View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654-Insertion-12 (Length: 176)

Name: NF5654-Insertion-12
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654-Insertion-12
NF5654-Insertion-12
[»] chr2 (24 HSPs)
chr2 (8-176)||(28425759-28425929)
chr2 (8-82)||(11912806-11912880)
chr2 (8-82)||(37182649-37182723)
chr2 (9-74)||(38400785-38400850)
chr2 (8-82)||(12134089-12134163)
chr2 (8-82)||(16096987-16097061)
chr2 (32-83)||(16227441-16227492)
chr2 (20-82)||(21665761-21665823)
chr2 (8-61)||(9046029-9046082)
chr2 (8-61)||(24410437-24410490)
chr2 (8-61)||(29939911-29939964)
chr2 (8-76)||(22727551-22727619)
chr2 (9-61)||(26716128-26716180)
chr2 (9-80)||(7742184-7742255)
chr2 (27-82)||(13800613-13800668)
chr2 (27-82)||(24035613-24035668)
chr2 (32-82)||(11952679-11952729)
chr2 (8-61)||(6965007-6965060)
chr2 (8-61)||(10762614-10762667)
chr2 (19-53)||(480151-480185)
chr2 (8-61)||(3155217-3155270)
chr2 (8-61)||(4505894-4505947)
chr2 (45-82)||(10252387-10252424)
chr2 (9-61)||(12337498-12337550)
[»] chr8 (28 HSPs)
chr8 (9-175)||(39332455-39332622)
chr8 (8-115)||(5942642-5942750)
chr8 (8-82)||(7944571-7944645)
chr8 (8-96)||(41677223-41677311)
chr8 (19-83)||(5721538-5721602)
chr8 (8-82)||(15167464-15167538)
chr8 (6-65)||(8102909-8102968)
chr8 (8-78)||(11290168-11290238)
chr8 (8-82)||(15078738-15078812)
chr8 (8-61)||(10917392-10917445)
chr8 (20-82)||(23941152-23941214)
chr8 (25-79)||(25561559-25561613)
chr8 (8-82)||(34789911-34789985)
chr8 (8-61)||(5860793-5860846)
chr8 (8-61)||(13534735-13534788)
chr8 (8-61)||(13624275-13624328)
chr8 (8-61)||(23606678-23606731)
chr8 (8-61)||(23798310-23798363)
chr8 (8-61)||(30883330-30883383)
chr8 (8-61)||(41879182-41879235)
chr8 (8-61)||(42600783-42600836)
chr8 (8-61)||(45475818-45475871)
chr8 (130-176)||(5721442-5721488)
chr8 (20-82)||(34048768-34048830)
chr8 (8-61)||(2952270-2952323)
chr8 (34-82)||(14510057-14510105)
chr8 (25-73)||(38009205-38009252)
chr8 (8-71)||(5973156-5973219)
[»] chr3 (25 HSPs)
chr3 (8-108)||(25855378-25855479)
chr3 (8-82)||(54574876-54574950)
chr3 (8-82)||(26279523-26279599)
chr3 (9-82)||(789919-789992)
chr3 (8-96)||(28689410-28689498)
chr3 (8-61)||(8073387-8073440)
chr3 (8-61)||(21582775-21582828)
chr3 (8-61)||(29620437-29620490)
chr3 (8-61)||(34290685-34290738)
chr3 (8-61)||(43207287-43207339)
chr3 (8-61)||(44708481-44708534)
chr3 (8-61)||(53506933-53506986)
chr3 (8-53)||(54407207-54407252)
chr3 (8-61)||(54619252-54619305)
chr3 (20-96)||(52374626-52374701)
chr3 (6-61)||(9878734-9878789)
chr3 (8-103)||(32319204-32319299)
chr3 (8-59)||(38681142-38681193)
chr3 (8-82)||(8420309-8420383)
chr3 (130-176)||(23641466-23641512)
chr3 (20-57)||(36179562-36179599)
chr3 (8-61)||(47467688-47467741)
chr3 (35-83)||(29598089-29598137)
chr3 (8-60)||(37168372-37168424)
chr3 (26-82)||(52973379-52973435)
[»] chr7 (24 HSPs)
chr7 (8-80)||(36891560-36891632)
chr7 (27-82)||(7398431-7398486)
chr7 (8-82)||(9021848-9021921)
chr7 (8-106)||(6765729-6765828)
chr7 (27-82)||(27237490-27237545)
chr7 (8-82)||(23859053-23859127)
chr7 (25-82)||(9014827-9014884)
chr7 (8-61)||(23551119-23551172)
chr7 (20-82)||(12419555-12419617)
chr7 (8-61)||(20091329-20091382)
chr7 (8-61)||(48983892-48983945)
chr7 (9-96)||(18201103-18201190)
chr7 (26-83)||(23020549-23020606)
chr7 (8-61)||(47985018-47985071)
chr7 (9-73)||(12981315-12981379)
chr7 (8-82)||(2611310-2611384)
chr7 (8-78)||(17800269-17800339)
chr7 (11-61)||(24525736-24525786)
chr7 (19-61)||(25010434-25010476)
chr7 (8-61)||(8171587-8171640)
chr7 (8-61)||(10955485-10955538)
chr7 (8-61)||(29077221-29077274)
chr7 (8-61)||(38414924-38414977)
chr7 (130-174)||(23744713-23744757)
[»] scaffold1590 (1 HSPs)
scaffold1590 (8-82)||(307-381)
[»] chr1 (28 HSPs)
chr1 (8-82)||(38547084-38547158)
chr1 (8-82)||(39134771-39134845)
chr1 (20-82)||(45758485-45758547)
chr1 (28-96)||(26803925-26803993)
chr1 (8-82)||(43235818-43235892)
chr1 (8-82)||(5533303-5533377)
chr1 (8-61)||(9173071-9173124)
chr1 (8-61)||(9181053-9181106)
chr1 (8-61)||(17168968-17169021)
chr1 (8-82)||(33170750-33170824)
chr1 (8-61)||(27559649-27559702)
chr1 (8-61)||(41697185-41697238)
chr1 (8-80)||(38853516-38853587)
chr1 (8-101)||(6221649-6221743)
chr1 (8-61)||(5027561-5027614)
chr1 (8-61)||(5316692-5316745)
chr1 (8-61)||(19955729-19955782)
chr1 (8-61)||(23185439-23185492)
chr1 (8-60)||(51607488-51607540)
chr1 (22-65)||(10926016-10926059)
chr1 (8-63)||(50881440-50881495)
chr1 (8-61)||(3406430-3406483)
chr1 (8-61)||(3440337-3440390)
chr1 (8-61)||(4971666-4971719)
chr1 (8-61)||(14146312-14146365)
chr1 (8-45)||(35392298-35392335)
chr1 (8-61)||(44655753-44655806)
chr1 (8-59)||(16140069-16140120)
[»] chr6 (15 HSPs)
chr6 (21-82)||(20611773-20611834)
chr6 (8-82)||(21183724-21183798)
chr6 (9-82)||(2477634-2477707)
chr6 (8-81)||(6159422-6159495)
chr6 (8-61)||(20711769-20711822)
chr6 (8-61)||(27788737-27788790)
chr6 (8-61)||(13727448-13727501)
chr6 (8-61)||(21479498-21479551)
chr6 (8-61)||(28075787-28075840)
chr6 (8-61)||(33774121-33774174)
chr6 (9-57)||(1155899-1155947)
chr6 (8-61)||(19737741-19737794)
chr6 (26-59)||(27994775-27994808)
chr6 (8-60)||(21280550-21280602)
chr6 (9-44)||(30121783-30121818)
[»] chr5 (27 HSPs)
chr5 (8-89)||(10543647-10543727)
chr5 (8-80)||(2530943-2531015)
chr5 (20-83)||(14318443-14318506)
chr5 (20-82)||(2024700-2024762)
chr5 (8-82)||(2412068-2412142)
chr5 (20-82)||(11242376-11242438)
chr5 (8-82)||(36868922-36868996)
chr5 (8-175)||(41911663-41911831)
chr5 (8-82)||(1366572-1366646)
chr5 (8-82)||(33037760-33037834)
chr5 (8-61)||(9364292-9364345)
chr5 (8-61)||(19523200-19523253)
chr5 (8-60)||(27924084-27924136)
chr5 (34-82)||(34425883-34425931)
chr5 (8-74)||(24395727-24395793)
chr5 (27-73)||(40794392-40794438)
chr5 (8-61)||(2274891-2274944)
chr5 (8-61)||(16198840-16198893)
chr5 (8-61)||(16799373-16799426)
chr5 (8-61)||(23284108-23284161)
chr5 (8-61)||(28822388-28822441)
chr5 (8-61)||(34756412-34756465)
chr5 (8-61)||(38869409-38869462)
chr5 (8-61)||(40389582-40389635)
chr5 (8-61)||(15480135-15480188)
chr5 (8-61)||(27079012-27079065)
chr5 (8-83)||(22648782-22648857)
[»] scaffold0182 (1 HSPs)
scaffold0182 (8-107)||(24042-24141)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-83)||(230908-230983)
[»] chr4 (35 HSPs)
chr4 (20-81)||(52468272-52468333)
chr4 (8-82)||(40217217-40217291)
chr4 (8-65)||(4167939-4167996)
chr4 (9-82)||(27112015-27112088)
chr4 (10-71)||(37744960-37745021)
chr4 (8-61)||(40089522-40089575)
chr4 (8-74)||(36362919-36362984)
chr4 (9-83)||(45656159-45656233)
chr4 (8-61)||(2790789-2790842)
chr4 (8-61)||(37777271-37777324)
chr4 (8-61)||(43455579-43455632)
chr4 (8-61)||(54780783-54780836)
chr4 (6-82)||(24396919-24396995)
chr4 (8-63)||(5128890-5128945)
chr4 (31-82)||(51691988-51692039)
chr4 (8-62)||(35779373-35779427)
chr4 (8-82)||(36178658-36178731)
chr4 (8-61)||(16845027-16845080)
chr4 (8-73)||(29425222-29425287)
chr4 (8-61)||(34027585-34027638)
chr4 (8-61)||(38209639-38209692)
chr4 (32-83)||(15735079-15735130)
chr4 (2-61)||(23509840-23509899)
chr4 (11-61)||(19498510-19498560)
chr4 (19-61)||(24969443-24969485)
chr4 (20-82)||(39329452-39329514)
chr4 (8-61)||(1105538-1105591)
chr4 (8-65)||(2135369-2135426)
chr4 (8-61)||(10978906-10978959)
chr4 (8-53)||(32128598-32128643)
chr4 (8-61)||(34768622-34768675)
chr4 (8-61)||(47128993-47129046)
chr4 (8-61)||(54083290-54083343)
chr4 (8-59)||(35465115-35465166)
chr4 (32-83)||(36118530-36118581)
[»] scaffold0227 (1 HSPs)
scaffold0227 (8-73)||(16016-16081)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-65)||(206538-206595)
[»] scaffold1320 (1 HSPs)
scaffold1320 (8-82)||(1334-1408)
[»] scaffold0018 (1 HSPs)
scaffold0018 (8-82)||(173559-173633)
[»] scaffold0039 (1 HSPs)
scaffold0039 (8-61)||(106539-106592)
[»] scaffold0097 (1 HSPs)
scaffold0097 (8-73)||(38914-38979)
[»] scaffold0001 (1 HSPs)
scaffold0001 (12-61)||(181920-181969)
[»] scaffold0022 (2 HSPs)
scaffold0022 (19-82)||(40065-40128)
scaffold0022 (19-82)||(138125-138188)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-83)||(350269-350332)
[»] scaffold0070 (1 HSPs)
scaffold0070 (8-61)||(1344-1397)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 9e-44; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 28425759 - 28425929
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacacttagtagtact 107  Q
    |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||    
