View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654-Insertion-8 (Length: 470)
Name: NF5654-Insertion-8
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 208 - 470
Target Start/End: Original strand, 44682606 - 44682868
Alignment:
| Q |
208 |
ataagtagaaaaatttaatgaatttaaacgtattgagatgatttaatcaagtcttcacttgatgataatatacaagcaaggcacgagaaattgtacctac |
307 |
Q |
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| T |
44682606 |
ataagtagaaaaatttaatgaatttaaacgtattgagatgatttaatcaagtcttcacttgatgataatatacaagtaaggcacgagaaattgtacctac |
44682705 |
T |
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| Q |
308 |
tatttcatttttcaaattgacatccttattttattgcaaaaacatagtgaaattatgtgtttaataatgtaaatgttgatgcatttaacttgtccaagat |
407 |
Q |
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| T |
44682706 |
tatttcatttttcaaattgacatccttattttattgcaaaaacataatgacattatgtgtttaataatgtaaatgttgatgcatttaacttgtccaagat |
44682805 |
T |
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| Q |
408 |
gaggcagagtttgggcaaagaacgcagcagttgtgtccgtaataataaagtggggtccggggg |
470 |
Q |
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| T |
44682806 |
gaggcagagtttgggcaaagaacgcagcagttgtgtccgtaataataaagtggggtccggggg |
44682868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 44682463 - 44682606
Alignment:
| Q |
8 |
aattttggttataaatatgtagagagaaattgtttacacccaagatcacttcataaatatatattcagaaaaagtatataatttttgtgtcctccaaaag |
107 |
Q |
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| T |
44682463 |
aattttggttataaatatgtagagagaaattgtttacacccaagatcacttcataaatatatattcagaaaaagtatataatttttgtgtcctccaaaag |
44682562 |
T |
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| Q |
108 |
tacatttatggacaaattttatcataaaaaagtgtactttaaca |
151 |
Q |
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| T |
44682563 |
tacatttatggacaaattttatcataaaaaagtgtactttaaca |
44682606 |
T |
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