View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_34 (Length: 222)
Name: NF5654_1D_high_34
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 7804489 - 7804684
Alignment:
| Q |
20 |
ttgatcctacacatcacttgtaaccttcacgaacggcaaaccttgcactccagccactcccaatgcttctccgacaagtatttatttttgaaaagactag |
119 |
Q |
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| T |
7804489 |
ttgatcctacgcatcacttgtaaccttcacgaacggcaaaccttgcactccagccactcccaatgcttctccgacaagtatttatttttgaaaagactag |
7804588 |
T |
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| Q |
120 |
ggattaaattacccggattcatcaaaaactaccatgcttgcgtttactaagcattgcatgattaaaagcctaaattcttttaaaacgcatttcggc |
215 |
Q |
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| T |
7804589 |
ggattaaattacccggattcgtcaaaaactaccatgcttgcgtttactacgcattgcatgattaaaagcctaaattcttttaaaacgcatttcggc |
7804684 |
T |
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