View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_11 (Length: 407)
Name: NF5654_1D_low_11
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 24 - 393
Target Start/End: Complemental strand, 31650597 - 31650228
Alignment:
| Q |
24 |
aatcactcattagacggataacgagttttatgaagataaataaaattttcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataat |
123 |
Q |
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| T |
31650597 |
aatcactcattagacggataacgagttttatgaagaaaaataaaattctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataat |
31650498 |
T |
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| Q |
124 |
caaaataaacatcaaaatcgcataactggagattctccggtgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttt |
223 |
Q |
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| T |
31650497 |
caaaataaacatcaaaatcgcataattggagattctccggtgagaacaattggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttt |
31650398 |
T |
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| Q |
224 |
tgtagatgcaagaagtggcaatggtggtgatgttcgaaatggatattcttgtttacttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
323 |
Q |
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| T |
31650397 |
tgtagatgcaagaagtggcaatggtggtgatggtcgaaatggatattcttgtttatttgaaatgttgttattatcgaaactaagtaatattgaagagtca |
31650298 |
T |
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| Q |
324 |
acatcagaggagaaaattgattccaaatttaagtctgaatggtaagagcttttgcaagtgtgatgtccat |
393 |
Q |
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| T |
31650297 |
acatcataggagaaaattgattccaaatttaagtctgaatggtaagagcttttgcaagtgtgatggccat |
31650228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 72 - 388
Target Start/End: Complemental strand, 31657563 - 31657244
Alignment:
| Q |
72 |
tcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaatcgcataactggagattctccggtgagaaca |
171 |
Q |
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| T |
31657563 |
tcaaattaaaaagattcgatcgatgataactcactaacatctcttaaataatcgaaatacacatcaaaatcgcataactggaggttctctgatgggagca |
31657464 |
T |
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| Q |
172 |
attggttttgaggaaaatgatcatgatgtatctcttccttgggatctccttttgtagatgcaagaagtggcaatggtggtgat---------gttcgaaa |
262 |
Q |
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|||||| | |||||||| |||||| || |||||||||||||| || |||||||||||||||||||||||||| |||| ||| | |||||| |
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| T |
31657463 |
attggtctcgaggaaaacgatcattgtggatctcttccttgggttcctcttttgtagatgcaagaagtggcaattgtggcgatggtggtcgcggtcgaaa |
31657364 |
T |
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| Q |
263 |
tggatattcttgtttacttgaaatgttgttattatcgaaactaagtaatattgaagagtcaacatcagaggagaaaattgattccaaatttaagtctgaa |
362 |
Q |
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|||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||| || | ||||| |||||||| |||| ||||||| |
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| T |
31657363 |
tggaaattcttgttcacttgaaatgttg---ttatcgaaactaagtaatatagaagagt---catcgtagcacaaaatggattccaattttatgtctgaa |
31657270 |
T |
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| Q |
363 |
tggtaagagcttttgcaagtgtgatg |
388 |
Q |
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| T |
31657269 |
tggtaagagcttttgcaagtgtgatg |
31657244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 112 - 393
Target Start/End: Original strand, 31658707 - 31658979
Alignment:
| Q |
112 |
gtctcaaataatcaaaataaacatcaaaatcgcataactggagattctccggtgagaacaattggttttgaggaaaatgatcatgatgtatctcttcctt |
211 |
Q |
| |
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|||||||||||||||||||||| ||||| | ||| | ||| || || | |||||||||||| ||||||| | ||| ||||| ||| ||||||||||| |
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| T |
31658707 |
gtctcaaataatcaaaataaacttcaaagttacatgatatgaggttatctgatgagaacaattgattttgagaagaataatcatcatgaatctcttcctt |
31658806 |
T |
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| Q |
212 |
gggatctccttttgtagatgcaagaagtggcaatggtggtgatgttcgaaatggatattcttgtttacttgaaatgttgttattatcgaaactaagtaat |
311 |
Q |
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||||| |||||||||||||||||| |||||| |||||||| | |||| | | ||||| |||| ||| ||||||| ||||| |||||||||||| |
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| T |
31658807 |
aggatcctcttttgtagatgcaagaaatggcaa---tggtgatggtggaaacgagttttcttctttaattggaatgttg---ttatcaaaactaagtaat |
31658900 |
T |
|
| Q |
312 |
attgaagagtcaacatcagaggagaaaattgattccaaatttaagtctgaatggtaagagcttttgcaagtgtgatgtccat |
393 |
Q |
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|| ||||||| ||| || || ||||| ||||||||||||| |||||||| || | ||||||||||||||||| |||| |
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| T |
31658901 |
atagaagagt---catttgatgacaaaatggattccaaatttatatctgaatgcaaataacttttgcaagtgtgatggccat |
31658979 |
T |
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