View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_1D_low_21 (Length: 320)

Name: NF5654_1D_low_21
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_1D_low_21
NF5654_1D_low_21
[»] chr2 (16 HSPs)
chr2 (68-232)||(25367103-25367268)
chr2 (68-184)||(44332591-44332707)
chr2 (69-232)||(1734596-1734760)
chr2 (68-232)||(1737368-1737533)
chr2 (68-184)||(36631855-36631971)
chr2 (68-184)||(36626400-36626516)
chr2 (81-181)||(37019984-37020084)
chr2 (68-184)||(18812818-18812935)
chr2 (81-181)||(1245570-1245670)
chr2 (68-184)||(18814425-18814541)
chr2 (81-181)||(37013518-37013618)
chr2 (81-181)||(6901521-6901621)
chr2 (68-163)||(44338982-44339077)
chr2 (81-181)||(11745139-11745239)
chr2 (81-181)||(11752546-11752646)
chr2 (81-181)||(43800618-43800718)
[»] chr8 (5 HSPs)
chr8 (68-184)||(34362373-34362489)
chr8 (69-228)||(8598349-8598508)
chr8 (68-228)||(8589166-8589327)
chr8 (82-184)||(34362668-34362770)
chr8 (71-184)||(4390733-4390846)
[»] chr6 (5 HSPs)
chr6 (68-184)||(22022483-22022599)
chr6 (81-181)||(13653951-13654051)
chr6 (68-163)||(22028831-22028926)
chr6 (81-181)||(13649761-13649861)
chr6 (81-177)||(9664275-9664371)
[»] chr3 (6 HSPs)
chr3 (70-221)||(26527744-26527896)
chr3 (123-184)||(26521443-26521504)
chr3 (81-181)||(53345462-53345562)
chr3 (81-181)||(53135926-53136026)
chr3 (68-108)||(26521417-26521457)
chr3 (81-109)||(53346273-53346301)
[»] chr1 (6 HSPs)
chr1 (66-184)||(30344073-30344191)
chr1 (81-181)||(30107246-30107346)
chr1 (81-181)||(39638301-39638401)
chr1 (81-181)||(39639853-39639952)
chr1 (68-184)||(30350338-30350446)
chr1 (81-181)||(30108949-30109049)
[»] chr5 (14 HSPs)
chr5 (68-184)||(19685631-19685747)
chr5 (68-184)||(19678816-19678932)
chr5 (68-184)||(41372933-41373049)
chr5 (81-181)||(30826746-30826846)
chr5 (1-52)||(9067497-9067548)
chr5 (81-181)||(30820260-30820360)
chr5 (81-181)||(19426540-19426639)
chr5 (81-181)||(31910881-31910981)
chr5 (81-181)||(20091410-20091510)
chr5 (81-177)||(31910762-31910859)
chr5 (81-181)||(1381863-1381963)
chr5 (81-181)||(20084843-20084943)
chr5 (81-181)||(5956998-5957098)
chr5 (81-109)||(19420107-19420135)
[»] scaffold0773 (1 HSPs)
scaffold0773 (69-177)||(1-109)
[»] chr4 (5 HSPs)
chr4 (123-184)||(7417432-7417493)
chr4 (68-184)||(20174591-20174709)
chr4 (68-108)||(7417479-7417519)
chr4 (81-181)||(26196794-26196894)
chr4 (68-108)||(48465388-48465428)
[»] chr7 (9 HSPs)
chr7 (68-184)||(46489277-46489392)
chr7 (81-181)||(34828991-34829091)
chr7 (81-181)||(37172037-37172137)
chr7 (81-181)||(46047411-46047511)
chr7 (68-184)||(46484298-46484414)
chr7 (81-181)||(37168697-37168797)
chr7 (81-181)||(34831676-34831776)
chr7 (81-181)||(37632157-37632257)
chr7 (81-177)||(37632330-37632426)
[»] scaffold0636 (1 HSPs)
scaffold0636 (81-158)||(8995-9072)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 25367268 - 25367103
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    ||||||||||||||| |||||| |||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25367268 gcccttgtttttgtcgaaaaatccaaaaatgccccccttttgaaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgctacccccac 25367169  T
Q  168 ttgcggggtaccttt-aannnnnnnnnaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 232  Q
    ||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||    
T  25367168 ttgcggggtacctttaaatttttttttaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 25367103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 44332591 - 44332707
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  44332591 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgcaacccccac 44332690  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  44332691 ttgcggggtacctttaa 44332707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 69 - 232
Target Start/End: Original strand, 1734596 - 1734760
Alignment:
Q  69 cccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctact 168  Q
    ||||||||| |||| |||||| |||||||||||| ||||||       ||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  1734596 cccttgtttgtgtcgaaaaatccaaaaatgccccccttttgaaaaaaattgcataaatgccctactttttcagtttttttggtaccttgctacccccact 1734695  T
Q  169 tgcggggtaccttt-aannnnnnnnnaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 232  Q
    |||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||    
T  1734696 tgcggggtacctttaaattttttttaaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 1734760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 1737533 - 1737368
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    ||||||||||||||| |||||| ||||||| |||| ||||||       |||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  1737533 gcccttgtttttgtcgaaaaatccaaaaatccccc-cttttgaaaaaaattgcacaaatgccctactttttcagtttttttggtaccttgctacccccac 1737435  T
