View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654-Insertion-2 (Length: 1135)

Name: NF5654-Insertion-2
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654-Insertion-2
NF5654-Insertion-2
[»] chr8 (1 HSPs)
chr8 (37-1075)||(43867753-43868795)
[»] chr6 (1 HSPs)
chr6 (118-174)||(21188355-21188411)


Alignment Details
Target: chr8 (Bit Score: 944; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 944; E-Value: 0
Query Start/End: Original strand, 37 - 1075
Target Start/End: Complemental strand, 43868795 - 43867753
Alignment:
Q  37 tgaaaagttgaagtaccaataagttttgccatgaatcatcatcacaattgaacttaggagggtttgcagtagtccatggagaaggagaaccttgcctgct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868795 tgaaaagttgaagtaccaataagttttgccatgaatcatcatcacaattgaacttaggagggtttgcagtagtccatggagaaggagaaccttgcctgct 43868696  T
Q  137 ccattcagtaataacctcttcatagtttagtctcaaaaatctctctctctttgtttcttctttagtaataacactctcactataaccaacactactatta 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43868695 ccattcagtaataacctcttcatagtttagtctcaaaaatctctctctctttgtttcttctttagtaataacgctctcactataaccaacactactatta 43868596  T
Q  237 ctcaaaggcgtatactctttctcttgttgtgctagtgatacgtcattattatcaatattccaatgaaaaacatcatcacttgtcatgtcaaaaactgatt 336  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868595 ctcaaaggcatatactctttctcttgttgtgctagtgatacatcattattatcaatattccaatgaaaaacatcatcacttgtcatgtcaaaaactgatt 43868496  T
Q  337 ccaaatcatcaagttcttcatccttaacctttaacatttcatttttggatgcatccatttcattctcttgtttataatcaaacacttgtcctgatgaatt 436  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868495 ccaaatcatcaagttcttcatccttaacctttaacatttcacttttggatgcatccatttcattctcttgtttataatcaaacacttgtcctgatgaatt 43868396  T
Q  437 ctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactatccaagtcacac 536  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868395 ctcttgaatctcactactcccaacaccaagtaaactttcaacattagctgcaaattcagcaagatcaacatcaaactcacagaaactatccaagtcacac 43868296  T
Q  537 atttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaactgctcctcat 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868295 atttcctcaaaatcaacagcatcatttttcacagtacaagtctctaaatcaaaagggttggcatcgaaaactggcacacgacacagcaactgctcctcat 43868196  T
Q  637 cagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaagagaactttttc 736  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868195 cagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagtattgaagagaactttttc 43868096  T
Q  737 cttgagacgttgttgttgttgttgaatcgacgaattttcgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgcttgtgctgttgtt 836  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43868095 cttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgcttgtgctgttgtt 43867996  T
Q  837 gttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagggtgaaccaaattgtcacaaccatgacaaaggaaag 936  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43867995 gttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatgacaaaggaaag 43867896  T
Q  937 catcatctgcagcacaaaatcaacgtgctcttcttcttaaacagctatcacatgctc-tgctgtc-tggctcccaaggca-ctgcatctgcatca-cttt 1032  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||    
T  43867895 catcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatcaccttt 43867796  T
Q  1033 catgttctat-atcatagaattatactaaactatattgttttat 1075  Q
    |||| ||||| ||||||||||   ||||||||||||||||||||    
T  43867795 catg-tctataatcatagaatataactaaactatattgttttat 43867753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 21188355 - 21188411
Alignment:
Q  118 aaggagaaccttgcctgctccattcagtaataacctcttcatagtttagtctcaaaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21188355 aaggagaaccttgcctgctccattcagtaataacctcttcatagtttagtctcaaaa 21188411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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