View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_16 (Length: 315)
Name: NF5654_1D_high_16
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 315
Target Start/End: Complemental strand, 13886893 - 13886601
Alignment:
| Q |
24 |
caaagaagatgagaatccacaacactaccaatgaaacttt--actcatttatacaaattccactacatttttcctctctataaccaatgagtgccnnnnn |
121 |
Q |
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| T |
13886893 |
caaagaagatgagaatccagaacagcaccaatgaaactttttactcatttatacaaattccactacatttttcctctctataaccaatg-gtgcctttta |
13886795 |
T |
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| Q |
122 |
nngttacaagactagaaagtagacacaactacttccatcgagaataatactaaacatagcgaatgaatgactcactaaaatgtatattcgtatgattaaa |
221 |
Q |
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| T |
13886794 |
tttttacaagaccagaaagtagacataactacttccatcgaaaaaaatactaaacatagcgaatgaatgactcattaaaatgtatattcgtatgattaaa |
13886695 |
T |
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| Q |
222 |
atattcttatctaaaactcatttatcttctgtatacaaatgcattgatatacactttacaaaaggagatgagatgatttgtttttgcaaaaaat |
315 |
Q |
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||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13886694 |
atatttgtatctaaaactcatttatcttttatatacaaatgcattgatatacactttatcaaaggagatgagatgatttgtttttgcaaaaaat |
13886601 |
T |
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