View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654-Insertion-4 (Length: 737)

Name: NF5654-Insertion-4
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654-Insertion-4
NF5654-Insertion-4
[»] chr1 (28 HSPs)
chr1 (217-737)||(14350510-14351034)
chr1 (6-173)||(14350100-14350271)
chr1 (508-676)||(32058769-32058936)
chr1 (216-301)||(40261320-40261405)
chr1 (216-301)||(24876718-24876803)
chr1 (218-289)||(40052501-40052572)
chr1 (216-294)||(47037887-47037965)
chr1 (216-301)||(23526396-23526481)
chr1 (216-301)||(31003822-31003907)
chr1 (216-301)||(27143049-27143132)
chr1 (216-294)||(40783692-40783770)
chr1 (216-301)||(18396851-18396936)
chr1 (216-294)||(284497-284575)
chr1 (236-294)||(321790-321848)
chr1 (235-293)||(1837882-1837940)
chr1 (216-294)||(23045314-23045392)
chr1 (216-294)||(27210990-27211068)
chr1 (236-293)||(31061514-31061571)
chr1 (216-301)||(34458759-34458844)
chr1 (216-301)||(51064789-51064874)
chr1 (224-291)||(40562329-40562396)
chr1 (393-459)||(32058973-32059039)
chr1 (249-290)||(3657242-3657283)
chr1 (216-295)||(23166886-23166965)
chr1 (216-301)||(46771795-46771880)
chr1 (688-735)||(11814851-11814898)
chr1 (216-295)||(24771941-24772020)
chr1 (216-295)||(25929261-25929340)
[»] chr5 (22 HSPs)
chr5 (353-727)||(12156548-12156922)
chr5 (216-301)||(25683264-25683349)
chr5 (216-295)||(30402997-30403076)
chr5 (216-294)||(40886645-40886723)
chr5 (216-296)||(734374-734454)
chr5 (239-295)||(16054274-16054330)
chr5 (216-291)||(10285093-10285168)
chr5 (216-294)||(12806888-12806966)
chr5 (216-294)||(16983421-16983499)
chr5 (216-294)||(25773813-25773891)
chr5 (216-294)||(30720527-30720605)
chr5 (216-294)||(36561134-36561212)
chr5 (236-294)||(37900678-37900736)
chr5 (216-301)||(39071039-39071124)
chr5 (242-301)||(1056684-1056743)
chr5 (216-301)||(11795318-11795403)
chr5 (216-301)||(23097759-23097844)
chr5 (235-301)||(11797703-11797769)
chr5 (237-288)||(21638939-21638990)
chr5 (216-291)||(26168075-26168150)
chr5 (244-301)||(7277486-7277543)
chr5 (254-295)||(34201454-34201495)
[»] chr4 (29 HSPs)
chr4 (378-733)||(55728879-55729234)
chr4 (367-685)||(38093444-38093761)
chr4 (383-678)||(6410099-6410395)
chr4 (216-295)||(6128984-6129063)
chr4 (216-301)||(19692879-19692964)
chr4 (216-301)||(19703464-19703549)
chr4 (216-294)||(21310585-21310663)
chr4 (216-294)||(22321303-22321381)
chr4 (216-294)||(40122522-40122600)
chr4 (216-301)||(50768019-50768104)
chr4 (216-295)||(32543642-32543721)
chr4 (216-294)||(12071724-12071802)
chr4 (357-455)||(12485094-12485191)
chr4 (216-294)||(14261208-14261286)
chr4 (219-301)||(18507304-18507386)
chr4 (216-294)||(24706282-24706360)
chr4 (216-294)||(25704815-25704893)
chr4 (593-678)||(24957535-24957620)
chr4 (216-294)||(31892396-31892474)
chr4 (216-294)||(44569001-44569079)
chr4 (216-301)||(20249049-20249134)
chr4 (216-301)||(48652381-48652466)
chr4 (216-272)||(50839066-50839122)
chr4 (258-301)||(20714426-20714469)
chr4 (216-294)||(21661570-21661648)
chr4 (216-294)||(21670334-21670412)
chr4 (224-290)||(51777772-51777837)
chr4 (373-455)||(12468985-12469067)
chr4 (216-301)||(21064918-21065003)
[»] scaffold0044 (1 HSPs)
scaffold0044 (361-685)||(42427-42750)
[»] chr2 (19 HSPs)
chr2 (537-737)||(14950144-14950344)
chr2 (368-737)||(38530917-38531277)
chr2 (345-459)||(14950028-14950141)
chr2 (237-301)||(39561946-39562010)
chr2 (225-301)||(28110139-28110215)
chr2 (216-295)||(40756946-40757025)
chr2 (216-294)||(22388173-22388251)
chr2 (216-294)||(37673778-37673856)
chr2 (218-289)||(19976497-19976568)
chr2 (216-294)||(3519071-3519149)
chr2 (216-294)||(23366953-23367031)
chr2 (216-294)||(39938334-39938412)
chr2 (216-287)||(32838964-32839035)
chr2 (216-294)||(1102665-1102743)
chr2 (216-294)||(1646451-1646529)
chr2 (216-269)||(14779964-14780017)
chr2 (242-294)||(28401396-28401448)
chr2 (216-295)||(12969775-12969854)
chr2 (216-301)||(37284553-37284637)
[»] chr6 (16 HSPs)
chr6 (384-737)||(30845593-30845943)
chr6 (216-301)||(17942600-17942685)
chr6 (216-301)||(29260349-29260434)
chr6 (216-294)||(13757371-13757449)
chr6 (216-294)||(15064730-15064808)
chr6 (216-294)||(8626646-8626724)
chr6 (216-301)||(8235782-8235867)
chr6 (216-294)||(1605742-1605820)
chr6 (235-301)||(3798256-3798322)
chr6 (216-294)||(7761464-7761542)
chr6 (216-294)||(31559773-31559851)
chr6 (218-294)||(4129591-4129666)
chr6 (218-301)||(20398275-20398358)
chr6 (235-289)||(1814762-1814816)
chr6 (216-301)||(26860921-26861006)
chr6 (235-295)||(847830-847890)
[»] chr7 (13 HSPs)
chr7 (216-301)||(16662250-16662335)
chr7 (216-301)||(17636610-17636695)
chr7 (224-301)||(27941027-27941104)
chr7 (216-301)||(3091670-3091755)
chr7 (216-294)||(10981672-10981750)
chr7 (216-294)||(25614388-25614466)
chr7 (216-294)||(27813975-27814053)
chr7 (216-294)||(36453159-36453237)
chr7 (216-294)||(47110614-47110692)
chr7 (236-294)||(40349126-40349184)
chr7 (239-301)||(8380095-8380157)
chr7 (216-294)||(24456800-24456878)
chr7 (235-286)||(16360549-16360600)
[»] scaffold0025 (1 HSPs)
scaffold0025 (216-295)||(65200-65279)
[»] chr8 (24 HSPs)
chr8 (224-301)||(27563910-27563987)
chr8 (216-301)||(27035152-27035237)
chr8 (224-301)||(28568075-28568152)
chr8 (224-301)||(28575668-28575745)
chr8 (216-296)||(35866775-35866855)
chr8 (216-294)||(2539965-2540043)
chr8 (216-294)||(3585615-3585693)
chr8 (216-294)||(7147077-7147155)
chr8 (216-294)||(11174258-11174336)
chr8 (216-294)||(11646360-11646438)
chr8 (216-294)||(36068244-36068322)
chr8 (216-294)||(40058338-40058416)
chr8 (216-294)||(40918766-40918844)
chr8 (216-301)||(20546328-20546413)
chr8 (224-301)||(28562578-28562655)
chr8 (224-299)||(10180911-10180986)
chr8 (216-294)||(30999559-30999637)
chr8 (216-294)||(37345735-37345813)
chr8 (216-294)||(43275434-43275512)
chr8 (216-301)||(26628851-26628936)
chr8 (217-289)||(13880991-13881063)
chr8 (410-677)||(6444144-6444412)
chr8 (216-301)||(30906724-30906809)
chr8 (216-301)||(45400805-45400890)
[»] chr3 (26 HSPs)
chr3 (216-301)||(18355903-18355988)
chr3 (216-294)||(13703376-13703454)
chr3 (216-301)||(48436381-48436466)
chr3 (224-303)||(52805070-52805149)
chr3 (216-294)||(13365007-13365085)
chr3 (216-294)||(19241703-19241781)
chr3 (216-294)||(23087966-23088044)
chr3 (216-294)||(46694145-46694223)
chr3 (216-296)||(1455186-1455266)
chr3 (218-290)||(48820508-48820580)
chr3 (216-295)||(32835024-32835103)
chr3 (216-290)||(3383244-3383318)
chr3 (216-294)||(29375296-29375374)
chr3 (216-294)||(36881444-36881522)
chr3 (218-294)||(199019-199095)
chr3 (224-296)||(54086714-54086786)
chr3 (216-295)||(6901724-6901803)
chr3 (236-290)||(43750304-43750358)
chr3 (232-289)||(52009101-52009158)
chr3 (236-295)||(31873918-31873976)
chr3 (224-271)||(37293595-37293642)
chr3 (216-295)||(48963282-48963361)
chr3 (218-301)||(53559648-53559731)
chr3 (235-289)||(24064389-24064443)
chr3 (216-266)||(26783661-26783711)
chr3 (242-295)||(37781099-37781152)
[»] scaffold0939 (1 HSPs)
scaffold0939 (216-289)||(1110-1183)
[»] scaffold0168 (1 HSPs)
scaffold0168 (234-301)||(7825-7892)
[»] scaffold0157 (1 HSPs)
scaffold0157 (357-455)||(35286-35383)
[»] scaffold0056 (1 HSPs)
scaffold0056 (216-301)||(71240-71325)
[»] scaffold0076 (1 HSPs)
scaffold0076 (235-298)||(15377-15440)
[»] scaffold0343 (1 HSPs)
scaffold0343 (216-301)||(6936-7020)
[»] scaffold1770 (1 HSPs)
scaffold1770 (218-294)||(326-401)
[»] scaffold0062 (1 HSPs)
scaffold0062 (216-289)||(302-375)
[»] scaffold0004 (1 HSPs)
scaffold0004 (258-295)||(234352-234389)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 217 - 737
Target Start/End: Original strand, 14350510 - 14351034
Alignment:
Q  217 gaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataat---acccttacttattaacaaaatttgg 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||   ||||||||||||| |||||||||||    
T  14350510 gaataattttgttttatattacttgtcactttaaagtttcaatgcaacattaattaccagtttgtcaataattatacccttacttattgacaaaatttgg 14350609  T
Q  314 tttgttaaacctagcgcctcttttctctgccctctcttcacaagccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggt 413  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14350610 tttgttaaacctagcgcctcttttctctgccctcttttcacaagccaccgtcgtccaataatccaatcaatcttcttatgatgtagaggccgttattggt 14350709  T
Q  414 ggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatgttcctgtacggtggttttggcagtggttccgactatcgatctcttg 513  Q
    | |||||||| | ||||||||| ||| |||||||||||| ||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||    
T  14350710 gatgcgacgatcggcttaagcc-tccgcaccacctaccttcagatccgccgatggtcctgtacggtggttttggcggttgttccgactatcgatctcttg 14350808  T
Q  514 tggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagtttgtctttttggtatgcggtggttgatatcagatccg-- 611  Q
    ||||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |      
T  14350809 tggagtcgtgaaatgtatcacgactctgtttctctggccgttcaacatcgatggcttgagtttgtctttttggtatgcggtggttgatattagatctgtt 14350908  T
