View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_1D_high_3 (Length: 595)

Name: NF5654_1D_high_3
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_1D_high_3
NF5654_1D_high_3
[»] chr3 (4 HSPs)
chr3 (244-304)||(34228251-34228311)
chr3 (244-301)||(48252267-48252324)
chr3 (251-303)||(31472049-31472101)
chr3 (237-304)||(41287876-41287942)
[»] chr8 (6 HSPs)
chr8 (244-302)||(4989755-4989813)
chr8 (244-304)||(34085199-34085259)
chr8 (257-324)||(18200654-18200721)
chr8 (244-297)||(10451959-10452012)
chr8 (257-304)||(3347504-3347551)
chr8 (271-301)||(15869007-15869037)
[»] chr4 (17 HSPs)
chr4 (244-302)||(16831096-16831154)
chr4 (244-302)||(2908206-2908264)
chr4 (243-303)||(48524552-48524612)
chr4 (257-304)||(34458793-34458840)
chr4 (244-299)||(55090840-55090895)
chr4 (244-314)||(32325084-32325154)
chr4 (251-292)||(48400945-48400986)
chr4 (257-306)||(53145202-53145251)
chr4 (244-304)||(28299283-28299343)
chr4 (244-303)||(53142841-53142900)
chr4 (257-303)||(34236253-34236299)
chr4 (237-299)||(37992906-37992967)
chr4 (247-301)||(45921335-45921389)
chr4 (244-301)||(4860177-4860234)
chr4 (237-302)||(40298025-40298089)
chr4 (158-217)||(37992827-37992887)
chr4 (237-297)||(50101280-50101339)
[»] chr7 (6 HSPs)
chr7 (244-302)||(24937891-24937949)
chr7 (257-302)||(28664542-28664587)
chr7 (244-290)||(1112159-1112205)
chr7 (244-306)||(8656355-8656417)
chr7 (237-295)||(47537479-47537536)
chr7 (244-304)||(39786445-39786505)
[»] chr5 (9 HSPs)
chr5 (244-302)||(3600170-3600228)
chr5 (257-301)||(15139166-15139210)
chr5 (244-303)||(16802087-16802146)
chr5 (244-302)||(6102888-6102946)
chr5 (248-302)||(29552389-29552443)
chr5 (273-302)||(5471314-5471343)
chr5 (244-297)||(12036308-12036361)
chr5 (257-302)||(34346955-34347000)
chr5 (244-305)||(35290697-35290758)
[»] chr2 (7 HSPs)
chr2 (243-301)||(13835895-13835953)
chr2 (244-302)||(1870489-1870547)
chr2 (244-290)||(5444499-5444545)
chr2 (258-304)||(18857508-18857554)
chr2 (244-306)||(29525667-29525729)
chr2 (244-286)||(33635573-33635615)
chr2 (247-303)||(13618234-13618290)
[»] chr6 (3 HSPs)
chr6 (260-301)||(9213040-9213081)
chr6 (244-299)||(6770894-6770949)
chr6 (237-304)||(32800259-32800325)
[»] chr1 (7 HSPs)
chr1 (244-302)||(31160786-31160844)
chr1 (244-304)||(27558-27618)
chr1 (244-302)||(11065862-11065920)
chr1 (257-303)||(39993451-39993497)
chr1 (257-302)||(34382628-34382673)
chr1 (257-290)||(41936218-41936251)
chr1 (248-304)||(48375305-48375361)
[»] scaffold0299 (1 HSPs)
scaffold0299 (244-305)||(18008-18069)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 34228311 - 34228251
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    |||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||    
T  34228311 aaaagtcaaaatttatatttttaagacaaattttttatttatagtttccttaaccattgtc 34228251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 48252324 - 48252267
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    |||||||||||  ||||||||||| | ||||||||||||||||| || ||||||||||    
T  48252324 aaaagtcaaaacttatattttcaagataaattttttatttatagattccttaaccatt 48252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 31472101 - 31472049
Alignment:
Q  251 aaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| | ||||||    
T  31472101 aaaatttatattttcaaaataaattttttatttatagttttcttcatcattgt 31472049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 41287942 - 41287876
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||||||||| ||||||  |||||||| || ||||||||| |||||||||||| ||||| |||||||    
T  41287942 ttaatcaaaaa-tcaaaacttatatttttaaaacaaattttctatttatagtttccttaatcattgtc 41287876  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 4989755 - 4989813
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  4989755 aaaaatcaaaacttatattttcaagacaaattttttatttatagttttcttaaccattg 4989813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 34085259 - 34085199
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    |||||||||||  ||||||||||| |||||||||||||||||   ||||||||||||||||    
T  34085259 aaaagtcaaaacttatattttcaaaacaaattttttatttatgaatttcttaaccattgtc 34085199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 18200721 - 18200654
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgtcttcaagacaccgattagcaa 324  Q
    |||||||| || ||||| ||||||||| ||| ||||||||||||| |||| | |||||||||||||||    
T  18200721 tatatttttaagacaaaatttttatttgtagatttcttaaccattatcttgaggacaccgattagcaa 18200654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 10451959 - 10452012
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 297  Q
    |||||||||||  |||||||| |||||||| |||||||||||||||| ||||||    
T  10451959 aaaagtcaaaacttatatttttaatacaaaatttttatttatagtttccttaac 10452012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 3347551 - 3347504
