgttttgggttctagaggtttaggggaaaagagaggttatttgatgaattgtaatgatattggtatttcacatgaagaagatc |
23929844 |
T |
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| Q |
419 |
tgagaagtaacaaggtttcagctgtatattatgatgatacagagttatcagagatgtttgatgatgt |
485 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23929845 |
tgagaagaaacaaggtttcagctgtttattatgatgatacagagttatcagagatgtttgatgatgt |
23929911 |
T |
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