View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_19 (Length: 341)
Name: NF5654_1D_low_19
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_19 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 13784407 - 13784070
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
13784407 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgctgttgcctttgt |
13784308 |
T |
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| Q |
104 |
gtttgtccgaaaatggagatgtcatgttgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttct |
203 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13784307 |
gtttgtccgaaaatggagatgtcctgttgcttgctaacaaagaagaacttttagatcttgttattatgtataatcggagagatgatatagttgaatttct |
13784208 |
T |
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| Q |
204 |
tcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgttt |
303 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13784207 |
tcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggttttgcctcattctcatccacattaagctcctctacatcaattgttt |
13784108 |
T |
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| Q |
304 |
gtttttagaacttttgctaaactatgaaagtggcgtga |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
13784107 |
gtttttagaacttttgctaaactatgaaagtggcgtga |
13784070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 34070 - 33730
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
34070 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgcgcctaattttctgttgttgcctgtgt |
33971 |
T |
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| Q |
104 |
gtttgtccgaaaatggagatgtcatgttgctcgctaacaaagaagaa---cgtttagatcttgttattatgtataatcggagagatgatatagttgaatt |
200 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||||||| || | |||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
33970 |
gtttgtccgaaaatggagatgtcctgttgctggctaccaaagaaaaagatcttttaaattttgttattatgtataatcggagagatgatatagttcaatt |
33871 |
T |
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| Q |
201 |
tcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattg |
300 |
Q |
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||||| | ||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
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| T |
33870 |
tcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcctcgtcctcatccacattaagctcctatacttcaattg |
33771 |
T |
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| Q |
301 |
tttgtttttagaacttttgctaaactatgaaagtggcgtga |
341 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| |
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| T |
33770 |
tttgttttcaaaacttttgctaaactatgaaagtggcgtga |
33730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 4 - 341
Target Start/End: Complemental strand, 40794219 - 40793879
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatctaaaattttatgatattgtgcctgattttctgttgttgcctgtgt |
103 |
Q |
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|||| |||||||||||||||||||||||||||| || |||| | |||||||||||| |||||| ||||||||||||| |||| |||||||||| |||| |
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| T |
40794219 |
gagtttggagttcaagaatcttggactcggttgatggatgttatttatgtgcatcttaaatttggtgatattgtgcctagttttatgttgttgccagtgt |
40794120 |
T |
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| Q |
104 |
gtttgtccgaaaatggagatgtcatgttgctcgctaacaaagaagaacgt---ttagatcttgttattatgtataatcggagagatgatatagttgaatt |
200 |
Q |
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| |||||||| ||| ||||||| ||||||| |||| ||| |||| | | |||||| |||||||||||||||||| || |||||||||||||||||| |
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| T |
40794119 |
atctgtccgaagatgaagatgtcctgttgctggctagcaacgaagtagatattttagattttgttattatgtataatcagatagatgatatagttgaatt |
40794020 |
T |
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| Q |
201 |
tcttcaatttcctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattg |
300 |
Q |
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||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
40794019 |
tcttcaacttcctaacaatcaaatttaggcggccgatgaacatatgcatagcttgattttgcctcgtcatcatccacattaagctcctctatgtcaattg |
40793920 |
T |
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| Q |
301 |
tttgtttttagaacttttgctaaactatgaaagtggcgtga |
341 |
Q |
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|||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
40793919 |
tttgttttcagaacttttgctagactatgaaagtggtgtga |
40793879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 305
Target Start/End: Complemental strand, 33637587 - 33637397
Alignment:
| Q |
112 |
gaaaatggagatgtcatgttgctcgctaacaaagaagaacgtttagatcttgttattatgtataatcggagagatgatatagttgaatttcttcaatttc |
211 |
Q |
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||||||||| ||||||||||||| |||| ||||| || ||| ||| | ||| |||||||||| |||||||||||| || |||| | || || ||| |
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| T |
33637587 |
gaaaatggaaatgtcatgttgctggctagcaaaggagc---ttttgatgatattagtatgtataataggagagatgatagagctgaacatattgaacttc |
33637491 |
T |
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| Q |
212 |
ctaacaacaaaatttgggcggctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgt |
305 |
Q |
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| ||||| |||||||| ||||||||||||||| | ||||||||||| || ||| ||| ||||||||||||| || | || ||||||||||| |
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| T |
33637490 |
ttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttccccgtcctcttccacattaagcttctatgcaacaattgtttgt |
33637397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 33637698 - 33637649
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgt |
53 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| || ||||| |
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| T |
33637698 |
gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgt |
33637649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 13632 - 13709
Alignment:
| Q |
232 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt |
309 |
Q |
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||||||||||||||||| ||||||||||||||| || ||| |||||||||| ||| | | || ||| ||||||||||| |
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| T |
13632 |
gctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgttttt |
13709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 13413 - 13468
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatct |
59 |
Q |
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|||| |||||||||||| |||||||||| |||||||||||| || ||||| ||||| |
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| T |
13413 |
gagtttggagttcaagagtcttggactcagttggtgaatgttagctatgttcatct |
13468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 3838151 - 3838228
Alignment:
| Q |
232 |
gctgatgaacatatgcatagcttggttttgcctcgttctcatccacattaagctcctctacatcaattgtttgttttt |
309 |
Q |
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||||| ||||||||||| ||||||||||||||| || |||||||||||||| ||| | | || ||| ||||||||||| |
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| T |
3838151 |
gctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgttttt |
3838228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 3837932 - 3837972
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgt |
44 |
Q |
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|||| |||||||||||| |||||||||| |||||||||||| |
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| T |
3837932 |
gagtttggagttcaagagtcttggactcagttggtgaatgt |
3837972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 20476017 - 20475962
Alignment:
| Q |
4 |
gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgtgcatct |
59 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||| || |||| |||||| |
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| T |
20476017 |
gagtttggggttcaagagtcttggactcggttggtgaatgttagctatgcgcatct |
20475962 |
T |
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Back To:
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