View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654-Insertion-9 (Length: 457)
Name: NF5654-Insertion-9
Description: NF5654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 24 - 386
Target Start/End: Complemental strand, 17681957 - 17681590
Alignment:
| Q |
24 |
gcctgtcggagaagatcggagagtttctccactttggatttgatgtccacacattcttgcttgaacgggattgcctcctctgctgctttcgctactttgt |
123 |
Q |
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| T |
17681957 |
gcctgccgtagaagatcggagagtttctccactttggatctgatatccccacattcttgtttgaacgggattgccttctctgctgctttcgctactttgt |
17681858 |
T |
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| Q |
124 |
cggccagctggatcaactttgctagtctttgtttcactacatcattgttttcacccatttgaatttgtt-----gatacaaagagtatattcaaatgcgt |
218 |
Q |
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| T |
17681857 |
cggccagctggaccaaatttgctagcattcgtttcaaagaataattgtttttacccatttgaatttgatttgatgatacaaagagtatattcaaatgcgt |
17681758 |
T |
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| Q |
219 |
attctaattctcctactgcctaacacttcttcttttatcatcggattaagcttcaacggataaaacattcttagccacacatagctttactcagtctagt |
318 |
Q |
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| T |
17681757 |
attctaattctcctactgcctaacacttcttcttttatcatcggattaagctgcaacggacaaaacattcttagccacacatagccttactcagtctaat |
17681658 |
T |
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| Q |
319 |
caaaccgcgtactttgtccaccagctcgatcgaacctgctagtaattgcttcacagattcgttacccc |
386 |
Q |
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| T |
17681657 |
caaaccgcgtactttgtccgacagctgaatcgaacatgcttgtaattgcttcacatattcgttacccc |
17681590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 457
Target Start/End: Complemental strand, 17681470 - 17681430
Alignment:
| Q |
417 |
gggttaagctgcgcaacagacaaaacatgtctttttcttac |
457 |
Q |
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| T |
17681470 |
gggttaagcttcgcagcagacaaaacatgtctttttcttac |
17681430 |
T |
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