View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_26 (Length: 301)
Name: NF5654_1D_low_26
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 12801904 - 12802183
Alignment:
| Q |
22 |
aaaaattactattgaattccattttgttcttagccaaaaataattgtaagaattgtagaatcttgtaactgaataatttgaaacttttagatctatccat |
121 |
Q |
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| T |
12801904 |
aaaaattactattgaattccattttgttcttagccaaaattaattgtaagaattgtagaatcttgtaactgaataatttgaaacttttagatctatccat |
12802003 |
T |
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| Q |
122 |
tagtctgactcatttttacaaatgaaatattatataattgatttcggctaaatagataatattagagtctact--------nnnnnnnccatttggattt |
213 |
Q |
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| T |
12802004 |
taatctgactcatttttacaaatgaaatattatataattgatttcgactaaatagataatattagagtctactaaaaaaaaaaaaaaaccatttggattt |
12802103 |
T |
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| Q |
214 |
gtcttgcaatcttctcatttattcataatatcttgagaagttgagaacttctagctaaaccatagaaggtaagaacacca |
293 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12802104 |
gtctgacaatcttctcatttattcataatatcttgagaagttgagaacttctagctaaaccatagaaggtaaaaacacca |
12802183 |
T |
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