T  28425759 gtatatatgcagtacacccaaatgtgaaaatcactaccatatatatgaggaacctcaagcctccctcccaaaaaacactcacctaacacttagtagtact 28425858  T
Q  108 acttgactgtaa--nnnnnnnnnnaggcccataccttggggtggtccagttccgttgagcggtttgcacac 176  Q
    ||| |||| |||            ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  28425859 actggactataatttttttttttgaggcccataccttggggtggtccagttccattgagtggtttgcacac 28425929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 11912806 - 11912880
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  11912806 gtatatatgcaatacatccaaagatgaaaatcactaccgtatacataaggaacctcaaaccaccctcccaaaaaa 11912880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 37182723 - 37182649
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  37182723 gtatatatgcaatacacccaaaagtgaaaatcactaccgtatacatgaggaacctcaaatcaccctcccaaaaaa 37182649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 38400850 - 38400785
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctc 74  Q
    |||||||||  ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  38400850 tatatatgcgatacattcaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccctc 38400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 12134089 - 12134163
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| ||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||    
T  12134089 gtatatatgcgatacacccaaaagtgaaaatcactaccgtatacattaggaacctcaaaccaccctcccacaaaa 12134163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 16097061 - 16096987
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| |||||||||||||| |||||| ||||||||||||||||||| ||||| | ||||||||    
T  16097061 gtatatatgatgtacacccaaaggtgaaaattactaccttatacatgaggaacctcaaaccaccattccaaaaaa 16096987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 16227441 - 16227492
Alignment:
Q  32 tgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  16227441 tgaaaatcactactatatacataaggaacctcaaaccaccctcccaaaaaac 16227492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 21665761 - 21665823
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||| ||| ||||||||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  21665761 tacatcaaaatgtgaaaatcactaccgtatacatgaggaaccacaaaccaccctcctaaaaaa 21665823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 9046082 - 9046029
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  9046082 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9046029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 24410490 - 24410437
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  24410490 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24410437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 29939911 - 29939964
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  29939911 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 29939964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 22727551 - 22727619
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctccc 76  Q
    |||||||||| ||||| ||||| |||||||||||||||||||||||||  | |||||| ||||| ||||    
T  22727551 gtatatatgcggtacacccaaaagtgaaaatcactaccatatacatgataaccctcaaaccaccatccc 22727619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 26716180 - 26716128
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  26716180 tatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 26716128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 7742184 - 7742255
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaa 80  Q
    |||||||||  ||||||||||||||||||  |||| | ||| ||||||||||||||| |||| |||||||||    
T  7742184 tatatatgcgttacatccaaaggtgaaaaatactatcgtatgcatgaggaacctcaaaccactctcccaaaa 7742255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 13800613 - 13800668
Alignment:
Q  27 aaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||||||||| ||||||| ||||||||||||  |||| ||||||||||    
T  13800613 aaaggtgaaaatcactactatatacacgaggaacctcaaatcaccttcccaaaaaa 13800668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 24035613 - 24035668
Alignment:
Q  27 aaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||||||||||  |||||||||||| | ||| ||||||||||||||||    
T  24035613 aaaggtgaaaatcactaccgcatacatgaggaatcgcaaaccaccctcccaaaaaa 24035668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 11952679 - 11952729
Alignment:
Q  32 tgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||||   |||||||||||||||||| ||||||||||||||||    
T  11952679 tgaaaatcactactgcatacatgaggaacctcaaaccaccctcccaaaaaa 11952729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 6965060 - 6965007
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  6965060 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 6965007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 10762614 - 10762667
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||  ||||| |||||||||||||| |||||| |||||||||||||||    
T  10762614 gtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 10762667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 480185 - 480151
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacat 53  Q
    ||||||||||||||||||||||||| |||||||||    
T  480185 gtacatccaaaggtgaaaatcactatcatatacat 480151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 3155270 - 3155217
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| | | |||||||||| |||||| |||||||||||||||    
T  3155270 gtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacc 3155217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 4505947 - 4505894
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||| ||||| |||||| |||||||||||||||    
T  4505947 gtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 4505894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 10252424 - 10252387
Alignment:
Q  45 catatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  10252424 catatacatgaggaacctcaaaccaccctccaaaaaaa 10252387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 12337498 - 12337550
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||  ||||| ||| |||||||||| |||||| |||||||||||||||    
T  12337498 tatatatgtggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 12337550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 39332455 - 39332622
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa-acgctcacataacacttagtagtact 107  Q
    |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| || | ||| ||| ||||| |||||||    
T  39332455 tatataagcggtacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccctctcaaaaacacacccacctaaaacttaatagtact 39332554  T
Q  108 acttgactgtaannnnnnnnnnaggcccataccttggggtggtccagttccgttgagcggtttgcaca 175  Q
    | | |||| |||          |||||||| ||||||||  |||||||||| ||||||||||||||||    
T  39332555 attggactataattcttttatgaggcccatgccttggggatgtccagttccattgagcggtttgcaca 39332622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 5942750 - 5942642
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa-cgctcacataacacttagtagtac 106  Q
    |||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |   ||| ||||||||||||||||    
T  5942750 gtatatgtgcggtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccaaaaaagcatccacctaacacttagtagtac 5942651  T
Q  107 tacttgact 115  Q
    |||| ||||    
T  5942650 tactggact 5942642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 7944571 - 7944645
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  7944571 gtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcccaaaaaa 7944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 41677223 - 41677311
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacac 96  Q
    ||||||||||  |||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||| | ||| ||||||    
T  41677223 gtatatatgcgatacatctaaaggtgaaaatcactactgtatacatgaggaacctcaaaccaccctccaaaaaaacacccacctaacac 41677311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 5721602 - 5721538
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||| ||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  5721602 gtacacccaaaagtgaaaatcactaccgtatacctgaggaacctcaaaccaccctcccaaaaaac 5721538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 15167464 - 15167538
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| ||||| ||||||||||||| | ||||||||||||||||||| ||||||| ||||||||    
T  15167464 gtatatatgcgatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacccttccaaaaaa 15167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 8102968 - 8102909