Q  168 ttgcggggtacctttaa--nnnnnnnnnaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 232  Q
    |||||||||||||||||           |||||||||||||||||||||||||||||||||||||||    
T  1737434 ttgcggggtacctttaattttttttttaaaaaatattaagtaccccgcaagtcaaacttgcgtgcta 1737368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 36631971 - 36631855
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| |||||||||||||||||||||  ||||||||       ||||| ||||| |||||||||||||  ||||||||||||||| ||||| ||    
T  36631971 gcccttgtttgtgtccaaaaatacaaaaatgcttcacttttgcaaaaaattgcataaatgtcctactttttcagaatttctggtaccttgcaacccccac 36631872  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  36631871 ttgcggggtacctttaa 36631855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 36626400 - 36626516
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctaccccta 166  Q
    |||||||||| |||||||||||||||||||||| ||||||||       ||||| ||||||||||| |||||||  |||||||||||||||| |||||      
T  36626400 gcccttgtttgtgtccaaaaatacaaaaatgcctcacttttgcaaaaaattgcataaatgccctac-ttttcagaattttctggtaccttgcaacccccg 36626498  T
Q  167 cttgcggggtacctttaa 184  Q
    ||||||||||||||||||    
T  36626499 cttgcggggtacctttaa 36626516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 37020084 - 37019984
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| ||||| ||||| |||||||||||||||    
T  37020084 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgcaacccccacttgcggggtacct 37019985  T
Q  181 t 181  Q
    |    
T  37019984 t 37019984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 18812818 - 18812935
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctaccccta 166  Q
    |||||||||| ||||||||||||||||||||||||||||||        ||||| ||||||||||| |||||||  |||||||||||||||| ||||| |    
T  18812818 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttacaaaaaattgcataaatgccctac-ttttcagaattttctggtaccttgcaaccccca 18812916  T
Q  167 cttgc-ggggtacctttaa 184  Q
    ||||| |||||||||||||    
T  18812917 cttgcgggggtacctttaa 18812935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 1245670 - 1245570
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||    
T  1245670 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaacccccacttgcggggtacc 1245572  T
Q  180 tt 181  Q
    ||    
T  1245571 tt 1245570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 18814541 - 18814425
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctaccccta 166  Q
    |||||||||  |||||||||||||||||||||||||||||||        ||||  |||||||||||||| |||  |||||||||||||||| ||||| |    
T  18814541 gcccttgttcgtgtccaaaaatacaaaaatgccccacttttgcaaaaaaatgcatcaatgccctactttt-cagaattttctggtaccttgcaaccccca 18814443  T
Q  167 cttgcggggtacctttaa 184  Q
    ||||||||||||||||||    
T  18814442 cttgcggggtacctttaa 18814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 37013518 - 37013618
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| ||||| || || |||||||||||||||    
T  37013518 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgcaacacccacttgcggggtacct 37013617  T
Q  181 t 181  Q
    |    
T  37013618 t 37013618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 6901621 - 6901521
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||| |||||||  ||||||||||| |||| ||||| ||||||||||||||    
T  6901621 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctac-ttttcagaattttctggtactttgcaacccccacttgcggggtacc 6901523  T
Q  180 tt 181  Q
    ||    
T  6901522 tt 6901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 44339077 - 44338982
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctaccc 163  Q
    |||||||||| |||||||||||||||||||||||||||||||       ||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  44339077 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcataaatgccctac-ttttcagaattttctggtaccttgcaaccc 44338982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 11745139 - 11745239
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  11745139 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 11745237  T
Q  180 tt 181  Q
    ||    
T  11745238 tt 11745239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 11752646 - 11752546
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  11752646 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 11752548  T
Q  180 tt 181  Q
    ||    
T  11752547 tt 11752546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 43800618 - 43800718
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   || |||||||||||| ||||| ||||||||||||||    
T  43800618 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaattactggtaccttgcaacccccacttgcggggtacc 43800716  T
Q  180 tt 181  Q
    ||    
T  43800717 tt 43800718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 34362373 - 34362489
