View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_1D_low_14 (Length: 387)
Name: NF5654_1D_low_14
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 11717980 - 11718336
Alignment:
| Q |
1 |
aattaagtgtacaaaatatactt------gaagagataccgttttannnnnnnncaaatagtctaccgactgtaatttcacctttaatggtgaataagta |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11717980 |
aattaagtgtacaaaatatacttctgattgaagagataccgttttattttttttcaagtagtctaccgactataatttcacctttaatggtgaataagta |
11718079 |
T |
|
| Q |
95 |
aggagtttgggattcaaactcggacctcagcatatataatgcttatactttgcttatagttttgtgctaattgttaatttcattagtaaatgtacaatta |
194 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11718080 |
aggagtttgggattcgaacccggacctcagcatatataatgcttatattttgcttatagttttgtgctaattgttaatttcattagtaactgtacaatta |
11718179 |
T |
|
| Q |
195 |
ttttgtgacatgttttatcatttcatgaacttttacaccaattgttacagcggacgccaagcattaagaaaaagacttgaagaggtaatcat--catttc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11718180 |
ttttgtgacatgttttatcatttcatgaacttttacaccaattgttacagcggacgccaggcattaagaaaaagacttgaagaggtaatcatcacatttc |
11718279 |
T |
|
| Q |
293 |
attcatattcaataaaagcatatttactttttgttaattttgtttcatgtgttattt |
349 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
11718280 |
attcatatgcaataaaagcatattaactatttgttaattttgtttcatgtgttattt |
11718336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University