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||||||||| ||||| ||||||||| ||| ||||||||||||||||    
T  3347551 tatattttcaagacaaaatttttatttgtagatttcttaaccattgtc 3347504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 301
Target Start/End: Complemental strand, 15869037 - 15869007
Alignment:
Q  271 aaattttttatttatagttttcttaaccatt 301  Q
    |||||||||||||||||||||||||||||||    
T  15869037 aaattttttatttatagttttcttaaccatt 15869007  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 16831154 - 16831096
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||    
T  16831154 aaaagtcaaaatttatatttttaaaacaaattttatatttatagttttcttaaccattg 16831096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 2908264 - 2908206
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||| ||||||| ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  2908264 aaaaatcaaaatttatattttcaagacaaattttctatttatagtttccttaaccattg 2908206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 48524552 - 48524612
Alignment:
Q  243 aaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  48524552 aaaaaatcaaaacttatattttctatacaaattttttatttatagtttgcttaatcattgt 48524612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 34458840 - 34458793
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  34458840 tatattttcaagacaaatttttcatttatggttttcttaaccattgtc 34458793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 55090840 - 55090895
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 299  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||| ||||||||    
T  55090840 aaaagtcaaaacttatattttcaagacaaatttttcatttatagtttccttaacca 55090895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 32325084 - 32325154
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtcttcaagacac 314  Q
    |||||||||||  ||||||||||| ||||||||||||| |||||||||  ||| ||||||| | |||||||    
T  32325084 aaaagtcaaaaattatattttcaagacaaattttttatctatagttttagtaagcattgtcatgaagacac 32325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 48400945 - 48400986
Alignment:
Q  251 aaaatatatattttcaatacaaattttttatttatagttttc 292  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  48400945 aaaatttatattttcaaaacaaattttttatttatagttttc 48400986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 53145202 - 53145251
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgtctt 306  Q
    ||||||||||  | |||||||||||||||||||| |||||||||||||||    
T  53145202 tatattttcatgataaattttttatttatagtttccttaaccattgtctt 53145251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 28299343 - 28299283
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||| |||||  ||||||||||||| ||||||| |||||||| ||| |||||||||||||    
T  28299343 aaaagacaaaacttatattttcaatataaattttctatttataatttccttaaccattgtc 28299283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 53142841 - 53142900
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    |||||| ||||  ||||||||||  ||||||||||||||||||| || ||||||||||||    
T  53142841 aaaagttaaaacttatattttcatgacaaattttttatttatagcttccttaaccattgt 53142900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 34236253 - 34236299
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    ||||||||||  ||||||||||||||||||||||  |||||||||||    
T  34236253 tatattttcaggacaaattttttatttatagtttctttaaccattgt 34236299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 37992906 - 37992967
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 299  Q
    ||||||||||| ||||||| ||||||||||| |||||| || ||||||||| ||| |||||||    
T  37992906 ttaatcaaaaa-tcaaaatttatattttcaaaacaaatcttctatttatagattttttaacca 37992967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 45921389 - 45921335
Alignment:
Q  247 agtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    ||||||||  ||||||||||| ||||||||| ||||||||| || ||||||||||    
T  45921389 agtcaaaacttatattttcaagacaaattttctatttatagattccttaaccatt 45921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 4860177 - 4860234
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    |||||||||||  ||||||||||| ||||||||| ||||| || ||| ||||||||||    
T  4860177 aaaagtcaaaacttatattttcaaaacaaattttctatttgtaatttccttaaccatt 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 40298025 - 40298089
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    ||||||||||| ||||||  ||||||||||| | ||||||| ||||||||||||  ||||||||||    
T  40298025 ttaatcaaaaa-tcaaaacttatattttcaaaataaattttctatttatagtttcattaaccattg 40298089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 37992827 - 37992887
Alignment:
Q  158 gagaatgctaaagtgtgtcctcatggcattggttaaacaatc-aaacaagtaactttttat 217  Q
    ||||||||||||  ||| ||||||| |||  ||||||||||| ||||||||||||||||||    