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  34362373 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgcaacccccac 34362472  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  34362473 ttgcggggtacctttaa 34362489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 8598508 - 8598349
Alignment:
Q  69 cccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctact 168  Q
    ||||||||| |||| |||||| |||||||||| | ||||||       ||||| |||| ||||||||||||||||||||||||||||||||||||| |||    
T  8598508 cccttgtttgtgtcgaaaaatccaaaaatgcctcccttttgaaaaaaattgcaaaaataccctactttttcagtttttctggtaccttgctacccccact 8598409  T
Q  169 tgcggggtacctttaannnnnnnnnaaaaatattaagtaccccgcaagtcaaacttgcgt 228  Q
    ||||||||||||| ||         |||||||||||||||||||||||||||||||||||    
T  8598408 tgcggggtaccttaaaaaaaattttaaaaatattaagtaccccgcaagtcaaacttgcgt 8598349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 8589166 - 8589327
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    ||||||||||||||| |||||| ||||||| ||||  |||||       ||||| ||||||| |||||||||||||||||||||||||||||||||| ||    
T  8589166 gcccttgtttttgtcgaaaaatccaaaaataccccctttttgaaaaaaattgcaaaaatgccatactttttcagtttttctggtaccttgctacccccac 8589265  T
Q  168 ttgcggggtacctttaa-nnnnnnnnnaaaaatattaagtaccccgcaagtcaaacttgcgt 228  Q
    |||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  8589266 ttgcggggtacctttaattttttttttaaaaatattaagtaccccgcaagtcaaacttgcgt 8589327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 34362770 - 34362668
Alignment:
Q  82 ccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacctt 181  Q
    |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||    
T  34362770 ccaaaaatacaaaaatgccccatttttgcaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgcaactcccacttgcgaggtacctt 34362671  T
Q  182 taa 184  Q
    |||    
T  34362670 taa 34362668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 4390733 - 4390846
Alignment:
Q  71 cttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctactt 169  Q
    ||||||| |||||||||||| ||||||||| ||||||||       ||||| ||||||||||||||| |||  |||| ||||||||||| ||||| ||||    
T  4390733 cttgtttgtgtccaaaaatataaaaatgcctcacttttgcaaaaaattgcataaatgccctactttt-cagaattttttggtaccttgcaacccccactt 4390831  T
Q  170 gcggggtacctttaa 184  Q
    |||||||||||||||    
T  4390832 gcggggtacctttaa 4390846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 22022483 - 22022599
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  22022483 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgcaacccccac 22022582  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  22022583 ttgcggggtacctttaa 22022599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 13654051 - 13653951
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||    
T  13654051 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaacccccacttgcggggtacc 13653953  T
Q  180 tt 181  Q
    ||    
T  13653952 tt 13653951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 22028926 - 22028831
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctaccc 163  Q
    |||||||||| |||||||||||||||||||||||||||||||       ||||| ||||||||||| |||||||  |||||||||||||||| ||||    
T  22028926 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcataaatgccctac-ttttcagaattttctggtaccttgcaaccc 22028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 13649761 - 13649861
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||    
T  13649761 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcggggtacc 13649859  T
Q  180 tt 181  Q
    ||    
T  13649860 tt 13649861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 9664371 - 9664275
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctacccctacttgcggggta 177  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||| |||||||  ||| ||| |||||||| ||||| ||||||||||||    
T  9664371 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctac-ttttcagaatttactgataccttgcaacccccacttgcggggta 9664275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 70 - 221
Target Start/End: Complemental strand, 26527896 - 26527744
Alignment:
Q  70 ccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnn-ttgcacaaatgccctactttttcagtttttctggtaccttgctacccctact 168  Q
    |||||||| |||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26527896 ccttgtttgtgtccaaaaatacaaaaatgcctcacttttgaaaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgctacccccact 26527797  T
Q  169 tgcggggtacctttaannnnnnnnnaaaaatattaagtaccccgcaagtcaaa 221  Q
    ||||||||||||||||         |||||| |||||||||||||||||||||    
T  26527796 tgcggggtacctttaaattttttttaaaaattttaagtaccccgcaagtcaaa 26527744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 26521443 - 26521504
Alignment:
Q  123 aaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacctttaa 184  Q