Q  612 ttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcacgtggtgatgtgtgtctgcatatgatctattatgg 711  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||    
T  14350909 ttttttttcttgacggtggatgtaggttttgctcgctcgcaatgtaggtggtgatagatcgatcacgtggtgatgtgtgtctgcgtatgatctattatgg 14351008  T
Q  712 ttttgatgaattttttgctgtgttgg 737  Q
    ||||||||||||||||| ||||||||    
T  14351009 ttttgatgaattttttgttgtgttgg 14351034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 14350100 - 14350271
Alignment:
Q  6 catagaggaccacttaatgttattttcttgtcctcacctgaattgagaagatttaggaactccgttgatgactaaaattaaaggggcgatgttagaatct 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||| ||||||||||    
T  14350100 catagaggaccacttaatgttattttcttgtcctcacctgaattgagaagatttaggaactccgttgatgacta-----aaaggggcgaagttagaatct 14350194  T
Q  106 cacatgaaacga---------tgataagtgacgctttaatccatattaatttttctcttcttcaatttttatcaatt 173  Q
    ||||||||||||         ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14350195 cacatgaaacgatgataacattgataagtgacgctttagtccatactaatttttctcttcttcaatttttatcaatt 14350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 508 - 676
Target Start/End: Complemental strand, 32058936 - 32058769
Alignment:
Q  508 ctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagtttgtctttttggtatgcggtggttgatatcaga 607  Q
    |||| ||||||| ||||| ||| |  || |||||||||| || || |||||||  ||| ||||||||||||||||| |||||| ||||||||||| ||||    
T  32058936 ctctggtggagttgtgaattgtgttacggctctgtttctctggccgttcaacactgattgcttgagtttgtctttt-ggtatgtggtggttgataccaga 32058838  T
Q  608 tccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtca 676  Q
    |||||||||| |||||||||||| || ||||| ||||||||| ||| |||||||||||| | |||||||    
T  32058837 tccgttttctctcttgacggtgggtgaaggttctgtttgctcgcaacgtaggtggtgataggtcggtca 32058769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 40261320 - 40261405
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  40261320 agaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataatacccttacatatt 40261405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 24876803 - 24876718
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| || |||||||||||||| |||| ||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  24876803 agaataattttgtttcattttacttgtcactttcaagtgtcaatgcgacattaattattggtttgtcaataatactcttacttatt 24876718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 40052501 - 40052572
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    ||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  40052501 aataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattggtttgtcaataata 40052572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 47037887 - 47037965
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  47037887 agaataattttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 47037965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 23526481 - 23526396
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  23526481 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttacatatt 23526396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 31003822 - 31003907
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | |||||||| |||||| ||||||||||||||||||||||  ||||||||| ||||||||||||| ||||    
T  31003822 agaataattttgtttcacattacttgccactttcaagtttcaatgcaacattaattgttggtttgtccataatacccttacctatt 31003907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 27143049 - 27143132
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | |||||||||||||   |||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  27143049 agaataattttgtttcacattacttgtcactc--aagtttcaatacaacattaattattggtttgtcaataatacccttacctatt 27143132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 40783692 - 40783770
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40783692 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 40783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 18396936 - 18396851
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||| || | |||||||||| ||||||||||||||||||||||| ||  || |||||||| ||||||||||||    
T  18396936 agaataattttgttttacataatttgtcactttcaagtttcaatgcaacattaattattgacttttcaataattcccttacttatt 18396851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 284575 - 284497
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  || ||||||||||||||    
T  284575 agaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttatcaataataccctt 284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 321848 - 321790
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  321848 tacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 235 - 293
Target Start/End: Original strand, 1837882 - 1837940
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccct 293  Q
    |||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||    
T  1837882 ttacttgtcacttttaagtttcaatgcaacattaattattgatttatcaataataccct 1837940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 23045314 - 23045392
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  23045314 agaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 23045392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 27210990 - 27211068
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||||| || ||||||||||||||||||||||| ||  |||||||||||||||||    
T  27210990 agaataattttgtttcacaatacttgtcacatttaagtttcaatgcaacattaattattgtcttgtcaataataccctt 27211068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 31061514 - 31061571
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccct 293  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||    
T  31061514 tacttgtcactctcaagtttcaatgcaacattaattattggtttgacaataataccct 31061571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 34458759 - 34458844
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||||||| ||||||| ||||||||||||||| ||||||  | ||||||||||||| ||||    
T  34458759 agaataattttgtttcactttacttgtcactttcaagtttcgatgcaacattaattattggtttaccgataatacccttacatatt 34458844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 51064789 - 51064874
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  ||| |||||||||| ||||||||||||||| ||||||| | |||| |||||||||||||||| ||||    
T  51064789 agaataattttgtttcactttatttgtcactttcaagtttcaatgcaacgttaattattagtttatcaataatacccttacctatt 51064874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 40562329 - 40562396
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacc 291  Q
    ||||||||| | ||||||||||||| ||||||||||||||||||||||| ||  |||||||| |||||    
T  40562329 tttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaatgatacc 40562396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 32059039 - 32058973
Alignment:
Q  393 gatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatc 459  Q
    ||||||||| |||||  |||||||||||| ||| |||| |||||||| |||||||||||||||||||    
T  32059039 gatgtagagtccgtttatggtggtgcgaccagcggcttgagccctccgcaccacctacctccagatc 32058973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 3657283 - 3657242
Alignment:
Q  249 aaagtttcaatgcaacattaattactggtttgtcaataatac 290  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  3657283 aaagtttcaatgcaacattaattattggtttgtcaataatac 3657242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 23166886 - 23166965
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| | |||| || | ||||| |||||||||| |||||||||||| || |||||||||||||| ||||    
T  23166886 agaataattttgtttcacattatttattactttcaagtttcaatacaacattaattattgatttgtcaataatactctta 23166965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 46771880 - 46771795
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||| ||||||| ||||||||||| ||||||||||| |   ||||||||||||| ||||| ||||    
T  46771880 agaataattttgtttcacaatacttatcactttcaagtttcaatgtaacattaattattttcttgtcaataatactcttacatatt 46771795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 735
Target Start/End: Complemental strand, 11814898 - 11814851
Alignment:
Q  688 gtgtctgcatatgatctattatggttttgatgaattttttgctgtgtt 735  Q
    ||||||||||||||||| |||||||||||||||| |||| | ||||||    
T  11814898 gtgtctgcatatgatctgttatggttttgatgaaattttggttgtgtt 11814851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 24771941 - 24772020
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| | | ||| |||| |||| |||||||||||||| |||||||| || ||| ||||||||| |||||    
T  24771941 agaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattgttttttcaataatagcctta 24772020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 25929340 - 25929261
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| || | ||||| | |||| ||||||||| |||||||||| || || ||| |||||||||||||||    
T  25929340 agaataattttgtttcatttcacttgcccctttcaagtttcaacgcaacattaaatattgatttatcaataataccctta 25929261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 307; Significance: 1e-172; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 353 - 727