Alignment:
Q  6 cagtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaa 65  Q
    |||||||||||| ||||| | |||||||||||||| |||| |||||||||||||||||||    
T  8102968 cagtatatatgcggtacacctaaaggtgaaaatcattaccgtatacatgaggaacctcaa 8102909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 11290238 - 11290168
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaa 78  Q
    |||||||||  |||||  |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||    
T  11290238 gtatatatgttgtacactcaaaggtgaaaatcactaccgtatacatgagcaacctcaaaccaccatcccaa 11290168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 15078812 - 15078738
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| ||||| ||||||||||||| | ||||||||||||||||||| |||| || ||||||||    
T  15078812 gtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacgcttccaaaaaa 15078738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 10917445 - 10917392
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  10917445 gtatatatgcggtacacccaaaggtgaaaatgactaccttatacatgaggaacc 10917392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 23941152 - 23941214
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||| |||||| |||||||||| | |||||| | |||||||||||| ||||||||||||||||    
T  23941152 tacacccaaagatgaaaatcacaatcatatatacgaggaacctcaaaccaccctcccaaaaaa 23941214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 25561559 - 25561613
Alignment:
Q  25 ccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaa 79  Q
    ||||| |||||||||||| || ||||||||||||||||||| ||||||| |||||    
T  25561559 ccaaatgtgaaaatcactgccgtatacatgaggaacctcaaaccacccttccaaa 25561613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 34789911 - 34789985
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||||||||||||||||||| |||||||||| ||  |||| ||||| ||| ||||||    
T  34789911 gtatatatgttgtacacccaaaggtgaaaatcactaccgtatacatgagaaatatcaaaccaccatcctaaaaaa 34789985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 5860793 - 5860846
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||    
T  5860793 gtatatatgcggtacacccagaggtgaaaatgactaccatatacatgagaaacc 5860846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 13534735 - 13534788
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  13534735 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13534788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 13624275 - 13624328
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  13624275 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13624328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23606678 - 23606731
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||    
T  23606678 gtatatatgcggtacacccaaaggtaaaaatgactaccgtatacatgaggaacc 23606731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23798310 - 23798363
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  23798310 gtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 23798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 30883383 - 30883330
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  30883383 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 30883330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 41879235 - 41879182
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| ||||||  ||||||||| ||||    
T  41879235 gtatatatgcggtacatccaaaggtgaaaatgactaccgaatacatgagaaacc 41879182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 42600836 - 42600783
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||  ||||| |||||||||||||| |||||| |||||||||||||||    
T  42600836 gtatatatgtggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 42600783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 45475871 - 45475818
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  45475871 gtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacc 45475818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 5721488 - 5721442
Alignment:
Q  130 aggcccataccttggggtggtccagttccgttgagcggtttgcacac 176  Q
    |||||||| |||||||| || |||||||| |||||||||||||||||    
T  5721488 aggcccatgccttggggaggcccagttccattgagcggtttgcacac 5721442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 34048768 - 34048830
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||| |||||| |||||||||||||  |||||||||||| |||||  ||||||||| ||||||    
T  34048768 tacacccaaagatgaaaatcactactgtatacatgaggatcctcataccaccctccaaaaaaa 34048830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 2952270 - 2952323
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| || ||||||| |||||| |||||||||||||||    
T  2952270 gtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 2952323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 14510057 - 14510105
Alignment:
Q  34 aaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||| |||||||||| |||||||| ||||| || |||||||    
T  14510057 aaaatcactaccgtatacatgagtaacctcaaaccaccatctcaaaaaa 14510105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 38009205 - 38009252
Alignment:
Q  25 ccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    |||||||||||||| |||||||||||||||| ||| ||||| |||||||    
T  38009205 ccaaaggtgaaaattactaccatatacatga-gaaactcaaaccaccct 38009252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 5973156 - 5973219
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccacc 71  Q
    |||||||||  ||||| ||| || ||||||||| |||| |||||| |||||||||||| |||||    
T  5973156 gtatatatgttgtacacccatagatgaaaatcattaccgtatacacgaggaacctcaaaccacc 5973219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 25855479 - 25855378
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaa-aaaacgctcacataacacttagtagtac 106  Q
    ||||||||| ||| || |||||| |||||||||||||| |||||| || ||||||||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  25855479 gtatatatgtagtgcacccaaagttgaaaatcactaccgtatacacgaagaacctcaaaccaccctcccaaaaaaacactcacctaacacttagtagtac 25855380  T
Q  107 ta 108  Q
    ||    
T  25855379 ta 25855378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 54574876 - 54574950
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || |||||||||||||    
T  54574876 gtatatatgcggtacacccaaaagtaaaaatcactaccatatacatgaggaacctcaaaccgccctcccaaaaaa 54574950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 26279599 - 26279523
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactac-cat-atacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||| |||| |||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||||||    
T  26279599 gtatatatgcaatacacccaaagatgaaaatcactacacattatacatgaggaacctcaaaccaccctcccaaaaaa 26279523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 789992 - 789919
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||  ||||| |||||||| |||||||| ||||||||||||||||||||||| |||||  |||||||||    
T  789992 tatatatgttgtacacccaaaggtaaaaatcaccaccatatacatgaggaacctcaaaccaccaacccaaaaaa 789919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 28689410 - 28689498
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacac 96  Q
    ||||||||||  || |||||||||||||||||||| || |||||||||| || ||||| | ||||||||||||||| | ||| ||||||    
T  28689410 gtatatatgcgatatatccaaaggtgaaaatcactgccgtatacatgagaaatctcaaactaccctcccaaaaaacacccacctaacac 28689498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8073387 - 8073440
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  8073387 gtatatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 8073440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 21582828 - 21582775
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  21582828 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 21582775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 29620437 - 29620490
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||| ||||| |||||||||| |||||| |||||||||||||||    
T  29620437 gtatatatgcggtatatccagaggtgaaaatgactaccgtatacatgaggaacc 29620490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 34290685 - 34290738
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||| ||||||||||    
T  34290685 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 34290738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43207287 - 43207339
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  43207287 gtatatatgcggtacatc-aaaggtgaaaatgactaccgtatacatgaggaacc 43207339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 44708534 - 44708481