    |||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  26521443 aaatgctctactttttcagtttttctggtaccttactacccccacttgcggggtacctttaa 26521504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 53345462 - 53345562
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||    
T  53345462 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcggggtacc 53345560  T
Q  180 tt 181  Q
    ||    
T  53345561 tt 53345562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 53136026 - 53135926
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  53136026 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 53135928  T
Q  180 tt 181  Q
    ||    
T  53135927 tt 53135926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 26521417 - 26521457
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccactttt 108  Q
    |||||||||| ||||||||||||||||||||| | ||||||    
T  26521417 gcccttgtttgtgtccaaaaatacaaaaatgctctactttt 26521457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 53346301 - 53346273
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttg 109  Q
    |||||||||||||||||||||||||||||    
T  53346301 tccaaaaatacaaaaatgccccacttttg 53346273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 66 - 184
Target Start/End: Original strand, 30344073 - 30344191
Alignment:
Q  66 cagcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccct 165  Q
    |||||||||||| |||||||||||||||||||| ||||||||||       ||||||||||| ||||||||||||| |||||||||||||||| |||||     
T  30344073 cagcccttgtttgtgtccaaaaatacaaaaatgtcccacttttgcaaaaaattgcacaaatgtcctactttttcagattttctggtaccttgcaaccccc 30344172  T
Q  166 acttgcggggtacctttaa 184  Q
    |||||||||||||||||||    
T  30344173 acttgcggggtacctttaa 30344191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 30107246 - 30107346
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||    
T  30107246 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaacccccacttgcggggtacc 30107344  T
Q  180 tt 181  Q
    ||    
T  30107345 tt 30107346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 39638301 - 39638401
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||| |||||||  ||||| |||||||||| ||||| ||||||||||||||    
T  39638301 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctac-ttttcagaattttcgggtaccttgcaacccccacttgcggggtacc 39638399  T
Q  180 tt 181  Q
    ||    
T  39638400 tt 39638401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 39639952 - 39639853
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   |||||||||||||| ||||| |||||||||||||||    
T  39639952 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaattctggtaccttgcaacccccacttgcggggtacct 39639854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 30350446 - 30350338
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| ||||||||||||||||||||   ||||||||       ||||| |||||||||||||||||        ||||||||||| ||||| ||    
T  30350446 gcccttgtttgtgtccaaaaatacaaaaatgtttcacttttgcaaaaaattgcaaaaatgccctactttttc--------tggtaccttgcaacccccac 30350355  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  30350354 ttgcggggtacctttaa 30350338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 30109049 - 30108949
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||    
T  30109049 tccaaaaatacaaaaatgccctaattttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcggggtacc 30108951  T
Q  180 tt 181  Q
    ||    
T  30108950 tt 30108949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 19685747 - 19685631
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| |||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||  ||||||||||||||| ||||| ||    
T  19685747 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttgcaaaaaattgcataaatgccctactttttcagaatttctggtaccttgcaacccccac 19685648  T
Q  168 ttgcggggtacctttaa 184  Q
    |||||||||||||||||    
T  19685647 ttgcggggtacctttaa 19685631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 19678816 - 19678932
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctaccccta 166  Q
    |||||||||| ||||||||||||||||||||  |||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| |    
T  19678816 gcccttgtttgtgtccaaaaatacaaaaatgttccacttttgcaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaaccccca 19678914  T
Q  167 cttgcggggtacctttaa 184  Q
    ||||||||||||||||||    
T  19678915 cttgcggggtacctttaa 19678932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 41372933 - 41373049
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctaccccta 166  Q
    |||||||||| |||||||||||| ||||||||||||||||||       ||||| ||||| ||||| |||||||  |||||||||||||||| ||||| |    
T  41372933 gcccttgtttgtgtccaaaaatataaaaatgccccacttttgcaaaaaattgcataaatgtcctac-ttttcagaattttctggtaccttgcaaccccca 41373031  T
Q  167 cttgcggggtacctttaa 184  Q
    ||||||||||||||||||    
T  41373032 cttgcggggtacctttaa 41373049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 30826846 - 30826746
