View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654-Insertion-6 (Length: 685)
Name: NF5654-Insertion-6
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 37865188 - 37864837
Alignment:
| Q |
8 |
ataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaagaaaataagttagttagaatctttagtagaatcaaatttctaaa |
107 |
Q |
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| T |
37865188 |
ataatggctatgtcaacgaagcatggcttgagagggaagttgaatggaactaagaagaaaataagttagttagaatctttagtagaatcaaatttctaaa |
37865089 |
T |
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| Q |
108 |
ataaataaacttaccgaaccagttgaacatttttctcctcgttttctcctcgttctaaaaattaaaactacttaccgaaccagttgtacaattttaaccc |
207 |
Q |
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| T |
37865088 |
ataaataaacttaccgaaccagttgtacatttttctcctcgttttctcctcgttctaaaaattaaaactacttaccgaaccagttgtacaattttaaccc |
37864989 |
T |
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| Q |
208 |
atcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaactaataatatgcaattagatacgactctgaggtacaaatatttagta |
307 |
Q |
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| T |
37864988 |
atcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaactaataatatgcaattagatacgactctgaggtacaaatatttagta |
37864889 |
T |
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| Q |
308 |
actgaaacatcttaagtaagattaagttcgattgattgaacctatatcaaat |
359 |
Q |
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| T |
37864888 |
actgaaacatcttaaataagattaagttcgattgattgaaccgatatcaaat |
37864837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 369 - 674
Target Start/End: Complemental strand, 37863936 - 37863631
Alignment:
| Q |
369 |
gaaaattaggctcgcctccccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
468 |
Q |
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| T |
37863936 |
gaaaattaggctcgcccgcccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc |
37863837 |
T |
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| Q |
469 |
ccttaacacaattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca |
568 |
Q |
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| T |
37863836 |
ccttaacaccattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca |
37863737 |
T |
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| Q |
569 |
agtatcacaacgtcaacataaattattattnnnnnnnnnctcacaacaatagcgagtaaattctgaaaattgtaatcagtcttattctttcttcacccac |
668 |
Q |
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| T |
37863736 |
agaatcacaacgtcaacataaattattattaaaaaaaaactcacaacaatagcgagtaaattctgaaaattgtaattagtcttattctttcttcacccac |
37863637 |
T |
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| Q |
669 |
acccac |
674 |
Q |
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|||||| |
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| T |
37863636 |
acccac |
37863631 |
T |
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