View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_high_36 (Length: 220)
Name: NF5654_1D_high_36
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 41957931 - 41957823
Alignment:
| Q |
8 |
aatgagatggacatcaggatatgataagttaatgttgaatattattccattttgccactttagattaaattttatttctgaatgagagttgcgttaacta |
107 |
Q |
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| T |
41957931 |
aatgagacagacatcaggatatgataagttaatgttgaatattattccattttgccactttagtttaaattttatttctgaatgagagctctgttaacta |
41957832 |
T |
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| Q |
108 |
accagatag |
116 |
Q |
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||||||||| |
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| T |
41957831 |
accagatag |
41957823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 41957756 - 41957717
Alignment:
| Q |
181 |
catatccatcattcttttttaagaaccataacgtgatttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
41957756 |
catatccatcattcttttttaagaaccataacgtgatttt |
41957717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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