View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5652_low_9 (Length: 244)
Name: NF5652_low_9
Description: NF5652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5652_low_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 32189247 - 32189486
Alignment:
| Q |
5 |
gaacgagcagaacctgtgctaccttagcccttcacaatcacattcctccaaatcaccaaacataaaatcacctctccaacaatttttcgtgtagacaaat |
104 |
Q |
| |
|
|||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
32189247 |
gaactagcacaacctatgcaaccttagcccttcacaatcacattcctccaaatcaccaaacataaaatcacctctccaataatttttcgtatagacaaat |
32189346 |
T |
|
| Q |
105 |
attagtacgttagttgttatctgaatcaaaagtctcccaccaaagtcgacgtagtactaatcgattccaattcttacatcaaatttcttgnnnnnnnnct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32189347 |
attagtacgttagttgttatctgaatcaaaagtctcccaccaaagtcgacgtagtactaatcgattccaattcttacatcaaatttcttgttttttttct |
32189446 |
T |
|
| Q |
205 |
ttgaattaatttttatcatcatcatgagcatctcattgtc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32189447 |
ttgaattaatttttatcatcatcatgagcatctcattgtc |
32189486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University