View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5653-Insertion-3 (Length: 512)

Name: NF5653-Insertion-3
Description: NF5653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5653-Insertion-3
NF5653-Insertion-3
[»] chr4 (3 HSPs)
chr4 (35-411)||(54222100-54222485)
chr4 (411-507)||(54221894-54221988)
chr4 (411-454)||(961416-961459)
[»] chr1 (3 HSPs)
chr1 (42-122)||(34752081-34752161)
chr1 (411-452)||(2279213-2279254)
chr1 (379-411)||(19330921-19330953)
[»] chr7 (5 HSPs)
chr7 (411-455)||(22588848-22588892)
chr7 (411-450)||(16829576-16829615)
chr7 (411-450)||(16954036-16954075)
chr7 (411-447)||(42663310-42663346)
chr7 (411-447)||(45256626-45256662)
[»] chr2 (4 HSPs)
chr2 (411-455)||(40874148-40874192)
chr2 (52-102)||(6265897-6265947)
chr2 (381-414)||(9979094-9979127)
chr2 (381-414)||(32749996-32750029)
[»] chr5 (3 HSPs)
chr5 (411-450)||(844173-844212)
chr5 (411-447)||(6968607-6968643)
chr5 (411-450)||(43057575-43057614)
[»] chr8 (4 HSPs)
chr8 (411-453)||(30170621-30170663)
chr8 (411-449)||(37379331-37379369)
chr8 (382-414)||(40102022-40102054)
chr8 (381-413)||(42716318-42716350)
[»] chr6 (1 HSPs)
chr6 (377-409)||(30796120-30796152)
[»] chr3 (1 HSPs)
chr3 (377-409)||(22813066-22813098)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 35 - 411
Target Start/End: Complemental strand, 54222485 - 54222100
Alignment:
Q  35 gtgtagaggagaagatggaagagatagagctagaattgtgtatgcaaatgtattcatgttctcattttaattatcaacaaatctaaactgtttggttaac 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54222485 gtgtagaggagaagatggaagagatagagctagaattgtgtatgcaaatgtattcatgttctccttttaattatcaacaaatctaaactgtttggttaac 54222386  T
Q  135 tccaacaataatttttagatggtccaccggcgagggatttaattgaacctacatcataaaatta-------gatatagtgcataagaaattagatattta 227  Q
    || || ||||||||||||||||||||| || ||| |||||||||||||||||| | |||||||        |||||||||||||| ||||||||||||||    
T  54222385 tctaataataatttttagatggtccactggtgagagatttaattgaacctacaccctaaaattcatatatggatatagtgcataacaaattagatattta 54222286  T
Q  228 tattccatttttgatgacatatcgtg--tatctttttaaagtaaatagggtgaacatcgacatcattcagtaacaatatatcgtgtattcggccaaatca 325  Q
    |||||||||||| |||||||||| ||  ||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||||||||||||||||    
T  54222285 tattccattttttatgacatatcatgagtatctttttaaagtaaatatgatgcacatcgacatcattcaataacaatatatcgtgtattcggccaaatca 54222186  T
Q  326 ccctactatatttcactttaatagtatgatatgaagaaattattaatttactgtaaagagaaatgatatttgtactaccacttttt 411  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  54222185 ccctactatatttcactttaatagtatgacatgaagaaattattaatttaccgtaaagaggaatgatatttgtacaaccacttttt 54222100  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 411 - 507
Target Start/End: Complemental strand, 54221988 - 54221894
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcatctactgtaaaattgatttacattatcggagcatattcattaaactcatatttttc 507  Q
    |||||||||||||||||||||||| ||||||||||||||| |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  54221988 tcaccaaagttgtctaatattagttgtacaaatatcactcctctattgtaa--ttgatttacattatcggagcatattcattaaactcatatttttc 54221894  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 454
Target Start/End: Original strand, 961416 - 961459
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcatct 454  Q
    |||||||| |||| |||||||||| |||||||||||||||||||    
T  961416 tcaccaaaattgtttaatattagttgtacaaatatcactcatct 961459  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 34752081 - 34752161
Alignment:
Q  42 ggagaagatggaagagatagagctagaattgtgtatgcaaatgtattcatgttctcattttaattatcaacaaatctaaac 122  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34752081 ggagaagatggaagaaatagaggtagaattgtgtgtgcaaatgtattcatgttctcattttaattatcaacaaatctaaac 34752161  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 452
Target Start/End: Complemental strand, 2279254 - 2279213
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcat 452  Q
    ||||||||||||| ||||||||||  ||||||||||||||||    
T  2279254 tcaccaaagttgtataatattagtgatacaaatatcactcat 2279213  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 19330953 - 19330921
Alignment:
Q  379 taaagagaaatgatatttgtactaccacttttt 411  Q
    |||||||||||||||||||||| ||||||||||    
T  19330953 taaagagaaatgatatttgtacaaccacttttt 19330921  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 22588892 - 22588848