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||| | ||||| |||||||||||||| |||||| |||||||||||||||    
T  44708534 gtatatatccggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 44708481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 53506933 - 53506986
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||| ||||    
T  53506933 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacc 53506986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 54407207 - 54407252
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacat 53  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||    
T  54407207 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatacat 54407252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 54619252 - 54619305
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  54619252 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 54619305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 52374701 - 52374626
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacac 96  Q
    |||||| ||||| ||||||||||||| ||||||||| ||||||||  ||| ||||||||||||| | ||| ||||||    
T  52374701 tacatctaaaggagaaaatcactaccgtatacatgaagaacctcatacca-cctcccaaaaaacacccacctaacac 52374626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 9878734 - 9878789
Alignment:
Q  6 cagtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||||| ||||| |||||||||||||| |||| | ||||||| |||||||    
T  9878734 cagtatatatgcggtacacccaaaggtgaaaatgactatcgtatacataaggaacc 9878789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 32319204 - 32319299
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacacttagtag 103  Q
    |||||||||| ||||| |||||||||||||| |||| | |||| | |||||||||||| | || |||| |||| |  | ||| |||||||||||||    
T  32319204 gtatatatgcggtacacccaaaggtgaaaattactatcttatatacgaggaacctcaaactactctccaaaaacatacccacctaacacttagtag 32319299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 38681142 - 38681193
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaa 59  Q
    |||| ||||| ||||||||| |||||||||| |||||| |||||||||||||    
T  38681142 gtatgtatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaa 38681193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8420383 - 8420309
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||| |||||||||||| || |||| | |||||||||||| ||||| | ||||||||    
T  8420383 gtatatatgttgtacacccaaatgtgaaaatcactgccgtatatacgaggaacctcaaaccaccattccaaaaaa 8420309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 23641466 - 23641512
Alignment:
Q  130 aggcccataccttggggtggtccagttccgttgagcggtttgcacac 176  Q
    ||||||||||||||||| || || ||||| |||||||||||||||||    
T  23641466 aggcccataccttggggaggcccggttccattgagcggtttgcacac 23641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 36179562 - 36179599
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgagg 57  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  36179562 tacatccaaaggtgaaaatcactgccatatacacgagg 36179599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 47467741 - 47467688
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||||  |||| ||| |||||||||| |||||| |||||||||||||||    
T  47467741 gtatatatgcgatacacccagaggtgaaaatgactaccgtatacatgaggaacc 47467688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 29598137 - 29598089
Alignment:
Q  35 aaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||| |||||||    
T  29598137 aaatcactaccgtatacatgaggaatctcaaaccagcctccaaaaaaac 29598089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 37168424 - 37168372
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaac 60  Q
    |||||||||  ||| | |||||||||||||| |||||| ||||||||||||||    
T  37168424 gtatatatgtggtatacccaaaggtgaaaatgactaccgtatacatgaggaac 37168372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 52973435 - 52973379
Alignment:
Q  26 caaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||| |||||||||||||  ||| ||||| |||| |||| ||||||||||||||||    
T  52973435 caaagatgaaaatcactactgtatgcatgatgaacttcaaaccaccctcccaaaaaa 52973379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 36891632 - 36891560
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaa 80  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  36891632 gtatatattcggtacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccatcctcccaaaa 36891560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 7398486 - 7398431
Alignment:
Q  27 aaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7398486 aaaggtgaaaatcactaccatatacatgaggaacctcaaaccaccctcccaaaaaa 7398431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 9021848 - 9021921
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  9021848 gtatatatgcggtacacccaaaggtgaaaatcactaccgtatacatgagg-acctcaaaccaccctcccaaaaaa 9021921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 6765729 - 6765828
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa-acgctcacataacacttagtagtac 106  Q
    ||||||| || ||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||| ||||||| || | ||| |||||||||| |||||    
T  6765729 gtatataagccgtacatccaaaggtgaaaatcactaccgtatataagagtaacctcaaaccacccttccaaaaacacacccacctaacacttagcagtac 6765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 27237490 - 27237545
Alignment:
Q  27 aaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  27237490 aaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccctcccaaaaaa 27237545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 23859127 - 23859053
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| |||||| ||||||| |||||| |||||||||||| |||||| ||||||||||||||||    
T  23859127 gtatatatgcgatacacccaaagatgaaaattactaccgtatacatgaggatcctcaaaccaccctcccaaaaaa 23859053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9014827 - 9014884
Alignment:
Q  25 ccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||    
T  9014827 ccaaaggtgaaaatcactaccgtatacatgagtaacctcaaatcaccctcccaaaaaa 9014884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23551119 - 23551172
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  23551119 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 23551172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 12419555 - 12419617
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||| ||||||||||||    |||||||||||||||||| ||||||||||||||||    
T  12419555 tacatccaaagatgaaaatcactattgaatacatgaggaacctcaaaccaccctcccaaaaaa 12419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 20091329 - 20091382
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  20091329 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20091382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 48983892 - 48983945
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  48983892 gtatatatgcggtacacccaaaggtgaaaataactaccgtatacatgaggaacc 48983945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 18201190 - 18201103
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacac 96  Q
    ||||||||  ||||| | || ||||||||||  |||| || |||||||||||||||| ||||||||| ||||||| ||||| ||||||    
T  18201190 tatatatgtggtacacctaagggtgaaaatcgttaccttacacatgaggaacctcaaaccaccctcctaaaaaacactcacctaacac 18201103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 23020549 - 23020606
Alignment:
Q  26 caaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    |||||||||||||||||||| |||||||||||||| ||||  || |||| ||||||||    
T  23020549 caaaggtgaaaatcactaccgtatacatgaggaacttcaaatcatcctctcaaaaaac 23020606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 47985018 - 47985071
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| || ||| |||||||||||||||    
T  47985018 gtatatatgcggtacacccaaaggtgaaaatgaccaccgtatacatgaggaacc 47985071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 12981379 - 12981315
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    |||||| || |||||  |||||||||||||||||||  |||| |||||||||||||| |||||||    
T  12981379 tatatacgcggtacacacaaaggtgaaaatcactactgtatatatgaggaacctcaaaccaccct 12981315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 2611310 - 2611384
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||| |||||  ||| |||||||||||| ||  ||||||||||||||||||| | | ||||||| ||||    
T  2611310 gtatatatgcggtacacacaatggtgaaaatcacaactgtatacatgaggaacctcaaacgatcctcccagaaaa 2611384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 17800269 - 17800339
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaa 78  Q