Target Start/End: Complemental strand, 12156922 - 12156548
Alignment:
Q  353 acaagccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  12156922 acaagccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcggcttaagccttccgcaccacctacct 12156823  T
Q  453 ccagatccgctgatgttcctgtacggtggttttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgccc 552  Q
    |||||||||| |||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  12156822 ccagatccgccgatggttctatacggtggttttggcggtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctctggcc 12156723  T
Q  553 attcaacatcgatggcttgagtttgtctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcaca 652  Q
     ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||    
T  12156722 gttcaacaccgatggcttgagtttgtctttttggtatgcggtggttgatatcagatctgttttctttcttgacggtggatgtaggttttgtttgcttgca 12156623  T
Q  653 atgtaggtggtgatggatcggtcacgtggtgatgtgtgtctgcatatgatctattatggttttgatgaatttttt 727  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12156622 atgtaggtggtgatggatcagtcacgtggtgatgtgtgtctgcatatgatctattatggttttgatgattttttt 12156548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 25683264 - 25683349
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |||  |||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  25683264 agaataattttgtttcataaaacttgtcactttcaagtttcaatgcaacattaattattgttttgtcaataatacccttacatatt 25683349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 30402997 - 30403076
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||| ||| || |||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||||    
T  30402997 agaataattttatttcattttacttgtcacttttaagtttcaatacaaaattaattattggtttgtcaataataccctta 30403076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 40886645 - 40886723
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40886645 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 40886723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 734374 - 734454
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttac 296  Q
    ||||||| ||||||| |  |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||| |||||    
T  734374 agaataattttgtttcactttacttgtcactttcaagtttcaatacaacattaattattggtttatcaataatactcttac 734454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 16054330 - 16054274
Alignment:
Q  239 ttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  16054330 ttgtcactttcaagtttcaatgcaacattaattattagtttgtcaataataccctta 16054274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 10285093 - 10285168
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacc 291  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  10285093 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatacc 10285168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 12806888 - 12806966
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  12806888 agaataattttgtttcacaatacttgtctctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 12806966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 16983499 - 16983421
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  || ||||||||||||||    
T  16983499 agaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtcttttcaataataccctt 16983421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 25773891 - 25773813
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||| ||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  25773891 agaataagtttgtttcacaatacttatcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 25773813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 30720527 - 30720605
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||| ||| ||  |||||||||||||||||    
T  30720527 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattagttattgtcttgtcaataataccctt 30720605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 36561134 - 36561212
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| |||||||||||||||||||| || ||  |||||||||||||||||    
T  36561134 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaagtattgtcttgtcaataataccctt 36561212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 37900678 - 37900736
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  37900678 tacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 37900736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 39071124 - 39071039
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||||||| |||| |||||||||||||||||| |||||| |||||||| | ||||| ||||    
T  39071124 agaataattttgtttcactttacttgtcacttttaagtatcaatgcaacattaattattggtttatcaataatccacttacctatt 39071039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 1056684 - 1056743
Alignment:
Q  242 tcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||||||| |||| |||||    
T  1056684 tcactttcaagtttcaatgcaacattaattattagtttgtcaataatactcttatttatt 1056743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 11795318 - 11795403
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  ||| || ||||||| |||||||||||||||||||||||  ||||| |||||||||| ||||| ||||    
T  11795318 agaataattttgtttcactttatttatcactttcaagtttcaatgcaacattaattataggtttatcaataatactcttacctatt 11795403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 23097759 - 23097844
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||| ||||| | |||||||||||| |||||||| ||  ||||||||||||||||||| ||||    
T  23097759 agaataattttgtttcacaatacttgttactttcatgtttcaatgcaatattaattattgtcttgtcaataatacccttacatatt 23097844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 11797769 - 11797703
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||||||||| ||| || ||||||| |||||||||||| | |||||||||| |||||||| ||||||    
T  11797769 ttacttgtcattttcaaatttcaatacaacattaattattagtttgtcaatgatacccttgcttatt 11797703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 21638990 - 21638939
Alignment:
Q  237 acttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataat 288  Q
    ||||||||| || |||||| ||||||||||||| || |||||||||||||||    
T  21638990 acttgtcacatttaagtttaaatgcaacattaaatattggtttgtcaataat 21638939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 26168150 - 26168075
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacc 291  Q
    ||||||| ||||||| |  ||| |||||||||| |||||||||||||| |||||| | | |||||| |||||||||    
T  26168150 agaataattttgtttcactttaattgtcactttcaagtttcaatgcaagattaatgatttgtttgttaataatacc 26168075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 7277486 - 7277543
Alignment:
Q  244 actttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||| || ||||||||||| |||||||| ||  ||||||||||| ||||||||||||    
T  7277486 acttttaaatttcaatgcaaaattaattattgtcttgtcaataatgcccttacttatt 7277543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 34201454 - 34201495
Alignment:
Q  254 ttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  34201454 ttcaatgcaatattaactactgttttgtcaataataccctta 34201495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 378 - 733
Target Start/End: Complemental strand, 55729234 - 55728879
Alignment:
Q  378 aatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatgttcctgtacg 477  Q
    |||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  || |||| || ||||||    
T  55729234 aatcaatcttgtttccatgtagaggccgttattggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatatgccgatggtcttgtacg 55729135  T
Q  478 gtggttttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagtttg 577  Q
    ||| ||||||| |||||||| |   ||||||||||||||||||||||||||| | ||| |||| ||||| ||    ||||||| ||||||||||||||||    
T  55729134 gtgattttggcggtggttccaaaggtcgatctcttgtggagtcgtgaaatgtgttgcggctctatttctctgatagttcaacaccgatggcttgagtttg 55729035  T
Q  578 tctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcac 677  Q
    |||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  55729034 tcttttcggtatgcgatggttgatattagatccgctttctttcttgacggtggatgtaggttttgtttgctcgcaacgtaggtggtgatagatcggtcac 55728935  T
Q  678 gtggtgatgtgtgtctgcatatgatctattatggttttgatgaattttttgctgtg 733  Q
    |||||||| |||||||||||||||| | ||||| ||||||||||||||||| ||||    
T  55728934 gtggtgatatgtgtctgcatatgatttgttatgattttgatgaattttttgatgtg 55728879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 367 - 685
Target Start/End: Complemental strand, 38093761 - 38093444
Alignment:
Q  367 tccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgat 466  Q
    ||||||||||||||| |||||||||| ||||||| ||||||  |||||||||||||||| ||||||||||||  ||||||||||||||||||| || |||    
T  38093761 tccaataatccaatctatcttcttaccatgtagaagccgtttatggtggtgcgacgagcggcttaagccctctgcaccacctacctccagatctgccgat 38093662  T
Q  467 gttcctgtacggtggttttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatg 566  Q
    | || ||||| ||||||||||| |||||| || |  |||| |||||||||||||||||||||| | | || |||| ||||  | || ||||||| |||||    
T  38093661 ggtcttgtacagtggttttggcggtggtttcggcagtcgacctcttgtggagtcgtgaaatgtgttg-gagtctggttctccggccgttcaacaccgatg 38093563  T
