View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_34 (Length: 266)
Name: NF5654_1D_low_34
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 4271875 - 4271694
Alignment:
| Q |
18 |
atcaagctcatgagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaattattctttctgaaaacaaattta |
117 |
Q |
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| T |
4271875 |
atcaagctcacgagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaatcattctttctgaaaacaaattta |
4271776 |
T |
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| Q |
118 |
tcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgagacccttcaaatcttcctcgcaatctt |
199 |
Q |
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| T |
4271775 |
tcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgaaacccttcaaatcttcctcgcaatctt |
4271694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 42346771 - 42346596
Alignment:
| Q |
19 |
tcaagctcatgagtcaatttactcttcttcttcgcaacaaacttgttcttttgtttcctctctcttattttccaa---ttattctttctgaaaacaaatt |
115 |
Q |
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||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||| | |
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| T |
42346771 |
tcaagctcatgggtcgatttactcttcttcttcgctacaaacttgttcttttgtttcctctctctgattttccaaacattattccttctgaacacaaact |
42346672 |
T |
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| Q |
116 |
tatcaaccttccacactcgacaacttgtgtcaatcacagtaacctcacttttcgtgagacccttcaaatcttcctc |
191 |
Q |
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| T |
42346671 |
tatcaactttccacactggacaactcgtgtctatcacagtaacctcacttttcgtgaaacccttgaaatcttcctc |
42346596 |
T |
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