    |||||||||  ||||| ||||| ||||||||||||||| ||| |||||||||  |||| ||||| ||||||    
T  17800269 gtatatatgttgtacacccaaaagtgaaaatcactaccgtatgcatgaggaatttcaaaccaccatcccaa 17800339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 24525736 - 24525786
Alignment:
Q  11 tatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  24525736 tatatgcggtacacccaaaagtgaaaatgactaccgtatacatgaggaacc 24525786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 25010476 - 25010434
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  25010476 gtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 25010434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 8171587 - 8171640
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| || ||||||| |||||| |||||||||||||||    
T  8171587 gtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 8171640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 10955538 - 10955485
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||  || |||||||||| |||||| |||||||||||||||    
T  10955538 gtatatatgcggtacactcagaggtgaaaatgactaccgtatacatgaggaacc 10955485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 29077274 - 29077221
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| | | |||||||||| |||||| |||||||||||||||    
T  29077274 gtatatatgcggtacaccaagaggtgaaaatgactaccgtatacatgaggaacc 29077221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 38414924 - 38414977
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||  ||||| |||||||||||||| |||||  |||||||||||||||    
T  38414924 gtatatatgtggtacacccaaaggtgaaaatgactactgtatacatgaggaacc 38414977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 23744757 - 23744713
Alignment:
Q  130 aggcccataccttggggtggtccagttccgttgagcggtttgcac 174  Q
    ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  23744757 aggcccataacttggggaggtctagttccattgagcggtttgcac 23744713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 307 - 381
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  307 gtatatatgcggtacacccaaatgtgaaaatcactaccgtatacatgatgaacctcaaaccaccctcccaaaaaa 381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 38547084 - 38547158
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  38547084 gtatatatgtggtacacccaaatgtgaaaatcactatcatatacatgaggaacctcaaaccaccctcccaaaaaa 38547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 39134771 - 39134845
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||| |||| |||||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||    
T  39134771 gtatatatgcaatacacccaaaggtgataatcactactgtatacatgaggaacctcaaaccaccctcccaaaaaa 39134845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 45758547 - 45758485
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  45758547 tacatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaaccaccatcccaaaaaa 45758485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 26803993 - 26803925
Alignment:
Q  28 aaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacac 96  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||||    
T  26803993 aaggtgaaaatcactaccgtatacatgagaaacctcaaaccaccctcccaaaaaacactcacctaacac 26803925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 43235818 - 43235892
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||    
T  43235818 gtatatatgatgtacacccaaaggtgaaaatcactatcgtatacatgaggaacctcaaaccaccatcccaaaaaa 43235892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 5533377 - 5533303
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  |||||  |||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||    
T  5533377 gtatatatgatgtacaatcaaaggtgaaaatcactaccgtatacatgaggaaactcaaaccaccatcccaaaaaa 5533303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 9173071 - 9173124
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  9173071 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 9173124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 9181053 - 9181106
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  9181053 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 9181106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 17169021 - 17168968
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  17169021 gtatatatgcggtacacccaaaggtgaaaatgactaccatatacatgaggaacc 17168968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 33170824 - 33170750
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||| ||||| | || |||||||||||||||| |||||||||| ||||| || ||||||||| ||||||    
T  33170824 gtatatatgcggtacaccaaatggtgaaaatcactaccgtatacatgagaaaccttaaaccaccctcctaaaaaa 33170750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27559702 - 27559649
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  27559702 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27559649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 41697185 - 41697238
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||||||||||||| | |||||||| |||||| |||||||||||||||    
T  41697185 gtatatatgcagtacatccagaagtgaaaatgactaccgtatacatgaggaacc 41697238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 38853587 - 38853516
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaa 80  Q
    |||||||||  ||| ||||||||||||||||||||||| ||||||||| ||||||||| ||| | ||||||||    
T  38853587 gtatatatgttgtatatccaaaggtgaaaatcactaccgtatacatga-gaacctcaaaccatcatcccaaaa 38853516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 6221743 - 6221649
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa-acgctcacataacacttagt 101  Q
    ||||||| || ||||||| ||| |||||||||| || | |||| |||||||||||||| ||||||| ||||||| || | ||| |||||||||||    
T  6221743 gtatataagcggtacatcaaaatgtgaaaatcattatcgtatatatgaggaacctcaaaccacccttccaaaaacacacccacctaacacttagt 6221649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5027614 - 5027561
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||| ||||||||||    
T  5027614 gtatatatgcggtacacccataggtgaaaatgactaccatatagatgaggaacc 5027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 5316745 - 5316692
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  5316745 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 5316692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 19955782 - 19955729
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||| ||||||||||    
T  19955782 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatatatgaggaacc 19955729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 23185492 - 23185439
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  23185492 gtatatatgcggtacacccataggtgaaaatgactaccgtatacatgaggaacc 23185439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 51607488 - 51607540
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaac 60  Q
    |||||||||| ||||| ||||| |||||||| |||||| ||||||||||||||    
T  51607488 gtatatatgcggtacacccaaacgtgaaaatgactaccgtatacatgaggaac 51607540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 10926016 - 10926059
Alignment:
Q  22 catccaaaggtgaaaatcactaccatatacatgaggaacctcaa 65  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||    
T  10926016 catccaaagatgaaaatcactaccgtatacatgaggatcctcaa 10926059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 50881495 - 50881440
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctc 63  Q
    |||||||||| ||||||| | |||||||||| |||||  |||||||||||||||||    
T  50881495 gtatatatgcggtacatctagaggtgaaaatgactacagtatacatgaggaacctc 50881440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 3406483 - 3406430
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||||||||||  |  |||||||||| |||||| |||||||||||||||    
T  3406483 gtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacc 3406430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 3440337 - 3440390
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||||||||||  |  |||||||||| |||||| |||||||||||||||    
T  3440337 gtatatatgcagtacactcggaggtgaaaatgactaccgtatacatgaggaacc 3440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 4971666 - 4971719
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| | |||||||| |||||| |||||||||||||||    
T  4971666 gtatatatgcggtacacccataagtgaaaatgactaccgtatacatgaggaacc 4971719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 14146365 - 14146312
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| || ||||||| |||||| |||||||||||||||    
T  14146365 gtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 14146312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 35392335 - 35392298