Q  567 gcttgagtttgtctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgat 666  Q
     |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||  |||||    
T  38093562 acttgtgtttgtctttttggtatgtggtggttgatatcagatccgttttctttcttggcggtggatgtaggttttgtttgctcgcaacgtgggcagtgat 38093463  T
Q  667 ggatcggtcacgtggtgat 685  Q
    |||||||||||||||||||    
T  38093462 ggatcggtcacgtggtgat 38093444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 383 - 678
Target Start/End: Complemental strand, 6410395 - 6410099
Alignment:
Q  383 atcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatgttcctgtacggtggt 482  Q
    ||||||||| |||||||| | ||||  |||||||||||||||| ||||  ||||||| || |||||||||||| ||  | ||||| ||||| |||| |||    
T  6410395 atcttcttaagatgtagacgtcgtttatggtggtgcgacgagcggcttgtgccctccgcatcacctacctccaaatatgttgatggtcctgcacggcggt 6410296  T
Q  483 tttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagttt--gtct 580  Q
    |||||| ||||||||  |  |||| ||||||||| |||||||| ||| | ||  |||||||||| || || ||||||   |||||| ||| |||  |||     
T  6410295 tttggcggtggttccagcggtcgacctcttgtggggtcgtgaattgtgttgcagctctgtttctctggccgttcaactctgatggcctgatttttcgtc- 6410197  T
Q  581 ttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcacg 678  Q
    ||||| |  | ||||| |||||  |||| |  ||||| |||||  |||||||| ||||| ||||||||| |||  |||||||||||||||||||||||    
T  6410196 ttttgttgcgtggtggctgatacaagattcaatttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacg 6410099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 6128984 - 6129063
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  6128984 agaataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataataccctta 6129063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 19692964 - 19692879
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  19692964 agaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataacacccttacttatt 19692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 19703549 - 19703464
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  19703549 agaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaataacacccttacttatt 19703464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 21310663 - 21310585
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  21310663 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 21310585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 22321303 - 22321381
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  22321303 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 22321381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 40122522 - 40122600
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40122522 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 40122600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 50768104 - 50768019
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | || |||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  50768104 agaataattttgtttcacaatatttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttacatatt 50768019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 32543721 - 32543642
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| || |||||||| ||||| |||||| ||||| |||||||||| |||||||||| |||||||||||    
T  32543721 agaataattttgtttcattttacttgttactttcaagttttaatgcgacattaattattggtttgtcattaataccctta 32543642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 12071802 - 12071724
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||  ||  |||||||||||||||||    
T  12071802 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattcttgtcttgtcaataataccctt 12071724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 357 - 455
Target Start/End: Original strand, 12485094 - 12485191
Alignment:
Q  357 gccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctcca 455  Q
    ||||||||| ||||| |||||||| |||||||||| ||| | || | ||||  ||||||||||||||||||||| |||||||  |||||||||||||||    
T  12485094 gccaccgccatccaa-aatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctcca 12485191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 14261286 - 14261208
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  14261286 agaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 14261208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 18507304 - 18507386
Alignment:
Q  219 ataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||| ||||||| | ||| ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||  ||||||||||    
T  18507304 ataattttgtttcacatttcttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatattcttacttatt 18507386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 24706282 - 24706360
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  24706282 agaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 24706360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 25704893 - 25704815
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| |||||||| |||||||||||||| ||  |||||||||||||||||    
T  25704893 agaataattttgtttcacaatacttgtcactttcaagtttcagtgcaacattaattattgtcttgtcaataataccctt 25704815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 678
Target Start/End: Original strand, 24957535 - 24957620
Alignment:
Q  593 gtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcacg 678  Q
    ||||||||||||||||  |||||||||||||  ||||| || ||||| ||||||||| |||  |||||||||||| ||||||||||    
T  24957535 gtggttgatatcagatttgttttctttcttggaggtgggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtcacg 24957620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 31892474 - 31892396
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||||| | ||||||||||||| |||||| |||| ||||||||||| ||  |||||||||||| ||||    
T  31892474 agaataattttgttttacaatacttgtcacttttaagttttaatgtaacattaattattgtcttgtcaataatagcctt 31892396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 44569079 - 44569001
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| | ||||||||||||||||||||| ||  |||||||||||||||||    
T  44569079 agaataattttgtttcacaatacttgtccctttcatgtttcaatgcaacattaattattgtcttgtcaataataccctt 44569001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 20249049 - 20249134
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||| |||| |||| |||||||||||||| |||||||| ||  ||||||||||||||||||| ||||    
T  20249049 agaataattttgtttcacaatacctgtctctttcaagtttcaatgcaatattaattattgtcttgtcaataatacccttacatatt 20249134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 48652466 - 48652381
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||| |||||||||||| ||||| |||||||||| || ||| | |||||||||||||| ||||    
T  48652466 agaataattttgtttcactttacttgttactttaaagttttaatgcgacattaattattgatttattaataatacccttacctatt 48652381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 50839066 - 50839122
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaatta 272  Q
    ||||||| ||||||| | ||||||||||| ||| |||||||||||||||||||||||    
T  50839066 agaataattttgtttcacattacttgtcattttcaagtttcaatgcaacattaatta 50839122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 258 - 301
Target Start/End: Original strand, 20714426 - 20714469
Alignment:
Q  258 atgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  20714426 atgcaacattaattattggtttgtcaataatacccttatttatt 20714469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 21661570 - 21661648
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | || || ||||||| |||||||||||||||||||| || ||  |||||||||||||||||    
T  21661570 agaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtcaataataccctt 21661648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 21670334 - 21670412
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | || || ||||||| |||||||||||||||||||| || ||  |||||||||||||||||    
T  21670334 agaataattttgtttcacaatatttatcactttcaagtttcaatgcaacattaagtattgtcttgtcaataataccctt 21670412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 51777837 - 51777772
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatac 290  Q
    |||||||||  |||||||||||||| |||||  | |||||||||||||| |||||||||||||||||    
T  51777837 tttgttttactttacttgtcacttttaagtta-agtgcaacattaattattggtttgtcaataatac 51777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 373 - 455
Target Start/End: Original strand, 12468985 - 12469067
Alignment:
Q  373 aatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctcca 455  Q
    ||||||||  ||||||||| |||||| | | ||||  ||||||||||| ||||| ||| |||||||  |||||||||||||||    
T  12468985 aatccaatacatcttcttaagatgtaaacgtcgtttatggtggtgcgatgagcatcttgagccctctgcaccacctacctcca 12469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 21065003 - 21064918
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||| || |||| || |||||||||||||||||||| ||  ||| ||||||||| ||||| ||||    
T  21065003 agaataattttgtttcacaatacttatcgctttcaaatttcaatgcaacattaattattgtcttgacaataatactcttacatatt 21064918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 153; Significance: 1e-80; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 361 - 685
