View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5654_1D_low_29 (Length: 294)

Name: NF5654_1D_low_29
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5654_1D_low_29
NF5654_1D_low_29
[»] chr3 (8 HSPs)
chr3 (21-142)||(4264322-4264443)
chr3 (132-194)||(4271352-4271414)
chr3 (242-293)||(4271443-4271494)
chr3 (239-287)||(47610633-47610681)
chr3 (242-290)||(51038840-51038888)
chr3 (242-290)||(52839040-52839088)
chr3 (242-286)||(54539758-54539802)
chr3 (242-290)||(54540840-54540888)
[»] chr6 (4 HSPs)
chr6 (242-290)||(12382761-12382809)
chr6 (242-290)||(3721615-3721663)
chr6 (242-290)||(8822843-8822891)
chr6 (242-290)||(16704547-16704595)
[»] scaffold0045 (1 HSPs)
scaffold0045 (242-292)||(49132-49182)
[»] chr8 (3 HSPs)
chr8 (242-287)||(42982710-42982755)
chr8 (242-290)||(22221414-22221462)
chr8 (242-290)||(22227756-22227804)
[»] chr7 (2 HSPs)
chr7 (239-288)||(46483560-46483608)
chr7 (242-290)||(48934953-48935001)
[»] chr4 (4 HSPs)
chr4 (239-288)||(1289097-1289146)
chr4 (242-287)||(48781098-48781143)
chr4 (239-287)||(8758890-8758938)
chr4 (242-290)||(10470549-10470597)
[»] chr1 (3 HSPs)
chr1 (242-287)||(11436045-11436090)
chr1 (242-290)||(35594220-35594268)
chr1 (239-287)||(52276216-52276264)
[»] chr5 (2 HSPs)
chr5 (242-290)||(16650905-16650953)
chr5 (242-290)||(28538679-28538727)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 4264322 - 4264443
Alignment:
Q  21 agtagagagattgaagcggagataactatgagaatgttcatttggagcagggcagagtaaccaccaccctccgatgtgtttcttaaatttttgtaccgaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4264322 agtagagagattgaagcggagataactatgagaatgttcatttggagcagggcagagtaaccaccaccctccgatgtgtttcttaaatttttgtaccgaa 4264421  T
Q  121 gcaaaaactaatccctccaaaa 142  Q
    ||||||||||||||||||||||    
T  4264422 gcaaaaactaatccctccaaaa 4264443  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 4271352 - 4271414
Alignment:
Q  132 tccctccaaaaactgtatttaactactgcatccccatttctagggatatggcaaatgtatcta 194  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  4271352 tccctccaaaaactgtatttaactgctgcattcccatttctagggatatggcaaatgtatcta 4271414  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 4271443 - 4271494
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctct 293  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  4271443 taaattgtacttttctatctttaactttcaaaaatttgtaattttgatctct 4271494  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 47610681 - 47610633
Alignment:
Q  239 ggttaaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    ||||||| ||||||||||| ||| ||||||||||||| ||| |||||||    
T  47610681 ggttaaagtgcacttttccccctctaactttcaaaaacttgcaattttg 47610633  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 51038888 - 51038840
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  51038888 taaagtgcacttttccacccttaacttttaaaaagttgcaattttgacc 51038840  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 52839040 - 52839088
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| |||| |||||| ||| |||||| |||||||||||||||||||||    
T  52839040 taaagtgcaattttccccctctaacttccaaaaatttgtaattttgacc 52839088  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 54539758 - 54539802
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaatttt 286  Q
    |||| |||||||||||||| |||||||||||||| ||| ||||||    
T  54539758 taaagtgcacttttccacccttaactttcaaaaacttgcaatttt 54539802  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 54540888 - 54540840
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  54540888 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 54540840  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 12382809 - 12382761
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||||||| ||| ||| ||||||||||||||||||||    
T  12382809 taaagtgcacttttccacctctaatttttaaaaatttgtaattttgacc 12382761  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 3721615 - 3721663
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  3721615 taaagtgcacttttccccctctaactttcaaaaacttgcaattttgacc 3721663  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 8822891 - 8822843
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| |||||||||||  |||||||||||||||| ||| ||||||||||    
T  8822891 taaagtgcacttttccctctttaactttcaaaaacttgcaattttgacc 8822843  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 16704595 - 16704547
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  16704595 taaagtgcacttttcctcccttaactttcaaaaacttgcaattttgacc 16704547  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 49182 - 49132
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacctc 292  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  49182 taaattgcacttttccacccttaacttttaaaaacttgcaattttggcctc 49132  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 42982755 - 42982710
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    |||| ||||||||||||||||||| ||| ||||| |||||||||||    
T  42982755 taaagtgcacttttccacctttaagttttaaaaagttgtaattttg 42982710  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 22221462 - 22221414
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22221462 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22221414  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 22227804 - 22227756
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  22227804 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 22227756  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 46483608 - 46483560
Alignment:
Q  239 ggttaaattgcacttttccacctttaactttcaaaaatttgtaattttga 288  Q
    ||||||| ||||||||||| ||||||||||| ||||| ||||||||||||    
T  46483608 ggttaaagtgcacttttcc-cctttaacttttaaaaacttgtaattttga 46483560  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 48935001 - 48934953
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| |||| |||||||||  ||||||||||||| ||||||||||||||    
T  48935001 taaagtgcatttttccacccctaactttcaaaaacttgtaattttgacc 48934953  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 1289097 - 1289146
Alignment:
Q  239 ggttaaattgcacttttccacctttaactttcaaaaatttgtaattttga 288  Q
    ||||||| || |||||||| || |||||||||||| ||||||||||||||    
T  1289097 ggttaaagtgaacttttccccccttaactttcaaatatttgtaattttga 1289146  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 48781143 - 48781098
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    |||| ||||||||||| ||| ||||||||||||||||| |||||||    
T  48781143 taaagtgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 8758938 - 8758890
Alignment:
Q  239 ggttaaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    ||||||| ||||||||||| || |||||||||||||| ||| |||||||    
T  8758938 ggttaaaatgcacttttccccccttaactttcaaaaacttgcaattttg 8758890  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 10470549 - 10470597
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||| || |||||||||||||| ||| ||||||||||    
T  10470549 taaagtgcacttttccccccttaactttcaaaaacttgcaattttgacc 10470597  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 11436045 - 11436090
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    |||| ||||||||||| ||||||||||||||||| ||| |||||||    
T  11436045 taaagtgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 35594220 - 35594268
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  35594220 taaagtgcacttttccacccctaactttcaaaaacttgcaattttgacc 35594268  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 52276264 - 52276216
Alignment:
Q  239 ggttaaattgcacttttccacctttaactttcaaaaatttgtaattttg 287  Q
    ||||||| |||||||| || | | |||||||||||||||||||||||||    
T  52276264 ggttaaagtgcactttcccccttctaactttcaaaaatttgtaattttg 52276216  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 16650953 - 16650905
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| |||||||||||||| |||||||| ||||| ||| ||||||||||    
T  16650953 taaagtgcacttttccacccttaacttttaaaaacttgcaattttgacc 16650905  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 28538679 - 28538727
Alignment:
Q  242 taaattgcacttttccacctttaactttcaaaaatttgtaattttgacc 290  Q
    |||| ||||||||||||||  ||||||||||||| ||| ||||||||||    
T  28538679 taaagtgcacttttccacccgtaactttcaaaaacttgcaattttgacc 28538727  T

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