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactacc 45  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  35392335 gtatatatgcggtatatccaaaggtgaaaatcactacc 35392298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 44655806 - 44655753
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||| ||||| |||||| |||||||||||||||    
T  44655806 gtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 44655753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 16140120 - 16140069
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaa 59  Q
    |||||||||| ||||| | | |||||||||| |||||| |||||||||||||    
T  16140120 gtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaa 16140069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 7e-20; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 20611834 - 20611773
Alignment:
Q  21 acatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  20611834 acatccaaaggtgaaaatcactaccgtatacatgaggaacctcaaactaccctcccaaaaaa 20611773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 21183724 - 21183798
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| |||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||||    
T  21183724 gtatatatgtggtacacccaaagttgaaaatcactaccgtatacatgaggaacctcaaaccacccacccaaaaaa 21183798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 2477634 - 2477707
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  |||| | ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  2477634 tatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccagaaaa 2477707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 6159495 - 6159422
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa 81  Q
    |||||||||| |||||| |||||||| ||||||||||| |||| || ||||||||||| ||||||| |||||||    
T  6159495 gtatatatgcggtacattcaaaggtggaaatcactaccgtatatataaggaacctcaaaccacccttccaaaaa 6159422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 20711769 - 20711822
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  20711769 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 20711822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 27788737 - 27788790
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  27788737 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 27788790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 13727448 - 13727501
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  13727448 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 13727501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 21479551 - 21479498
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  21479551 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 21479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 28075840 - 28075787
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||||  |||| |||||||||||||| |||||| |||||||||||||||    
T  28075840 gtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 28075787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 33774174 - 33774121
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||||| |||||||| |||||| |||||||||||||||    
T  33774174 gtatatatgcggtacacccaaatgtgaaaatgactaccgtatacatgaggaacc 33774121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 1155899 - 1155947
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgagg 57  Q
    ||||||||| ||||||||| |||||||||| |||||| |||||||||||    
T  1155899 tatatatgcggtacatccagaggtgaaaatgactaccgtatacatgagg 1155947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 19737741 - 19737794
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| | | |||||||||| |||||| |||||||||||||||    
T  19737741 gtatatatgcggtacacctagaggtgaaaatgactaccgtatacatgaggaacc 19737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 27994808 - 27994775
Alignment:
Q  26 caaaggtgaaaatcactaccatatacatgaggaa 59  Q
    |||||||||||||||||||| |||||||||||||    
T  27994808 caaaggtgaaaatcactaccgtatacatgaggaa 27994775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 21280602 - 21280550
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaac 60  Q
    |||||||||| ||||| ||| |||| ||||| |||||| ||||||||||||||    
T  21280602 gtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaac 21280550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 30121818 - 30121783
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactac 44  Q
    |||||||||  |||||||||||||||||||||||||    
T  30121818 tatatatgcgatacatccaaaggtgaaaatcactac 30121783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 7e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 10543727 - 10543647
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcac 89  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||| |||||    
T  10543727 gtatatatgcgatacatccaaaggtgaaaatcactaccgtatacat-aggaatctcaaaccaccctcccaaaaaacactcac 10543647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 2530943 - 2531015
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaa 80  Q
    |||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||    
T  2530943 gtatatatacggtacatccaaaggtgaaaatcactactgtatacatgaggaacctcaaaccaccctctcaaaa 2531015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 14318443 - 14318506
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  14318443 tacatccaaaaatgaaaatcactaccgtatacatgaggaacctcaaaccaccctccaaaaaaac 14318506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 2024700 - 2024762
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||| |||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||    
T  2024700 tacacccaaagatgaaaatcactaccatatacatgaggatcctcaaaccatcctcccaaaaaa 2024762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 2412142 - 2412068
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  | |||||||| ||||||||||||||  ||||||||||||||||||| |||||||||| |||||    
T  2412142 gtatatatgcgatgcatccaaatgtgaaaatcactactgtatacatgaggaacctcaaaccaccctccctaaaaa 2412068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 11242376 - 11242438
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||| |||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  11242376 tacaaccaaagatggaaatcactaccgtatacatgaggaacctcaaaccaccctcccaaaaaa 11242438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 36868922 - 36868996
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||| ||||||||||||||| ||||||||||||| ||||| |||||||||| |||||    
T  36868922 gtatatatgtggtacacccaaatgtgaaaatcactaccgtatacatgaggaatctcaaaccaccctccccaaaaa 36868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 41911663 - 41911831
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa-acgctcacataacacttagtagtac 106  Q
    ||||||| || ||||| ||||| || |||||||||| | |||| ||||||||||||||  |||||| ||||||| || | ||| |||||||||| |||||    
T  41911663 gtatataagcggtacacccaaaagtaaaaatcactatcgtatatatgaggaacctcaaatcacccttccaaaaacacacccacctaacacttagcagtac 41911762  T
Q  107 tacttgactgtaannnnnnnnnnaggcccataccttggggtggtccagttccgttgagcggtttgcaca 175  Q
    || | |||| |||          |||||||| |||||||| |||||||||||  |||||||||||||||    
T  41911763 tattggactataatttttttatgaggcccatgccttggggaggtccagttccaatgagcggtttgcaca 41911831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 1366572 - 1366646
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| | ||| ||||||||||||||| |||| |||||||||||||  ||||||||||||||||    
T  1366572 gtatatatgcgatacacctaaatgtgaaaatcactaccgtatatatgaggaacctcataccaccctcccaaaaaa 1366646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 33037834 - 33037760
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  ||||| ||||||||||||| || |||| ||||||||||||||||||| ||||| ||| ||||||    
T  33037834 gtatatatgttgtacacccaaaggtgaaaaccattaccgtatacatgaggaacctcaaaccaccatccaaaaaaa 33037760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 9364345 - 9364292
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  9364345 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 9364292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 19523253 - 19523200
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| ||||||||||||||||||||||    
T  19523253 gtatatatgcggtacacccagaggtgaaaatgactaccatatacatgaggaacc 19523200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 27924136 - 27924084
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaac 60  Q
    |||||||||| |||||||||||||| ||||| |||||| ||||||||||||||    