T  37992827 gagaatgctaaacggtgccctcatgacatcagttaaacaatcaaaacaagtaactttttat 37992887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 50101339 - 50101280
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 297  Q
    ||||||||||| ||||||  |||||||| || ||||||||||||||||||| ||| |||||    
T  50101339 ttaatcaaaaa-tcaaaacttatatttttaagacaaattttttatttatagattttttaac 50101280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 24937891 - 24937949
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||||||| |||||||| || ||||||||| |||||||||||| |||||||||||    
T  24937891 aaaagtcaaaatctatatttttaaaacaaattttctatttatagtttccttaaccattg 24937949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 28664587 - 28664542
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||    
T  28664587 tatattttcaatacaaattttctatttatagattccttaaccattg 28664542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 1112205 - 1112159
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttt 290  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||||    
T  1112205 aaaagtcaaaatttataatttcaaaacaaattttctatttatagttt 1112159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 8656355 - 8656417
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtctt 306  Q
    |||||| ||||  ||| |||| || ||||||||| |||||||||||| |||||||||||||||    
T  8656355 aaaagttaaaacttatttttttaagacaaattttctatttatagtttccttaaccattgtctt 8656417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 47537479 - 47537536
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttctta 295  Q
    ||||||||||| ||||||  ||||||||||| |||||||||| ||||||||||| ||||    
T  47537479 ttaatcaaaaa-tcaaaacttatattttcaagacaaatttttcatttatagtttcctta 47537536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 39786505 - 39786445
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    |||||| ||||  ||||||||||| |||| |||| ||||||||| || |||||||||||||    
T  39786505 aaaagttaaaacttatattttcaagacaagttttctatttatagattccttaaccattgtc 39786445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 3600170 - 3600228
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||| ||||||  ||||||||||| |||||| |||||||||||||||||||||||||||    
T  3600170 aaaattcaaaacttatattttcaagacaaatattttatttatagttttcttaaccattg 3600228  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 15139210 - 15139166
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  15139210 tatattttcaagacaaattttttatttatagtttccttaaccatt 15139166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 16802087 - 16802146
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    |||||||||||| ||||||||||| ||||||||| ||||||||||||  | |||||||||    
T  16802087 aaaagtcaaaatttatattttcaagacaaattttctatttatagtttcatgaaccattgt 16802146  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 6102888 - 6102946
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||||||  |||||||| || ||||||||| ||||||||| || |||||||||||    
T  6102888 aaaagtcaaaacttatattttgaagacaaattttctatttatagattccttaaccattg 6102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 29552389 - 29552443
Alignment:
Q  248 gtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||| ||||||| | | ||||||||| |||||||||||| |||||||||||    
T  29552389 gtcaaaatttatatttacgaaacaaattttctatttatagtttccttaaccattg 29552443  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 302
Target Start/End: Original strand, 5471314 - 5471343
Alignment:
Q  273 attttttatttatagttttcttaaccattg 302  Q
    ||||||||||||||||||||||||||||||    
T  5471314 attttttatttatagttttcttaaccattg 5471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 12036361 - 12036308
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaac 297  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||| || ||||||    
T  12036361 aaaagtcaaaacttatattttcaagacaaattttctatttataggttccttaac 12036308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 34346955 - 34347000
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    ||||||||||| ||||||||||||||| ||| || |||||||||||    
T  34346955 tatattttcaagacaaattttttatttgtagattccttaaccattg 34347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 35290697 - 35290758
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtct 305  Q
    ||||||||||| ||||||||| || ||||||||| || |||||| || ||||| ||||||||    
T  35290697 aaaagtcaaaacatatatttttaagacaaattttctaattatagattacttaatcattgtct 35290758  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 13835895 - 13835953
Alignment:
Q  243 aaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    ||||||||||||  ||||||||||| ||| ||||| |||||||||||||||||||||||    
T  13835895 aaaaagtcaaaacttatattttcaagacagattttctatttatagttttcttaaccatt 13835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 1870547 - 1870489
