View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_28 (Length: 249)
Name: NF5654_1D_high_28
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 49563286 - 49563496
Alignment:
| Q |
20 |
atcaagagttagagcaacttataaatggtcaaatatgcttcaagatttatccatttagaagtggtatagttaaacctttgtgcagaagcaatattattac |
119 |
Q |
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| T |
49563286 |
atcaagagttagagcaacttataaatggtcaaatatgcttcaagatttatccatttagaagtggtatagttaaacctttgtgcagaagcaatattattac |
49563385 |
T |
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| Q |
120 |
agttacaatgacgatttactttgttattgataattttttattctctggtttcagagataccagcagaaaggaaaataatactgcctggttctttcaatcc |
219 |
Q |
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| T |
49563386 |
agttacaatgacgatttactttgttattgataattttttattctctggtttcagagataccagcagaaaggaaaataatactgcctggttctttcaatcc |
49563485 |
T |
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| Q |
220 |
tttacatgatg |
230 |
Q |
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| T |
49563486 |
tttacatgatg |
49563496 |
T |
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