T  27924136 gtatatatgcggtacatccaaaggtaaaaatgactaccgtatacatgaggaac 27924084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 34425931 - 34425883
Alignment:
Q  34 aaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  34425931 aaaatcattaccgtatacatgaggaacctcaaaccaccctcccaaaaaa 34425883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 24395793 - 24395727
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctc 74  Q
    |||||||| || |||||||||||||||||||||| ||| |||| ||||||||| | || ||||||||    
T  24395793 gtatatatacaatacatccaaaggtgaaaatcaccaccgtatagatgaggaactttaaaccaccctc 24395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 40794392 - 40794438
Alignment:
Q  27 aaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||    
T  40794392 aaaggtgaaaatcactaccgtatacatgagaaacctcaaaccaccct 40794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 2274944 - 2274891
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||||||||| ||| |||||||||| |||||| |||||| ||||||||    
T  2274944 gtatatatgcagtacacccagaggtgaaaatgactaccgtatacacgaggaacc 2274891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 16198840 - 16198893
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||||  |||| |||||||||||||| |||||| |||||||||||||||    
T  16198840 gtatatatgcgatacacccaaaggtgaaaatgactaccgtatacatgaggaacc 16198893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 16799373 - 16799426
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| | |||| |||||||||||||||    
T  16799373 gtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacc 16799426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 23284108 - 23284161
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||| ||||||| |||||| |||||||||||||||    
T  23284108 gtatatatgcggtacacccaaagatgaaaatgactaccgtatacatgaggaacc 23284161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 28822388 - 28822441
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||| |||||    
T  28822388 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgatgaacc 28822441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 34756412 - 34756465
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  34756412 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 34756465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 38869409 - 38869462
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||| ||||    
T  38869409 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgagaaacc 38869462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 40389582 - 40389635
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| |||||| |||  ||||||||||    
T  40389582 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatttatgaggaacc 40389635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 15480135 - 15480188
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| ||| |||||||||||    
T  15480135 gtatatatgcggtacacccagaggtgaaaatgactaccgtatgcatgaggaacc 15480188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27079065 - 27079012
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| | |||||||||||| |||||  |||||||||||||||    
T  27079065 gtatatatgcggtacacctaaaggtgaaaatgactactgtatacatgaggaacc 27079012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 22648782 - 22648857
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    |||||||||  | |||||||||||||| |||||||||  |||| || || |||||||| ||||| ||| |||||||    
T  22648782 gtatatatgtggcacatccaaaggtgacaatcactactgtataaataagaaacctcaaaccaccttccaaaaaaac 22648857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 24042 - 24141
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaacgctcacataacacttagtagtact 107  Q
    |||||||||| ||||| ||||| |||||||||| |||| ||| ||| ||||| ||||| |||||||||||||||||   ||| |||||||||||||||||    
T  24042 gtatatatgcggtacacccaaaagtgaaaatcattaccgtatgcataaggaatctcaaaccaccctcccaaaaaacatccacctaacacttagtagtact 24141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 230908 - 230983
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||||||||  || | ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  230908 gtatatatgcgatatacccaaaggtgaaaatcactaccttatacatgaggaacttcaaaccaccctcccaaaaaac 230983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 52468333 - 52468272
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaa 81  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||    
T  52468333 tacatccaaaggtgaaaatcactaccgtatgcatgaggaacctcaaaccaccttcccaaaaa 52468272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 40217291 - 40217217
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  ||||||||||| ||||||||| || |||||||||||| |||||||| ||||||| ||||||||    
T  40217291 gtatatatgcgatacatccaaagatgaaaatcattagcatatacatgagtaacctcaaaccacccttccaaaaaa 40217217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 4167939 - 4167996
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaa 65  Q
    ||||||||||  |||| ||||||||||||||||||||| |||||||||||||||||||    
T  4167939 gtatatatgcgatacacccaaaggtgaaaatcactaccttatacatgaggaacctcaa 4167996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 27112088 - 27112015
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||  |||| | ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  27112088 tatatatgcgatacaccaaaatgtgaaaatcactaccgtatacatgaggaacctcaaaccaccctcccagaaaa 27112015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 37744960 - 37745021
Alignment:
Q  10 atatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccacc 71  Q
    ||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  37744960 atatatgcgatacatccaaaggtgaaaatcactaccgtatacttgaggaacctcaaaccacc 37745021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 40089575 - 40089522
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||    
T  40089575 gtatatatgcggtacatccaaaggtgaaaatgactaccgtatacatgaggaacc 40089522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 36362919 - 36362984
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctc 74  Q
    ||||||||||| |||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||    
T  36362919 gtatatatgcaatacacccaaatgtggaaatcactaccatatacat-aggaacctcaaaccaccctc 36362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 45656233 - 45656159
Alignment:
Q  9 tatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    |||||||||  || ||||||| ||||||||||| | | ||||||||| ||||||||| |||||||||||||||||    
T  45656233 tatatatgcgataaatccaaatgtgaaaatcacgaacgtatacatgacgaacctcaaaccaccctcccaaaaaac 45656159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 2790789 - 2790842
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  2790789 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 2790842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 37777271 - 37777324
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  37777271 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 37777324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43455579 - 43455632
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  43455579 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 43455632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 54780836 - 54780783
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  54780836 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 54780783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 24396995 - 24396919
Alignment:
Q  6 cagtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||   ||||  |||||||||||||||||| | ||||||||||||||||||| | ||||||| ||||||    
T  24396995 cagtatatatgtgatacactcaaaggtgaaaatcactatcgtatacatgaggaacctcaaactaccctccaaaaaaa 24396919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 5128890 - 5128945
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctc 63  Q
    ||||||||||||| || ||| |||||||||| |||||| |||||||||||||||||    
T  5128890 gtatatatgcagtgcacccagaggtgaaaatgactaccgtatacatgaggaacctc 5128945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 51691988 - 51692039
Alignment:
Q  31 gtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||||||||||||||||||||| || ||||||||| ||||||||| ||||||    
T  51691988 gtgaaaatcactaccatatacacgatgaacctcaaaccaccctccgaaaaaa 51692039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 35779373 - 35779427
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacct 62  Q
    |||||||||| ||||| |||||||||||||| | |||| ||||||||||||||||    