Target Start/End: Original strand, 42427 - 42750
Alignment:
Q  361 ccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatcc 460  Q
    |||||| |||||||||||||| ||||||||||||||||||||  |||  |||||||||||||||| ||||||||||||| |||||||||||||||||||     
T  42427 ccgccgcccaataatccaatctatcttcttacgatgtagaggttgtttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatct 42526  T
Q  461 gctgatgttcctgtacggtggttttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaaca 560  Q
    || |||| || ||||| ||||||||||| |||||| ||    |||| |||||||||||||||||||||| | |||| | || ||||  | ||||||||||    
T  42527 gccgatggtcttgtacagtggttttggcggtggtttcggaagtcgacctcttgtggagtcgtgaaatgtgttgcgagtatggttctccggccattcaaca 42626  T
Q  561 tcgatggcttgagtttgtctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggt 660  Q
     ||||| |||| |||||||||||||||||   ||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||  | |||    
T  42627 gcgatgacttgtgtttgtctttttggtatatcgtggttgatatcagatccgttttctttcttggccgtggatgtaggtttagtttgctcccaa-ctgggt 42725  T
Q  661 ggtgatggatcggtcacgtggtgat 685  Q
     ||||||||||||||||||||||||    
T  42726 agtgatggatcggtcacgtggtgat 42750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 3e-78; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 537 - 737
Target Start/End: Original strand, 14950144 - 14950344
Alignment:
Q  537 ctctgtttctttgcccattcaacatcgatggcttgagtttgtctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtag 636  Q
    |||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14950144 ctctgtttctatggccattcaacaccgatggcttgagtttgtctttttggtatgcggtggttgataccagatccgttttctttcttgacggtggatgtag 14950243  T
Q  637 gttttgtttgctcacaatgtaggtggtgatggatcggtcacgtggtgatgtgtgtctgcatatgatctattatggttttgatgaattttttgctgtgttg 736  Q
    ||||||||||||  | | ||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||| |||||||    
T  14950244 gttttgtttgcttgcgacgtaggtggtgatggatcggtcacgtggtgatctgtatctgcatattatctgttatggttttgatgaattttttgttgtgttg 14950343  T
Q  737 g 737  Q
    |    
T  14950344 g 14950344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 368 - 737
Target Start/End: Original strand, 38530917 - 38531277
Alignment:
Q  368 ccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatg 467  Q
    |||||||| ||||| ||||||||| |||||||||| ||||  |||||||||||||||| |||| |||||||| |||||||||| |||||||  |  ||||    
T  38530917 ccaataattcaatctatcttcttaagatgtagaggtcgtttatggtggtgcgacgagcggcttgagccctccgcaccacctacttccagatatgtcgatg 38531016  T
Q  468 ttcctgtacggtggttttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatgg 567  Q
     ||||||||| ||  |||||| ||            ||| |||||||||||||||||||| | | ||   | ||||||| || |  ||||||| ||||||    
T  38531017 gtcctgtacgatgaatttggcggt------------cgacctcttgtggagtcgtgaaatatgttgcagttttgtttctctgtcg-ttcaacaccgatgg 38531103  T
Q  568 cttgagtttgtctttttggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatg 667  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||  |||||||| |||||||||||| || |||  || |||||||||    
T  38531104 cttgagtttgtctttttggtatgtggtggttgataccagatctgttttctttcttggtggtggatggaggttttgtttgttcgcaacatatgtggtgatg 38531203  T
Q  668 gatcggtcac----gtggtgatgtgtgtctgcatatgatctattatggttttgatgaattttttgctgtgttgg 737  Q
    ||||||| ||    |||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  38531204 gatcggttacgaaagtggtgatctgtgtctgcatatgatctgttatggttttgatggattttttgttgtgttgg 38531277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 345 - 459
Target Start/End: Original strand, 14950028 - 14950141
Alignment:
Q  345 ctctcttcacaagccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacacc 444  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||| | ||||||| | | ||||    
T  14950028 ctctcttcacaagctaccgccgtccaataattcaatcaatcttcttaagatgtagaggcagttattggtggtgcgacaagcggattaagccat-cgcacc 14950126  T
Q  445 acctacctccagatc 459  Q
    |||||||||||||||    
T  14950127 acctacctccagatc 14950141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 39561946 - 39562010
Alignment:
Q  237 acttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39561946 acttgtcacttttaaatttcaatgcaacattaattattggtttgtcaataatacccttacttatt 39562010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 28110139 - 28110215
Alignment:
Q  225 ttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||||| | ||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  28110139 ttgtttcacattacttgtcattttcaagtttcaatgcaacattaattattggtttatcaataatacccttacatatt 28110215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 40756946 - 40757025
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| |  ||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  40756946 agaataattttgtttcactttagttgtcactttcaagtttcaatgcaacattaattattggtttatcaataataccctta 40757025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 22388173 - 22388251
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  22388173 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 22388251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 37673778 - 37673856
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||||||||||| | | ||||||||||||  ||||||||||||||||||||||| ||  |||||||||||||||||    
T  37673778 agaataactttgtttcaaaatacttgtcacttccaagtttcaatgcaacattaattattgtcttgtcaataataccctt 37673856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 19976568 - 19976497
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    ||||| ||||||| || |||||||||||||| ||||||||||||||||||||||| | |||| |||||||||    
T  19976568 aataattttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattagtttatcaataata 19976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 3519149 - 3519071
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||| ||||||||||| ||  |||||||||||||||||    
T  3519149 agaataattttgtttcacaatacttgtcactttcaagtttcaatgtaacattaattattgtcttgtcaataataccctt 3519071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 23367031 - 23366953
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| |||||||||| |||||||||||| ||  |||||||||||||||||    
T  23367031 agaataattttgtttcacaatacttgtcactttcaagtttcaatacaacattaattattgtcttgtcaataataccctt 23366953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 39938412 - 39938334
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| |||||| |||||||||||||||| ||  |||||||||||||||||    
T  39938412 agaataattttgtttcacaatacttgtcacttttaagttttaatgcaacattaattattgtcttgtcaataataccctt 39938334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 32838964 - 32839035
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataa 287  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||||| |||||||| | |||| |||||||    
T  32838964 agaataattttgtttcattttacttgtcactttcaagtttcaatgcaatattaattatttgtttatcaataa 32839035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 1102743 - 1102665
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||| |||||||| ||||||||||||||||||||||| ||  |||||||||| ||||||    
T  1102743 agaataattttgtttcacaatactcgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataacaccctt 1102665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 1646529 - 1646451
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||| ||||||| |||||||||||||||||||| || |   |||||||||||||||||    
T  1646529 agaataattttgtttcacaatacttatcactttcaagtttcaatgcaacattaagtattatcttgtcaataataccctt 1646451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 14780017 - 14779964
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaa 269  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||||| |||||    
T  14780017 agaataattttgtttcattttacttgtcactttcaagtttcaatgcaagattaa 14779964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 28401396 - 28401448
Alignment:
Q  242 tcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||||| || |||||||||| || ||||||||||||||||||    
T  28401396 tcactttcaagtttcaaggccacattaattattgatttgtcaataataccctt 28401448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 12969775 - 12969854
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| | | ||| |||| |||| |||||||||||||| |||||||| ||  || |||||||||||||||    
T  12969775 agaataattttgtttcacaatacatgtctctttcaagtttcaatgcaatattaattattgtcttctcaataataccctta 12969854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 37284553 - 37284637
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||| ||| |||||||||||||||||| |||| || ||| ||| |||||| ||||| ||||    
T  37284553 agaataattttgtttcactttacttgtcattttcaagtttcaatgcaacatt-attattgatttatcactaatactcttacctatt 37284637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 384 - 737
Target Start/End: Complemental strand, 30845943 - 30845593
Alignment:
Q  384 tcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatgttcctgtacggtggtt 483  Q
    |||||||| |||||||||||||||  |||||||||||||||| |||| | |||||| ||||||||||||||||||  || |||| ||||||||   ||||    
