View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654-Insertion-11 (Length: 265)
Name: NF5654-Insertion-11
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654-Insertion-11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 12801910 - 12801652
Alignment:
| Q |
7 |
aattttttcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttg |
106 |
Q |
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| T |
12801910 |
aattttttcaatccaaatcgtacggattctccgcgtcaccactgctctgctccaaacttccgccattggcttttctcactgccggatttcggaggttttg |
12801811 |
T |
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| Q |
107 |
ttggttccgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatcc |
206 |
Q |
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| T |
12801810 |
ttggttccgttttgtatttacaacccgtaagagagtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatcc |
12801711 |
T |
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| Q |
207 |
gcaaatcttcttgttttaagttgttttgtgttggtctcaaaactcgtattgggtcggtc |
265 |
Q |
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| T |
12801710 |
gcaaatcttcttgttttaagttgttttgtgtttgtctcaaaacttgtattgggtcggtc |
12801652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 38112774 - 38112568
Alignment:
| Q |
8 |
attttttcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttg- |
106 |
Q |
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| T |
38112774 |
attttgtcaatccaaatcgaacagattctccgcatcaccgttgctctacacaaaacctccgttgttggcttttctcgctaccggatttcagaagttttga |
38112675 |
T |
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| Q |
107 |
ttggttccgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatcc |
206 |
Q |
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| T |
38112674 |
ttggttccgttttgtccgtacaacccgtaagagggtctgttctcaacagctccgcctccttt--ctgcggtggctgctcatggttcatgattggttgtcc |
38112577 |
T |
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| Q |
207 |
gcaaatctt |
215 |
Q |
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| T |
38112576 |
gcagatctt |
38112568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 15819079 - 15819260
Alignment:
| Q |
14 |
tcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttgttggttc |
113 |
Q |
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| T |
15819079 |
tcaacccaaatcgtacagattctctgcatcaccgttactctgcacaaaacttccgccgttggctttcctcgctgccggatttcggaagttttgt-----c |
15819173 |
T |
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| Q |
114 |
cgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatccgca |
209 |
Q |
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| T |
15819174 |
cgt---------acaacccgtaagcgggtctgttctcaacagctccgcctcctttcacggcggcggctggtcatggttcatgaatggttgtccgca |
15819260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 17360372 - 17360569
Alignment:
| Q |
16 |
aatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttg-ttggttcc |
114 |
Q |
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||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||||| |||||||| |
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| T |
17360372 |
aatccaaatcgattagattctccgcatcaccgttgctctacacaaaacttccgccgttggcttttctcgctgccggatttcagaggttttgcttggttcc |
17360471 |
T |
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| Q |
115 |
gttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatccgcaaat |
212 |
Q |
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| T |
17360472 |
gttttgttcgtacaacccgtaagagggtctgttctcaacagctccgcatactttcacagcggtggctgctcaagattcatcattggttgtctgcaaat |
17360569 |
T |
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