T  35779373 gtatatatgcggtacacccaaaggtgaaaatgattaccgtatacatgaggaacct 35779427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 36178731 - 36178658
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| ||||| ||||||||||||||| ||||||||| ||| | ||| ||||||||||||||||    
T  36178731 gtatatatgcgatacacccaaatgtgaaaatcactaccttatacatgaagaatc-caaaccaccctcccaaaaaa 36178658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 16845080 - 16845027
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||||| |||||| |||| ||||||||| |||||| |||||||||||||||    
T  16845080 gtatatatgtagtacacccaacggtgaaaatgactaccgtatacatgaggaacc 16845027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 29425222 - 29425287
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    |||||||||||||||||  ||||||||||||  |||||||| ||| ||| |||||||| |||||||    
T  29425222 gtatatatgcagtacatttaaaggtgaaaattgctaccatacacacgagtaacctcaaaccaccct 29425287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 34027638 - 34027585
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||  |||||||||||||||    
T  34027638 gtatatatgcggtacacccaaaggtgaaaatgactacggtatacatgaggaacc 34027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 38209639 - 38209692
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| |||||| |||||||||||||||    
T  38209639 gtatatatgcggtacacccagaggtgaaaatgactaccgtatacatgaggaacc 38209692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 15735130 - 15735079
Alignment:
Q  32 tgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    ||||||||| |||| |||||||||||||| |||| ||||||||| |||||||    
T  15735130 tgaaaatcattaccgtatacatgaggaacttcaaaccaccctccaaaaaaac 15735079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 23509840 - 23509899
Alignment:
Q  2 ccaacagtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||||||||| ||||| | | |||||||||| |||||| || ||||||||||||    
T  23509840 ccaacagtatatatgcggtacacctagaggtgaaaatgactaccgtagacatgaggaacc 23509899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 19498560 - 19498510
Alignment:
Q  11 tatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||||| ||||| |||||||||||||| |||||  |||||||||||||||    
T  19498560 tatatgcggtacagccaaaggtgaaaatgactactgtatacatgaggaacc 19498510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 24969485 - 24969443
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    ||||| |||||||||||||| |||||| |||||||||||||||    
T  24969485 gtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 24969443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 39329452 - 39329514
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    |||| |||||| ||||||||  |||| |||||| ||||||| |||| ||||||||||||||||    
T  39329452 tacacccaaagatgaaaatccataccgtatacaggaggaacatcaaaccaccctcccaaaaaa 39329514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 1105591 - 1105538
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| | | |||||||||| ||||||||||||||||| ||||    
T  1105591 gtatatatgcggtacacctagaggtgaaaatgactaccatatacatgagcaacc 1105538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 2135369 - 2135426
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaa 65  Q
    ||||||||||  ||||||||||||| || ||||||| | |||| ||||||||||||||    
T  2135369 gtatatatgcgatacatccaaaggtaaacatcactatcgtatatatgaggaacctcaa 2135426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 10978959 - 10978906
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| | |||||||| |||||| |||||||||||||||    
T  10978959 gtatatatgcggtacacccagaagtgaaaatgactaccgtatacatgaggaacc 10978906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 32128643 - 32128598
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacat 53  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||    
T  32128643 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacat 32128598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 34768622 - 34768675
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||||||||| | |||| |||||||||||||||    
T  34768622 gtatatatgcggtacacccagaggtgaaaatgattaccgtatacatgaggaacc 34768675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 47129046 - 47128993
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| |||| ||||| |||||| |||||||||||||||    
T  47129046 gtatatatgcggtacacccagaggtaaaaatgactaccgtatacatgaggaacc 47128993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 54083290 - 54083343
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||| | ||||| |||||| |||||||||||||||    
T  54083290 gtatatatgcggtacacccaaagataaaaatgactaccgtatacatgaggaacc 54083343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 35465166 - 35465115
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaa 59  Q
    |||||||||| ||||| | ||| |||||||| |||||| |||||||||||||    
T  35465166 gtatatatgcggtacacctaaaagtgaaaataactaccgtatacatgaggaa 35465115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 36118530 - 36118581
Alignment:
Q  32 tgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    |||||||||||||| |||||||||| |||||| | ||||||| | |||||||    
T  36118530 tgaaaatcactaccgtatacatgagtaacctctaaccacccttcaaaaaaac 36118581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 16081 - 16016
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    |||| ||||| |||||||||||| |||||||||||||| |||||||||| |||||||| |||||||    
T  16081 gtatgtatgcggtacatccaaagatgaaaatcactaccgtatacatgagaaacctcaaaccaccct 16016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 206538 - 206595
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaa 65  Q
    |||||||||| ||||| |||| |||||||||||||||| |||||||||||||||||||    
T  206538 gtatatatgcggtacacccaatggtgaaaatcactaccgtatacatgaggaacctcaa 206595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 1408 - 1334
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| ||||| ||||||||||||| | ||||||||||||||||||| |||| || ||||||||    
T  1408 gtatatatgctatacacccaaatgtgaaaatcactatcgtatacatgaggaacctcaaaccacgcttccaaaaaa 1334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 173559 - 173633
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||||||||  |||| |||||||| |||||||||||| ||||| ||||||||||||| ||| ||||||| ||||    
T  173559 gtatatatgcgatacacccaaaggtaaaaatcactaccgtatacgtgaggaacctcaaaccatcctcccataaaa 173633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 106592 - 106539
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| |||||||||||||| |||||| |||||||||||||||    
T  106592 gtatatatgcggtacacccaaaggtgaaaatgactaccgtatacatgaggaacc 106539  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 38979 - 38914
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccct 73  Q
    ||||||||||  ||||  |||| ||||||||||||||| |||| |||||||||||||| |||||||    
T  38979 gtatatatgcgatacacacaaatgtgaaaatcactaccgtatatatgaggaacctcaaaccaccct 38914  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 181969 - 181920
Alignment:
Q  12 atatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||| ||||||||| |||||||||| |||||| |||||||||||||||    
T  181969 atatgcggtacatccagaggtgaaaatgactaccgtatacatgaggaacc 181920  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40128 - 40065
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||| || |||||||||||||| | | |||||||||| |||||||| ||||| ||||||||||    
T  40128 gtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaa 40065  T

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Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 138188 - 138125
Alignment:
Q  19 gtacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaa 82  Q
    ||||| || |||||||||||||| | | |||||||||| |||||||| ||||| ||||||||||    
T  138188 gtacaccctaaggtgaaaatcacaatcgtatacatgagcaacctcaaaccaccgtcccaaaaaa 138125  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 350269 - 350332
Alignment:
Q  20 tacatccaaaggtgaaaatcactaccatatacatgaggaacctcaagccaccctcccaaaaaac 83  Q
    |||||||||||||||||||| ||||   |||||||||| ||||||| ||||  |||||||||||    
T  350269 tacatccaaaggtgaaaatcgctactgaatacatgaggtacctcaaaccacaatcccaaaaaac 350332  T

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Target: scaffold0070 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 1397 - 1344
Alignment:
Q  8 gtatatatgcagtacatccaaaggtgaaaatcactaccatatacatgaggaacc 61  Q
    |||||||||| ||||| ||| || ||||||| |||||| |||||||||||||||    
T  1397 gtatatatgcggtacacccagagatgaaaatgactaccgtatacatgaggaacc 1344  T

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