T  30845943 tcttcttaagatgtagaggccgtttatggtggtgcgacgagcggcttgaaccctccgcaccacctacctccagatttgccgatggtcctgtacaacggtt 30845844  T
Q  484 ttggcagtggttccgactatcgatctcttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagtttgtctttt 583  Q
    ||||  |||||||||||  |||| |||||||||||||||||| ||| |   | |||| ||||| |   ||||| |||| ||||||||||| |||||||||    
T  30845843 ttggtggtggttccgacagtcgacctcttgtggagtcgtgaattgtgttatggctctatttctcttgtcattcgacattgatggcttgagattgtctttt 30845744  T
Q  584 tggtatgcggtggttgatatcagatccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcac-gtggt 682  Q
    ||||||| ||||||||||| || ||  ||||||| ||||| ||||||||| ||||||||||| ||| |||  ||||||  ||||||||||||||    ||    
T  30845743 tggtatggggtggttgataacatatatgttttctctcttggcggtggatgaaggttttgttttctcgcaacataggtgcagatggatcggtcacaaaagt 30845644  T
Q  683 gatgtgtgtctgcatatgatctattatggttttgatgaattttttgctgtgttgg 737  Q
    |    |||| |||||||||||| ||||||||||||||||||||| | ||||||||    
T  30845643 g----gtgtatgcatatgatctgttatggttttgatgaatttttggttgtgttgg 30845593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 17942685 - 17942600
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  17942685 agaataattttgttttataatacttgtcactttcaagtttcaatgcaacattaattattgttttgtcaataatacccttacatatt 17942600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 29260434 - 29260349
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  29260434 agaataattttgtttcaaaatacttgtcattttcaagtttcaatgcaacattaattactgtcttgtcaataatacccttacatatt 29260349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 13757449 - 13757371
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  13757449 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 13757371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 15064730 - 15064808
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| ||| ||||||||||||| |||||||||| |||||||||||| ||  |||||||||||||||||    
T  15064730 agaataattttgtttcataatacttgtcactttcaagtttcaatacaacattaattattgtcttgtcaataataccctt 15064808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 8626724 - 8626646
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  8626724 agaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 8626646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 8235867 - 8235782
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||||||||| |||||||||||||| |||||||| ||  || |||||||||||||||| ||||    
T  8235867 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaatattaattattgtcttatcaataatacccttacatatt 8235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 1605820 - 1605742
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| || ||||||| |||||||||||| ||  |||||||||||||||||    
T  1605820 agaataattttgtttcacaatacttgtcactttcaaatttcaatacaacattaattattgtcttgtcaataataccctt 1605742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 3798322 - 3798256
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||||||||||||| |||||| ||||||||||||||||   |||| |||||||||||||||| ||||    
T  3798322 ttacttgtcactttcaagttttaatgcaacattaattatgagtttatcaataatacccttacctatt 3798256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 7761542 - 7761464
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | || |||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||    
T  7761542 agaataattttgtttcacaatatttgtcactttcaagtttcaatgcaatattaattattattttgtcaataataccctt 7761464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 31559773 - 31559851
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||| ||||| | ||||||| ||||| ||||||||||||||||||||||| ||  |||| ||||||||||||    
T  31559773 agaataattttattttacaatacttgttactttcaagtttcaatgcaacattaattattgtcttgttaataataccctt 31559851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 4129666 - 4129591
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||| ||||||| | | ||||||||||||| |||||||||||||||||||| || ||  |||||||||||||||||    
T  4129666 aataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttgtcaataataccctt 4129591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 20398275 - 20398358
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||| ||||||| |  ||||||| |||||| |||||| |||||||||||||||| |   ||||||||||||||||||| ||||    
T  20398275 aataattttgtttcactttacttgccactttcaagttttaatgcaacattaattattaaattgtcaataatacccttacctatt 20398358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 1814816 - 1814762
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    |||||||||||||| || || |||||||||||| |||| ||||||||||||||||    
T  1814816 ttacttgtcacttttaatttccaatgcaacattgattattggtttgtcaataata 1814762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 26861006 - 26860921
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||| ||| | |||||||| ||||||| |||| || ||||||||||||||| |||| ||||    
T  26861006 agaataagtttgtttcactttacttgtcattttcatgtttcaatacaacattgattattgatttgtcaataatacctttacctatt 26860921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 847830 - 847890
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    |||||||||| ||| ||  ||||||||||||||||||| || |||||||||||||| ||||    
T  847830 ttacttgtcattttcaaagttcaatgcaacattaattattgctttgtcaataatactctta 847890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 16662335 - 16662250
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||| ||||    
T  16662335 agaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttgtcattaatacccttacctatt 16662250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 17636695 - 17636610
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||||| ||||    
T  17636695 agaataattttgttttaaattacttgtcactttcaagtttcaatgcaacattaattattgatttgtcattaatacccttacctatt 17636610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 27941027 - 27941104
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| | ||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  27941027 tttgtttcacattacttgtcactttcaagtttcattgcaacattaattattggcttgtcaataatacccttacttatt 27941104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 3091755 - 3091670
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  3091755 agaataattttgtttcactttacttgtcatttttaagtttcaatgcaacattaaatattggtttgtcaataatacccttacatatt 3091670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 10981750 - 10981672
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  10981750 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 10981672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 25614388 - 25614466
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  25614388 agaataattttgtttcacaatacttgtcacttttaagtttcaatgcaacattaattattgtcttgtcaataataccctt 25614466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 27814053 - 27813975
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  27814053 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtgttgtcaataataccctt 27813975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 36453159 - 36453237
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  36453159 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 36453237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 47110692 - 47110614
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  47110692 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 47110614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 40349184 - 40349126
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||    
T  40349184 tacttgtcacttttaagtttcaatgcaacattaattattgtttggtcaataataccctt 40349126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 8380157 - 8380095
Alignment:
Q  239 ttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    |||||||||| |||||||||| |||||||| ||| |||||||| || ||||||||||||||||    
T  8380157 ttgtcacttttaagtttcaatacaacattagttattggtttgttaaaaatacccttacttatt 8380095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 24456800 - 24456878
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| |  |||||||||||| | |||||||||||||||||||| ||||  ||| ||||||||||||||    
T  24456800 agaataattttgtttaactttacttgtcactctcaagtttcaatgcaacattaactactaatttatcaataataccctt 24456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 16360600 - 16360549
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaata 286  Q
    |||||||||||||| |||||||||| ||||||||| || |||||||||||||    
T  16360600 ttacttgtcactttcaagtttcaatacaacattaaatattggtttgtcaata 16360549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 65200 - 65279
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||    
T  65200 agaataattttgtttcatattacttgtcacttttaaatttcaatgcaatattaattattggtttgtcaataataccctta 65279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 27563910 - 27563987
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  27563910 tttgtttcatattacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataatacccttacctatt 27563987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 27035237 - 27035152
