View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5653_low_7 (Length: 228)
Name: NF5653_low_7
Description: NF5653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5653_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 33711004 - 33710782
Alignment:
| Q |
6 |
agccgtttcttcaaattcggctatgtaacagtgttatagcgccgctatttgaccacattttgtacaaacagcgtattgcgcggaacaatagcgatttgtt |
105 |
Q |
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| T |
33711004 |
agccgtttcttcaaattcggctatgtaacagtgttatagcgccgctatttgaccacattttgtacaaacagcgtattgcgcagaacaatagcgattcgtt |
33710905 |
T |
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| Q |
106 |
caaattccgatttgttataatatattgattgtttaatttatagaagcctaaagtcaatttggttgtttcaagtgcaggcacaagattcaagctttgtcaa |
205 |
Q |
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| T |
33710904 |
caaattccgattcgttataatatattgattgtttaatttatagaagcctaaagtcaatttggttgtttcaagtgtaggcacaagattcaagctttgtcaa |
33710805 |
T |
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| Q |
206 |
cacaccaacagtggcaggaaaaa |
228 |
Q |
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| T |
33710804 |
cacaccaacagtggcaggaaaaa |
33710782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 46937670 - 46937567
Alignment:
| Q |
10 |
gtttcttcaaattcggctatgtaacagtgttatagcgccgctatttgaccacattttgtac-aaacagcgtattgcgcggaacaatagcgatttgttcaa |
108 |
Q |
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| T |
46937670 |
gtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaatagcgcat--cgcggaacaatagcactttgttcaa |
46937573 |
T |
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| Q |
109 |
attccg |
114 |
Q |
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| T |
46937572 |
attccg |
46937567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 47847987 - 47848058
Alignment:
| Q |
46 |
gccgctatttgaccacattttgtacaaacagcgtattgcgcggaacaatagcgatttgttcaaattccgatttg |
119 |
Q |
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| T |
47847987 |
gccgctatttgacaacattttgtacaaatggcatat--cgtggaacaatagcgatttgttcaaattccgctttg |
47848058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 2990948 - 2991043
Alignment:
| Q |
15 |
ttcaaattcggctatgtaacagtgttatagcgccgctatttgaccacattttgtac-aaacagcgtattgcgcggaacaatagcgatttgttcaaatt |
111 |
Q |
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| T |
2990948 |
ttcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagcgtat--cgtggaacaaaagaaatttgttcaaatt |
2991043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 21754330 - 21754245
Alignment:
| Q |
18 |
aaattcggctatgtaacagtgttatagcgccgctatttgaccacattttgtac-aaacagcgtattgcgcggaacaatagcgatttgt |
104 |
Q |
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| T |
21754330 |
aaatttggctttgcaatagtgctatagcgccgctatttgacaacaatttgtactaaatagtgtat--cgcggaacaatagcgatttgt |
21754245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 27400563 - 27400535
Alignment:
| Q |
85 |
gcggaacaatagcgatttgttcaaattcc |
113 |
Q |
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| T |
27400563 |
gcggaacaatagcgatttgttcaaattcc |
27400535 |
T |
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