View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_29 (Length: 246)
Name: NF5654_1D_high_29
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_29 |
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| [»] chr5 (4 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 37705504 - 37705277
Alignment:
| Q |
19 |
atcatgggggagaatgtaatttgttttgtagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatga |
118 |
Q |
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| T |
37705504 |
atcatgggggagaatgtaatttgttttgtagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatga |
37705405 |
T |
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| Q |
119 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttacatgctcaatgcattttctt |
218 |
Q |
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| T |
37705404 |
accaattataaaggtggtctaccgtagaacccacgagttgagtatcgatatccgatggcatctgatactttttctttttatatgctcaatgcattttctt |
37705305 |
T |
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| Q |
219 |
ttgtgctgtaacaaactttgaaaaaatt |
246 |
Q |
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| T |
37705304 |
ttgtgctgtaacaaactttgaagaaatt |
37705277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 37438116 - 37437986
Alignment:
| Q |
109 |
tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttacatgctcaat |
208 |
Q |
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| T |
37438116 |
tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt |
37438017 |
T |
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| Q |
209 |
gcattttcttttgtgctgtaacaaactttga |
239 |
Q |
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| T |
37438016 |
gcattttcttatgtgctataataagctttga |
37437986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
| Q |
111 |
catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttacatgctcaatgc |
210 |
Q |
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| T |
37700753 |
catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc |
37700654 |
T |
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| Q |
211 |
attttctt |
218 |
Q |
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| T |
37700653 |
attttctt |
37700646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 37438243 - 37438187
Alignment:
| Q |
47 |
tagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaa |
103 |
Q |
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| T |
37438243 |
tagctcgcactgaacatacaccaatcaagtcaccgtcttagtcgcaaatataggaaa |
37438187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 16840622 - 16840750
Alignment:
| Q |
119 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatcga-tatccgatgacatctgatactttttctttttacatgctcaatgcattttct |
217 |
Q |
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|||| ||||||| ||||| ||| |||||||||||||||||||||| | |||| |||||| | |||||||||||||||| ||||| | | |||||||| |
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| T |
16840622 |
accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct |
16840721 |
T |
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| Q |
218 |
tttgtgctgtaacaaactttgaaaaaatt |
246 |
Q |
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| T |
16840722 |
tatttgttataacaaactttgaataaatt |
16840750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 16840490 - 16840535
Alignment:
| Q |
58 |
gaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaa |
103 |
Q |
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| T |
16840490 |
gaacaaacatcaatcaagtcatcgtcttagtcgtaaatataagaaa |
16840535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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