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  27035237 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatacccttacatatt 27035152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 28568152 - 28568075
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||| ||||    
T  28568152 tttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggtttatcaatattacccttacctatt 28568075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 28575745 - 28575668
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||||| ||||    
T  28575745 tttgtttcattttacttgtcactttgaagtttcaatgcaacattaattattggtttatcaatattacccttacctatt 28575668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 35866855 - 35866775
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttac 296  Q
    ||||||| ||||||| || |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||| |||||    
T  35866855 agaataattttgtttcattttacttgtcactttcaagtttcaattcaacattaattattggtttatcaataatactcttac 35866775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 2539965 - 2540043
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  2539965 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 2540043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 3585693 - 3585615
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  3585693 agaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataataccctt 3585615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 7147155 - 7147077
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  7147155 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 7147077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 11174258 - 11174336
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  11174258 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 11174336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 11646360 - 11646438
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  11646360 agaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataataccctt 11646438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 36068322 - 36068244
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  36068322 agaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgacttgtcaataataccctt 36068244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 40058338 - 40058416
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40058338 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 40058416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 40918766 - 40918844
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  40918766 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 40918844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 20546328 - 20546413
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | | ||||||||||||| | ||||||||||||||||||||| ||  ||||||||||||||||||| ||||    
T  20546328 agaataattttgtttcacaatacttgtcactttcaggtttcaatgcaacattaattattgtcttgtcaataatacccttacatatt 20546413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 28562655 - 28562578
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||| ||||| ||||    
T  28562655 tttgtttcattttacttgtcactttcaagtttcaatgcaacattaattattggtttatcaatattactcttacctatt 28562578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 10180911 - 10180986
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttactta 299  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||| |||    |||||||||||||||||||||||    
T  10180911 tttgtttcacattacttgtcactttcaagtttcaatgcaacattagttatgaatttgtcaataatacccttactta 10180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 30999559 - 30999637
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||| ||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  30999559 agaataattttgtttcacaatacttgttactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 30999637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 37345813 - 37345735
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||| ||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  37345813 agaataattttgtttcacaatacttgtcattttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 37345735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 43275434 - 43275512
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| |   |||||||||||||||||    
T  43275434 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattatcttgtcaataataccctt 43275512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 26628851 - 26628936
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  ||| |||||| ||| ||||||||||||||||||||||| || ||| |||||||||||||||| ||||    
T  26628851 agaataattttgtttcactttatttgtcattttcaagtttcaatgcaacattaattattgatttatcaataatacccttacctatt 26628936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 289
Target Start/End: Original strand, 13880991 - 13881063
Alignment:
Q  217 gaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    |||||| ||||||| | ||||||||||||||| |||||||||||||| |||||||| || ||||| |||||||    
T  13880991 gaataattttgtttcaaattacttgtcactttcaagtttcaatgcaatattaattattgatttgttaataata 13881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 677
Target Start/End: Complemental strand, 6444412 - 6444144
Alignment:
Q  410 tggtggtgcgacgagcagcttaagccctccacaccacctacctccagatccgctgatgttcctgtacggtggttttggcagtggttccgactatcgatct 509  Q
    |||||||| ||||||| ||||  | ||||| || || ||||||||||||| |  |||| ||||| |||   ||||||||||||||||||||  || | ||    
T  6444412 tggtggtgtgacgagcggcttgtgtcctccgcatcagctacctccagatctgtggatggtcctgcacgacagttttggcagtggttccgacggtcaacct 6444313  T
Q  510 cttgtggagtcgtgaaatgtatcgcgactctgtttctttgcccattcaacatcgatggcttgagtttgtct--ttttggtatgcggtggttgatatcaga 607  Q
    ||||||| |||||||| ||||   | ||||||||||| ||    ||||||   |||||||||||||| |||  ||||| | ||| ||||||||||| | |    
T  6444312 cttgtggggtcgtgaattgtaatacaactctgtttctctggttgttcaactatgatggcttgagttt-tcttcttttgttgtgcagtggttgatatgata 6444214  T
Q  608 tccgttttctttcttgacggtggatgtaggttttgtttgctcacaatgtaggtggtgatggatcggtcac 677  Q
    |  | ||||| |||||   ||||||| ||||| ||||||||| |||  |||||||| |||||| ||||||    
T  6444213 tttgatttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcac 6444144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 30906724 - 30906809
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||| ||||| ||||||||| ||||| || ||| ||||||| |||||||| ||  |||| ||||||| |||||||||||    
T  30906724 agaataattttattttacattacttgttacttttaaattttaatgcaatattaattattgaattgttaataatatccttacttatt 30906809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 45400805 - 45400890
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  ||| |||||||||| || |||||||||||||||||||| |  ||| |||||||||  ||||||||||    
T  45400805 agaataattttgtttcactttatttgtcacttttaaatttcaatgcaacattaattattaatttatcaataatattcttacttatt 45400890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 18355903 - 18355988
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||    
T  18355903 agaataattttgtttcactttacttgtcactttcaagtttcaatgcaacattaattattgatttatcaataatacccttacttatt 18355988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 13703454 - 13703376
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||||| | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  13703454 agaataaatttgttttacaatacttgtcactttcaagtttcaatgcaacattaattattgtgttgtcaataataccctt 13703376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 48436466 - 48436381
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||| |||| |||||    
T  48436466 agaataattttgtttcacattacttgtcactttcaagtttcaatgcaacattaattattagcttgtcaataatacacttaattatt 48436381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 52805070 - 52805149
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttattaa 303  Q
    |||||||||| |||||||||||||| ||||||| |||||||||| |||| || ||| ||||||| |||||||||||||||    
T  52805070 tttgttttattttacttgtcactttcaagtttcgatgcaacatttattattgatttatcaataacacccttacttattaa 52805149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 13365085 - 13365007
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  13365085 agaataattttgtttcaaaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 13365007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 19241703 - 19241781
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  19241703 agaataattttgtttcaaaatacttgtcacttttaagtttcaatgcaacattaattattgacttgtcaataataccctt 19241781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 23087966 - 23088044
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  23087966 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 23088044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 294
Target Start/End: Original strand, 46694145 - 46694223
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  46694145 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 46694223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 1455186 - 1455266