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    ||||||||||   ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  1870547 aaaagtcaaagcttatattttcaagacaaattttctatttatagtttccttaaccattg 1870489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 5444545 - 5444499
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttt 290  Q
    |||||||||||  ||||||||||| ||||| ||||||||||||||||    
T  5444545 aaaagtcaaaacttatattttcaagacaaaatttttatttatagttt 5444499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 18857508 - 18857554
Alignment:
Q  258 atattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||||| || ||||| |||||||||||||||||||||| |||||||    
T  18857508 atatttttaagacaaactttttatttatagttttcttaatcattgtc 18857554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 29525667 - 29525729
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtctt 306  Q
    |||||||||||| ||||||||  | | ||| ||||||||||||| ||||||||||||| ||||    
T  29525667 aaaagtcaaaatttatatttttgagataaaatttttatttatagatttcttaaccattatctt 29525729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 33635573 - 33635615
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttata 286  Q
    |||||||||||| ||||||||||| |||||||||| |||||||    
T  33635573 aaaagtcaaaatttatattttcaagacaaatttttcatttata 33635615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 13618234 - 13618290
Alignment:
Q  247 agtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    ||||||||  |||||||| || |||| |||| |||||||| ||||||||||||||||    
T  13618234 agtcaaaacttatatttttaagacaatttttatatttataattttcttaaccattgt 13618290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 9213081 - 9213040
Alignment:
Q  260 attttcaatacaaattttttatttatagttttcttaaccatt 301  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  9213081 attttcaagacaaattttttatttatagttttcttaaccatt 9213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 6770894 - 6770949
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaacca 299  Q
    |||||||||||| ||||||||||| | ||||||| |||||||||||| ||||||||    
T  6770894 aaaagtcaaaatttatattttcaagataaattttctatttatagtttccttaacca 6770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 32800259 - 32800325
Alignment:
Q  237 ttaatcaaaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    ||||||||||| ||||||  |||||||| || ||||||||| |||||||||||| |||||||||||||    
T  32800259 ttaatcaaaaa-tcaaaacttatatttttaagacaaattttctatttatagtttccttaaccattgtc 32800325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 31160786 - 31160844
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||||||| |||||||| || ||||||||| |||||||| ||| |||||||||||    
T  31160786 aaaagtcaaaatttatatttttaagacaaattttctatttatattttccttaaccattg 31160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 27558 - 27618
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    |||||||||||  |||||||| || |||||||||||||||||||||  ||||| |||||||    
T  27558 aaaagtcaaaacttatattttaaagacaaattttttatttatagttcccttaatcattgtc 27618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 11065920 - 11065862
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||||||  ||||||||||| | ||||||| || ||||||||| |||||||||||    
T  11065920 aaaagtcaaaacttatattttcaagagaaattttataattatagtttccttaaccattg 11065862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 39993451 - 39993497
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattgt 303  Q
    ||||||||||| ||||| ||||||||| ||| |||||||||||||||    
T  39993451 tatattttcaagacaaaatttttatttgtagatttcttaaccattgt 39993497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 34382673 - 34382628
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttttcttaaccattg 302  Q
    |||||||| || | |||||||||||||||||||||||||| |||||    
T  34382673 tatatttttaagataaattttttatttatagttttcttaatcattg 34382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 41936218 - 41936251
Alignment:
Q  257 tatattttcaatacaaattttttatttatagttt 290  Q
    ||||||||||| ||||||||||||||||||||||    
T  41936218 tatattttcaagacaaattttttatttatagttt 41936251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 48375305 - 48375361
Alignment:
Q  248 gtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtc 304  Q
    |||||||  ||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  48375305 gtcaaaacttatattttctagacaatttttatatttatagttttcttaactattgtc 48375361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 18069 - 18008
Alignment:
Q  244 aaaagtcaaaatatatattttcaatacaaattttttatttatagttttcttaaccattgtct 305  Q
    |||||||||||  |||||||| || | ||||||| |||||||||||| |||||||| |||||    
T  18069 aaaagtcaaaacttatatttttaagataaattttctatttatagtttccttaaccaatgtct 18008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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