View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_32 (Length: 269)
Name: NF5654_1D_low_32
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 21441352 - 21441482
Alignment:
| Q |
129 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
228 |
Q |
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| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
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| Q |
229 |
cactatgaaacattgacacatacacgaacac |
259 |
Q |
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| T |
21441452 |
cactatgaaacattgacacattcacgaacac |
21441482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 21440854 - 21440967
Alignment:
| Q |
24 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttacataccaaaatgact |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
21440854 |
ccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttacataccaaaatgact |
21440953 |
T |
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| Q |
124 |
gtttattctaaata |
137 |
Q |
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| T |
21440954 |
gtttattctaaata |
21440967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 21440211 - 21440383
Alignment:
| Q |
74 |
attctcaaatttgtcactccttagtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaataca |
167 |
Q |
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| T |
21440211 |
attctcaaatgtgtctctcatttgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattaca |
21440310 |
T |
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| Q |
168 |
aattat---atgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
237 |
Q |
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| T |
21440311 |
agttataaaaagaagaatgcacaactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
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