View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_1D_high_4 (Length: 480)
Name: NF5654_1D_high_4
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 13879675 - 13879406
Alignment:
| Q |
36 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879675 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
13879576 |
T |
|
| Q |
136 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879575 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
13879476 |
T |
|
| Q |
236 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879475 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
13879406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 46 - 305
Target Start/End: Complemental strand, 13875448 - 13875189
Alignment:
| Q |
46 |
atcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattgatgtctgtgt |
145 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13875448 |
atcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagagattgatgtctgtgt |
13875349 |
T |
|
| Q |
146 |
tgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactttgttaacact |
245 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| |||||||||| ||||||| ||||| |||||||||||||||| | |||| ||||||||||| |
|
|
| T |
13875348 |
tgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcgacgttgttaacact |
13875249 |
T |
|
| Q |
246 |
aaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaag |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| |||||||| |||||| |
|
|
| T |
13875248 |
aaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaag |
13875189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 367 - 480
Target Start/End: Complemental strand, 13879344 - 13879231
Alignment:
| Q |
367 |
ctcatctagatatgttttaggtttcacttaaaagagggagggatgaacagagaagtagttttttagttactattttaaatgatgaattagtttgcatgta |
466 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879344 |
ctcatctagctatgttttaggtttcacttaaaagagggagggatgaacagagaagtagtattttagttactattttaaatgatgaattagtttgcatgta |
13879245 |
T |
|
| Q |
467 |
tttgagatctaaaa |
480 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
13879244 |
tttgagatctaaaa |
13879231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University