View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_20 (Length: 325)
Name: NF5654_1D_low_20
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 23 - 325
Target Start/End: Complemental strand, 12610644 - 12610342
Alignment:
| Q |
23 |
agctggcatgtgagatattggagctaatggcagaaggtttgggggtccctgatacatccattttcagcacattcatcactcaacttgataatgactcact |
122 |
Q |
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| T |
12610644 |
agctggcatgtgagatattggagctaatggcagaaggtttgggggtccctgatacatccattttcagcacattcatcactcaacttgataatgactcact |
12610545 |
T |
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| Q |
123 |
ccttaggttcaatcactaccctcctaaagactgcaaagatagagacaactcaaattcctacaacgttggctttggagaacattctgaccctcagattctt |
222 |
Q |
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| T |
12610544 |
ccttaggttcaatcactaccctcctaaagactgcaaagatagagacaactctaattcctacaacgttggctttggagaacattctgaccctcagattctt |
12610445 |
T |
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| Q |
223 |
actatccttagatccaacgatgttgctggtcttcaaatttcacttcaacatggtgtgtggaacccagttactcctgacccagctgctttctgtgttaacg |
322 |
Q |
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| T |
12610444 |
actatccttagatccaacgatgttgctggtctccaaatttcacttcaacatggtgtgtggaacccagttactcctgacccagctgctttctgtgttaacg |
12610345 |
T |
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| Q |
323 |
ttg |
325 |
Q |
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| T |
12610344 |
ttg |
12610342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 50756269 - 50756513
Alignment:
| Q |
26 |
tggcatgtgagatattggagctaatggcagaaggtttgggggtccctgatacatccattttcagcacattcatcactcaacttgataatgactcactcct |
125 |
Q |
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| T |
50756269 |
tggcatgtgagatattagagctaatggcagagggtttgggggtccctgatacaaaggttttcagcagtttgataaaggatattgatagtgactcagttct |
50756368 |
T |
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| Q |
126 |
taggttcaatcactaccctcctaaagactgcaaagatagagacaactcaaattcctacaacgttggctttggagaacattctgaccctcagattcttact |
225 |
Q |
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|||| ||||||||||||| |||| | || | | || ||||| ||| ||||| |||| ||||||||||| || ||||||||||||||||| | || |
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| T |
50756369 |
taggctcaatcactacccacctaca--cttaaca---ag-gacaagtcacattccaacaatgttggctttggggagcattctgaccctcagatcttgacc |
50756462 |
T |
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| Q |
226 |
atccttagatccaacgatgttgctggtcttcaaatttcacttcaacatggt |
276 |
Q |
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| T |
50756463 |
attcttagatctaatgacgtttctggtcttcaaatttctcttcaacatggt |
50756513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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