View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5653_low_4 (Length: 248)
Name: NF5653_low_4
Description: NF5653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5653_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 1215469 - 1215238
Alignment:
| Q |
17 |
atgaacactaaacacgaatacgtcgacgccggtgataattttaaaaattgatataattaaatgtaactatatatgtcaatgttgaacaagaatatatgtt |
116 |
Q |
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| T |
1215469 |
atgaacactaaacacgaacacgtcgacgccagtgataattttaaaaattgatataattaaatgtgactatatatgtcaatgttgaacaagaacatatgtt |
1215370 |
T |
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| Q |
117 |
aagacatcaaaatacattcagcctcggagagatttacttcgaatagagagaataatatatgagaacaaaaacagtgatttattaaagtttgatcattttt |
216 |
Q |
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| T |
1215369 |
aagacatcaaaatacattcagcctcggggagatttacttcgaatagagagaataatatatgagaacaaaaacaatgatttattaaagtttgatcattttt |
1215270 |
T |
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| Q |
217 |
aatttaaaaacaagcttttagcgtagttttct |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1215269 |
aatttaaaaacaagcttttagcgtagttttct |
1215238 |
T |
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