View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_26 (Length: 259)
Name: NF5654_1D_high_26
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 33488719 - 33488495
Alignment:
| Q |
23 |
gaatgaaatatcatcaaagtggaaccttaaaatagtgatattatatagaatgaaagtgatcttatttttagtttaatgtgttatttttcaagaggttagg |
122 |
Q |
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| T |
33488719 |
gaatgaaatatcatcaaagtggaaccttaaaatagtgatattatatagaatgaaagagatcttatttttagtttaatgtgttatttttcaagaggttagg |
33488620 |
T |
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| Q |
123 |
tgtatgaaagggaaaaccactatagttttatgaatcttagaaaatggttgaagaggagttggaatccactcatagtgcttgatttgaataagacattgag |
222 |
Q |
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| T |
33488619 |
tgtatgaaagggaaacccactatagttttatgaatcttagaaaattgttgaagaggagttggaatccactcatagtgcttgatttgaataagacattgag |
33488520 |
T |
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| Q |
223 |
atactacttaatgggaacaccaaac |
247 |
Q |
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| T |
33488519 |
atactacttaatggggacaccaaac |
33488495 |
T |
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