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| ||||| ||||| |||||||||||||||    
T  30826846 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgcaacccccacttgcggggtacct 30826747  T
Q  181 t 181  Q
    |    
T  30826746 t 30826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9067548 - 9067497
Alignment:
Q  1 atataatccaactccgcatatttgaatgtttcatttcatgatatacaatgaa 52  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9067548 atataatccaactccgaatatttgaatgtttcatttcatgatatacaatgaa 9067497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 30820260 - 30820360
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| ||||| || || |||||||||||||||    
T  30820260 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgcaacacccacttgcggggtacct 30820359  T
Q  181 t 181  Q
    |    
T  30820360 t 30820360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 19426639 - 19426540
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   |||||||||||||| ||||| |||||||||||||||    
T  19426639 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaattctggtaccttgcaacccccacttgcggggtacct 19426541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 31910981 - 31910881
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||    
T  31910981 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcggggtacc 31910883  T
Q  180 tt 181  Q
    ||    
T  31910882 tt 31910881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 20091510 - 20091410
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||||    ||| ||| |||||||| ||||| |||||||||||||||    
T  20091510 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttttagaatttactgataccttgcaacccccacttgcggggtacct 20091411  T
Q  181 t 181  Q
    |    
T  20091410 t 20091410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 31910762 - 31910859
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctacccctac-ttgcggggta 177  Q
    |||||||||||||||||||||||||||||       ||||| ||||| ||||| |||||||  |||||||||||||||| ||||| || ||||||||||    
T  31910762 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgtcctac-ttttcagaattttctggtaccttgcaacccccacattgcggggta 31910859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 1381963 - 1381863
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  1381963 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 1381865  T
Q  180 tt 181  Q
    ||    
T  1381864 tt 1381863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 20084843 - 20084943
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  20084843 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 20084941  T
Q  180 tt 181  Q
    ||    
T  20084942 tt 20084943  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 5956998 - 5957098
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| |||||| |||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  5956998 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgctctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 5957096  T
Q  180 tt 181  Q
    ||    
T  5957097 tt 5957098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 19420107 - 19420135
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttg 109  Q
    |||||||||||||||||||||||||||||    
T  19420107 tccaaaaatacaaaaatgccccacttttg 19420135  T

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Target: scaffold0773 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 109 - 1
Alignment:
Q  69 cccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctact 168  Q
    ||||||||| | || |||||| |||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  109 cccttgtttgtttcgaaaaatccaaaaatgccccccttttgaaaaaaattgcacaaatgccctactttttcagtttttctggtaccttgctacccccact 10  T
Q  169 tgcggggta 177  Q
    |||||||||    
T  9 tgcggggta 1  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 7417493 - 7417432
Alignment:
Q  123 aaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacctttaa 184  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7417493 aaatgccctactttttcagtttttctggtaccttgctacccccacttgcggggtacctttaa 7417432  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 20174709 - 20174591
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnn--ttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccc 164  Q
    |||||||||| ||||||||||||||||||||||  |||||||         ||||| ||||||||||||||| |||  |||| ||||||||||| |||||    
T  20174709 gcccttgtttgtgtccaaaaatacaaaaatgccttacttttgcaaaaaaaattgcataaatgccctactttt-cagaattttttggtaccttgcaacccc 20174611  T
Q  165 tacttgcggggtacctttaa 184  Q
     |||||||||||||||||||    
T  20174610 cacttgcggggtacctttaa 20174591  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 7417519 - 7417479
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccactttt 108  Q
    |||||||||| ||||||||||| ||||||||||| ||||||    