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcatcta 455  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  22588892 tcaccaaagttgtctaatattagttgtacaaatatcactcctcta 22588848  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 16829615 - 16829576
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactc 450  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  16829615 tcaccaaagttgtttaatattagttgtacaaatatcactc 16829576  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 16954036 - 16954075
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactc 450  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  16954036 tcaccaaagttgtttaatattagttgtacaaatatcactc 16954075  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 42663346 - 42663310
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatca 447  Q
    |||||||||||||||||||||||  ||||||||||||    
T  42663346 tcaccaaagttgtctaatattagatgtacaaatatca 42663310  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 45256662 - 45256626
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatca 447  Q
    |||||||||||||||||||||||  ||||||||||||    
T  45256662 tcaccaaagttgtctaatattagatgtacaaatatca 45256626  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 40874192 - 40874148
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcatcta 455  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||    
T  40874192 tcaccaaagttgtctaatattagttgtacaaatatcactcctcta 40874148  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 6265947 - 6265897
Alignment:
Q  52 gaagagatagagctagaattgtgtatgcaaatgtattcatgttctcatttt 102  Q
    |||||||||| | ||||||||||| || |||||| ||||||||||||||||    
T  6265947 gaagagatagggatagaattgtgtgtgaaaatgtgttcatgttctcatttt 6265897  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 9979094 - 9979127
Alignment:
Q  381 aagagaaatgatatttgtactaccactttttcac 414  Q
    |||||||||||||||||||| |||||||||||||    
T  9979094 aagagaaatgatatttgtacaaccactttttcac 9979127  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 32749996 - 32750029
Alignment:
Q  381 aagagaaatgatatttgtactaccactttttcac 414  Q
    |||||||||||||||||||| |||||||||||||    
T  32749996 aagagaaatgatatttgtacaaccactttttcac 32750029  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 844173 - 844212
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactc 450  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  844173 tcaccaaagttgtctaatattagttgtacaaatatcactc 844212  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 447
Target Start/End: Complemental strand, 6968643 - 6968607
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatca 447  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6968643 tcaccaaagttgtctaatattagttgtacaaatatca 6968607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 43057575 - 43057614
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactc 450  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  43057575 tcaccaaggttgtctaatattagttgtacaaatatcactc 43057614  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 30170663 - 30170621
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcactcatc 453  Q
    |||||||| |||||||| |||||| ||||||||||||||||||    
T  30170663 tcaccaaaattgtctaaaattagttgtacaaatatcactcatc 30170621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 37379369 - 37379331
Alignment:
Q  411 tcaccaaagttgtctaatattagtagtacaaatatcact 449  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  37379369 tcaccaaagtcgtctaatattagttgtacaaatatcact 37379331  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 40102022 - 40102054
Alignment:
Q  382 agagaaatgatatttgtactaccactttttcac 414  Q
    ||||||||||||||||||| |||||||||||||    
T  40102022 agagaaatgatatttgtacaaccactttttcac 40102054  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 413
Target Start/End: Original strand, 42716318 - 42716350
Alignment:
Q  381 aagagaaatgatatttgtactaccactttttca 413  Q
    |||||||||||||||||||| ||||||||||||    
T  42716318 aagagaaatgatatttgtacaaccactttttca 42716350  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Complemental strand, 30796152 - 30796120
Alignment:
Q  377 tgtaaagagaaatgatatttgtactaccacttt 409  Q
    |||||||||||||||||||||||| ||||||||    
T  30796152 tgtaaagagaaatgatatttgtacaaccacttt 30796120  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 22813066 - 22813098
Alignment:
Q  377 tgtaaagagaaatgatatttgtactaccacttt 409  Q
    |||||||||||||||||||||||| ||||||||    
T  22813066 tgtaaagagaaatgatatttgtacaaccacttt 22813098  T

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