View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_1D_low_2 (Length: 838)

Name: NF5654_1D_low_2
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_1D_low_2
NF5654_1D_low_2
[»] chr8 (3 HSPs)
chr8 (79-126)||(21530869-21530916)
chr8 (68-114)||(2527278-2527324)
chr8 (239-276)||(33570465-33570502)
[»] chr7 (3 HSPs)
chr7 (69-114)||(42254605-42254650)
chr7 (68-127)||(8856353-8856412)
chr7 (68-114)||(34708750-34708796)
[»] chr4 (3 HSPs)
chr4 (77-114)||(50501491-50501528)
chr4 (68-114)||(21378364-21378410)
chr4 (77-114)||(1052887-1052924)
[»] chr1 (3 HSPs)
chr1 (74-114)||(46851046-46851086)
chr1 (79-114)||(34010183-34010218)
chr1 (239-276)||(9527448-9527485)
[»] chr5 (6 HSPs)
chr5 (79-114)||(12707880-12707915)
chr5 (79-114)||(12769129-12769164)
chr5 (67-114)||(43370820-43370867)
chr5 (76-126)||(11462822-11462872)
chr5 (239-276)||(9408986-9409023)
chr5 (77-114)||(12819550-12819587)
[»] chr2 (2 HSPs)
chr2 (79-114)||(32738308-32738343)
chr2 (79-108)||(6590972-6591001)
[»] chr6 (1 HSPs)
chr6 (68-114)||(31444296-31444342)
[»] chr3 (2 HSPs)
chr3 (68-114)||(44037448-44037496)
chr3 (435-500)||(47531397-47531461)


Alignment Details
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 21530869 - 21530916
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttcatctatgtactagaaaaa 126  Q
    |||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  21530869 tgtgtgagtttataatggttttaccatttcgtctatctactaaaaaaa 21530916  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 2527278 - 2527324
Alignment:
Q  68 acctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    ||||| ||||||||||||||||||||||  ||||||||||| |||||    
T  2527278 acctccacttatgtgtgagtttataatgactttaccatttcgtctat 2527324  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 33570465 - 33570502
Alignment:
Q  239 gttcaaactccgacccatgcatataacaatgcattgtc 276  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  33570465 gttcgaaccccgacccatgcatataacaatgcattgtc 33570502  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 42254605 - 42254650
Alignment:
Q  69 cctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||    
T  42254605 cctccacttatgtgtgagtttataatggctttgccatttcatctat 42254650  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 8856353 - 8856412
Alignment:
Q  68 acctctacttatgtgtgagtttataatggttttaccatttcatctatgtactagaaaaat 127  Q
    |||||||||| |||||||||||||||||| ||| ||||||| ||||| ||| | ||||||    
T  8856353 acctctacttgtgtgtgagtttataatggctttgccatttcgtctatctacaaaaaaaat 8856412  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 34708750 - 34708796
Alignment:
Q  68 acctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| |||||    
T  34708750 acctccacttatgtgtgagtttataatggctttgccatttcgtctat 34708796  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 50501491 - 50501528
Alignment:
Q  77 tatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||||||||||||||| |||||    
T  50501491 tatgtgtgagtttataatggttttaccatttcgtctat 50501528  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 21378364 - 21378410
Alignment:
Q  68 acctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| |||||    
T  21378364 acctccacttatgtgtgagtttataatggctttgccatttcgtctat 21378410  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 1052924 - 1052887
Alignment:
Q  77 tatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  1052924 tatgtgtgagtttataatggctttatcatttcatctat 1052887  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 46851046 - 46851086
Alignment:
Q  74 acttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  46851046 acttgtgtgtgagtttataatggttttgccatttcatctat 46851086  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 34010183 - 34010218
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||||| |||||||||||||    
T  34010183 tgtgtgagtttataatggttttgccatttcatctat 34010218  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 9527485 - 9527448
Alignment:
Q  239 gttcaaactccgacccatgcatataacaatgcattgtc 276  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  9527485 gttcaaaccccgacccctgcatataacaatgcattgtc 9527448  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 12707915 - 12707880
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||||||||||||| |||||    
T  12707915 tgtgtgagtttataatggttttaccatttcgtctat 12707880  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 12769164 - 12769129
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||||||||||||| |||||    
T  12769164 tgtgtgagtttataatggttttaccatttcgtctat 12769129  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 43370867 - 43370820
Alignment:
Q  67 cacctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||| | |||||||||||||||||||||||||  ||||||||||||    
T  43370867 cacctccatttatgtgtgagtttataatggttttgtcatttcatctat 43370820  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 11462822 - 11462872
Alignment:
Q  76 ttatgtgtgagtttataatggttttaccatttcatctatgtactagaaaaa 126  Q
    ||||||||||||||||||||  |||||||| |||||||| ||| |||||||    
T  11462822 ttatgtgtgagtttataatgtctttaccatctcatctatctacaagaaaaa 11462872  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 9408986 - 9409023
Alignment:
Q  239 gttcaaactccgacccatgcatataacaatgcattgtc 276  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  9408986 gttcgaactccgacccctgcatataacaatgcattgtc 9409023  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 12819587 - 12819550
Alignment:
Q  77 tatgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  12819587 tatgtgtgagtttataatggctttaccatttcgtctat 12819550  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 114
Target Start/End: Complemental strand, 32738343 - 32738308
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||||||| |||||||||||||    
T  32738343 tgtgtgagtttataatggttttgccatttcatctat 32738308  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 6590972 - 6591001
Alignment:
Q  79 tgtgtgagtttataatggttttaccatttc 108  Q
    ||||||||||||||||||||||||||||||    
T  6590972 tgtgtgagtttataatggttttaccatttc 6591001  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 31444342 - 31444296
Alignment:
Q  68 acctctacttatgtgtgagtttataatggttttaccatttcatctat 114  Q
    ||||| ||||||||||||||||||||||| ||| ||||||| |||||    
T  31444342 acctccacttatgtgtgagtttataatggctttgccatttcgtctat 31444296  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 44037496 - 44037448
Alignment:
Q  68 acctctacttatgtgtg--agtttataatggttttaccatttcatctat 114  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||||||    
T  44037496 acctctacttatgtgtgtgagtttataatggttttgtcatttcatctat 44037448  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 47531397 - 47531461
Alignment:
Q  435 aatgttgcttttacttttgaatagtttgtaagactaagctagtttttattatggttttgtttccta 500  Q
    |||||||||  ||||||||| ||||||||||||||| |||| |||| |||||| | ||||||||||    
T  47531397 aatgttgctactacttttga-tagtttgtaagactatgctacttttgattatgttgttgtttccta 47531461  T

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