T  7417519 gcccttgtttgtgtccaaaaatccaaaaatgccctactttt 7417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 26196894 - 26196794
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||| |||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  26196894 tccaaaaatataaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 26196796  T
Q  180 tt 181  Q
    ||    
T  26196795 tt 26196794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 48465428 - 48465388
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccactttt 108  Q
    ||||| |||| | ||||||||||||||||||||||||||||    
T  48465428 gccctagtttgtatccaaaaatacaaaaatgccccactttt 48465388  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 46489392 - 46489277
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| ||||||||||||||||||||||||||||||        ||||| ||||||||||| |||||||  ||||||||||||||| ||||| ||    
T  46489392 gcccttgtttgtgtccaaaaatacaaaaatgccccacttttacaaaaaattgcataaatgccctac-ttttcagaatttctggtaccttgcaacccccac 46489294  T
Q  168 ttgcggggtacctttaa 184  Q
     ||||||||||||||||    
T  46489293 ctgcggggtacctttaa 46489277  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 34828991 - 34829091
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||    
T  34828991 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaacccccacttgcggggtacc 34829089  T
Q  180 tt 181  Q
    ||    
T  34829090 tt 34829091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 37172137 - 37172037
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagt-ttttctggtaccttgctacccctacttgcggggtacc 179  Q
    |||||||||||||||||||||||||||||       ||||| ||||||||||||||| |||  |||||||||||||||| ||||| ||||||||||||||    
T  37172137 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctactttt-cagaattttctggtaccttgcaacccccacttgcggggtacc 37172039  T
Q  180 tt 181  Q
    ||    
T  37172038 tt 37172037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 46047411 - 46047511
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctacttgcggggtacct 180  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| ||||| || || |||||||||||||||    
T  46047411 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgcaacacccacttgcggggtacct 46047510  T
Q  181 t 181  Q
    |    
T  46047511 t 46047511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 46484298 - 46484414
Alignment:
Q  68 gcccttgtttttgtccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgctacccctac 167  Q
    |||||||||| ||||||||||||||||||| || || |||||       ||||| ||||||||||||||||    |||||||||||||||| ||||| ||    
T  46484298 gcccttgtttgtgtccaaaaatacaaaaatacctcatttttgcaaaaaattgcataaatgccctactttttagaattttctggtaccttgcaacccccac 46484397  T
Q  168 ttgcggggtacctttaa 184  Q
    |||| ||||||||||||    
T  46484398 ttgcagggtacctttaa 46484414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 37168697 - 37168797
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||||||||||    
T  37168697 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcggggtacc 37168795  T
Q  180 tt 181  Q
    ||    
T  37168796 tt 37168797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 34831776 - 34831676
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtt-tttctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||   ||||||||||||||| ||||| ||||||| ||||||    
T  34831776 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaaatttctggtaccttgcaacccccacttgcgaggtacc 34831678  T
Q  180 tt 181  Q
    ||    
T  34831677 tt 34831676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 37632157 - 37632257
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagttttt-ctggtaccttgctacccctacttgcggggtacc 179  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||||||| |||  ||| ||| |||||||| ||||| ||||||||||||||    
T  37632157 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctactttt-cagaatttactgataccttgcaacccccacttgcggggtacc 37632255  T
Q  180 tt 181  Q
    ||    
T  37632256 tt 37632257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 37632426 - 37632330
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcag-tttttctggtaccttgctacccctacttgcggggta 177  Q
    ||||||||||||||||||||| | |||||       ||||| ||||||||||| |||||||  ||| ||| |||||||| ||||| ||||||||||||    
T  37632426 tccaaaaatacaaaaatgccctagttttgaaaaaaattgcataaatgccctac-ttttcagaatttactgataccttgcaacccccacttgcggggta 37632330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 8995 - 9072
Alignment:
Q  81 tccaaaaatacaaaaatgccccacttttgnnnnnnnttgcacaaatgccctactttttcagtttttctggtaccttgc 158  Q
    |||||||||||||||||||||||||||||       ||||| |||||||||||||||  | ||||||||||| |||||    
T  8995 tccaaaaatacaaaaatgccccacttttgaaaaaaattgcataaatgccctacttttcaaatttttctggtaacttgc 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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