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttac 296  Q
    ||||||| |||||||||  ||||||||||||||  | |||||||||||||||||||| |||||||||||||| | ||||||    
T  1455186 agaataaatttgttttactttacttgtcactttccaatttcaatgcaacattaattattggtttgtcaataacatccttac 1455266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 48820580 - 48820508
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatac 290  Q
    ||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  48820580 aataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgttttgtcaataatac 48820508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 32835024 - 32835103
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| || |||| ||| ||||||||| ||| |||||||||||||||||||| || || |||||||||||||||||||    
T  32835024 agaataatttcgtttcatagtacttgtcattttcaagtttcaatgcaacattaagtattgttttgtcaataataccctta 32835103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 3383318 - 3383244
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatac 290  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  3383318 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatac 3383244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 29375374 - 29375296
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||| |||||    
T  29375374 agaataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatgccctt 29375296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 36881522 - 36881444
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||||| ||||||| | | |||||||| |||| ||||||||||||||||||||||| ||  |||||||||||||||||    
T  36881522 agaataattttgtttcacaatacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaataataccctt 36881444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 199095 - 199019
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||| ||||||| | | || |||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||    
T  199095 aataattttgtttcacaatatttgtcattttcaagtttcaatgcaacattaattattgttttgtcaataataccctt 199019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 54086786 - 54086714
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttac 296  Q
    ||||||| || ||| |||||||||| |||||||||| |||||||||||| || ||| ||||||||||||||||    
T  54086786 tttgtttcattttatttgtcactttcaagtttcaatacaacattaattattgatttatcaataatacccttac 54086714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 6901803 - 6901724
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||||||| |  |||||||||||||| ||||||||||||||||||||| | || ||| ||||||||| |||||    
T  6901803 agaataattttgtttcactttacttgtcacttttaagtttcaatgcaacattaatcattgatttatcaataatatcctta 6901724  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 43750358 - 43750304
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatac 290  Q
    ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  43750358 tacttgtcactttcaagtttcaatgcaacattaattattgtcttgtcaataatac 43750304  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 52009101 - 52009158
Alignment:
Q  232 atattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||  ||||||||||||    
T  52009101 atattacttgtcactttcaagtttcgatgcaacattaattattgtcttgtcaataata 52009158  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 31873918 - 31873976
Alignment:
Q  236 tacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    |||||||| |||| ||||||||||||||||||||||| ||  ||||||| ||||||||||    
T  31873918 tacttgtccctttcaagtttcaatgcaacattaattattgtcttgtcaa-aataccctta 31873976  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 37293642 - 37293595
Alignment:
Q  224 tttgttttatattacttgtcactttaaagtttcaatgcaacattaatt 271  Q
    ||||||| || ||||||||| |||| ||||||||||||||||||||||    
T  37293642 tttgtttcattttacttgtccctttcaagtttcaatgcaacattaatt 37293595  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 295
Target Start/End: Complemental strand, 48963361 - 48963282
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| ||| ||| ||| || || ||| ||| ||||||||||||||||||||||| ||  |||||||||||| |||||    
T  48963361 agaataattttatttcataatatttatcatttttaagtttcaatgcaacattaattattgtcttgtcaataatatcctta 48963282  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 301
Target Start/End: Original strand, 53559648 - 53559731
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||| ||||||| |  |||||||||||| | ||||||||||||||||||||| | || ||| | ||||||||  |||||||||    
T  53559648 aataattttgtttcaatttacttgtcactctcaagtttcaatgcaacattaatcattgatttattaataatactgttacttatt 53559731  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 24064443 - 24064389
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    |||| ||||||||| |||||| |||| ||||||||||| |||||| |||||||||    
T  24064443 ttacatgtcactttcaagttttaatgtaacattaattattggtttatcaataata 24064389  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 26783711 - 26783661
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacat 266  Q
    ||||||| ||||||| |  |||||||||||||| |||||||||||||||||    
T  26783711 agaataattttgtttcactttacttgtcactttcaagtttcaatgcaacat 26783661  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 37781152 - 37781099
Alignment:
Q  242 tcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctta 295  Q
    ||||||| || ||||||| |||  ||||||| ||||||||||||||||||||||    
T  37781152 tcactttcaaatttcaatccaaagttaattattggtttgtcaataataccctta 37781099  T

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Target: scaffold0939 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 1183 - 1110
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    ||||||| |||||||||| |||||||||| ||| ||||||| ||||||||||||||| |||||| |||||||||    
T  1183 agaataattttgttttattttacttgtcatttttaagtttcgatgcaacattaattattggtttatcaataata 1110  T

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Target: scaffold0168 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 7892 - 7825
Alignment:
Q  234 attacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||| ||||| ||||    
T  7892 attacttgtcactttcaagttttaatgcaacattaattatcggtttgtcaataatactcttacctatt 7825  T

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Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 357 - 455
Target Start/End: Complemental strand, 35383 - 35286
Alignment:
Q  357 gccaccgccgtccaataatccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcagcttaagccctccacaccacctacctcca 455  Q
    ||||||||| ||||| |||||||| |||||||||| ||| | || | ||||  ||||||||||||||||||||| |||||||  |||||||||||||||    
T  35383 gccaccgccatccaa-aatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctcca 35286  T

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Target: scaffold0056 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 71325 - 71240
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||| ||| | ||||||||||||||| |||||| ||||||| |||||||| |||||||| ||| |||||||||| ||||    
T  71325 agaataattttatttcacattacttgtcacttttaagtttgaatgcaaaattaattattggtttgttaattatacccttacctatt 71240  T

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Target: scaffold0076 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 15377 - 15440
Alignment:
Q  235 ttacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttactt 298  Q
    |||| ||| ||||| |||||||||||||||||||||||  |||||||||||||||| |||||||    
T  15377 ttacatgtaacttttaagtttcaatgcaacattaattatcggtttgtcaataatacgcttactt 15440  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 6936 - 7020
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataatacccttacttatt 301  Q
    ||||||| ||||||| |||||| |||||  ||||| ||||||||||||||||||||| ||   |||||||||||| ||||||||||    
T  6936 agaataattttgtttcatattatttgtccgtttaa-gtttcaatgcaacattaattattgacgtgtcaataatactcttacttatt 7020  T

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Target: scaffold1770 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 401 - 326
Alignment:
Q  218 aataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataataccctt 294  Q
    ||||| ||||||| | | ||||||||||||| |||||||||||||||||||| || ||  |||||||||||||||||    
T  401 aataattttgtttcacaatacttgtcactttcaagtttcaatgcaacattaa-tattgtcttgtcaataataccctt 326  T

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Target: scaffold0062 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 302 - 375
Alignment:
Q  216 agaataactttgttttatattacttgtcactttaaagtttcaatgcaacattaattactggtttgtcaataata 289  Q
    ||||||| ||||||| | | ||||||||||||| || ||| |||||||||||||||| ||  ||||||||||||    
T  302 agaataattttgtttcacaatacttgtcacttttaaattttaatgcaacattaattattgtcttgtcaataata 375  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 234352 - 234389
Alignment:
Q  258 atgcaacattaattactggtttgtcaataataccctta 295  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  234352 atgcaacattaattactgttttgtcaataatactctta 234389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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