View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_36 (Length: 260)
Name: NF5654_1D_low_36
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 4 - 254
Target Start/End: Original strand, 24202489 - 24202738
Alignment:
| Q |
4 |
gagtttggtgttatggcttcagctttatctaaagaaatggggatgatagacgtacagttgaagcgatgagaagaggcagctcttgaagccgtatccttgc |
103 |
Q |
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| T |
24202489 |
gagtttcgtgttatggcttcaactttatctaaagaaatgggaatgatggatgcacagttgaagcgatgagaagatgcagcacttgaagccgtatccttgc |
24202588 |
T |
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| Q |
104 |
gtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttctcacctactttttgata-gtctttt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |
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| T |
24202589 |
gtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttgtcaccgactttgtgataggtctttt |
24202688 |
T |
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| Q |
203 |
acagcaatttatctagataatttgagcctgttgtgaggatctttgtatagtt |
254 |
Q |
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| T |
24202689 |
acagcaatttatctagataatttgagtctgt--cgatgatctttgtatagtt |
24202738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 36668575 - 36668350
Alignment:
| Q |
4 |
gagtttggtgttatggcttcagctttatctaaagaaatggggatgatagacgtacagttgaagcgatgagaagaggcagctcttgaagccgtatccttgc |
103 |
Q |
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| T |
36668575 |
gagtttggtgtgatgtcttcagccttatctaaagaaatggggatgatggaaacacagttgaagcgatggaaagatgcagctcatgaagctgtatcattgc |
36668476 |
T |
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| Q |
104 |
gtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttctcacctactttttgata-gtctttt |
202 |
Q |
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| T |
36668475 |
gtgcgaaagcacattcgctaagagagaaattgagtgggaaggttattcacacaaactgccatttcattttctttctcaccttctttgtgataggtctttt |
36668376 |
T |
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| Q |
203 |
acagcaatttatctagataatttgag |
228 |
Q |
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|||| || |||||||||||||||||| |
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| T |
36668375 |
acagaaagttatctagataatttgag |
36668350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 27561686 - 27561474
Alignment:
| Q |
20 |
cttcagctttatctaaagaaatggggatgatagacgtacagttgaagcgatgagaagaggcagctcttgaagccgtatccttgcgtgagaaagcacattc |
119 |
Q |
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| T |
27561686 |
cttcagctttatctaaagaaatggggatgatggaaacacagttgaagcgatcgaaagatgcagctcttaaagctgtagcattgcgtgagaaagcacattc |
27561587 |
T |
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| Q |
120 |
actaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttctcacctactttttga-tagtcttttacagcaatttatctag |
218 |
Q |
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| T |
27561586 |
attcag--cgaaattgagtgggaaggttattcacacaaacttccctttcattttctttctcacctactttgtgattggtcttgtacagaaatttatctaa |
27561489 |
T |
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| Q |
219 |
ataatttgagcctgt |
233 |
Q |
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|||||||||| |||| |
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| T |
27561488 |
ataatttgagtctgt |
27561474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 36672796 - 36672918
Alignment:
| Q |
24 |
agctttatctaaagaaa-tggggatgatagacgtacagttgaagcgatgagaagaggcagctcttgaagccgtatccttgcgtgagaaagcacattcact |
122 |
Q |
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||||||||||||| ||| | ||||||| ||| | ||||||||| |||| |||| | ||||||||||| ||||| ||| ||||||||||| || ||| |
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| T |
36672796 |
agctttatctaaaaaaaattgggatgacagaagatcagttgaagtgatggaaagatgtagctcttgaagttgtatcattgtgtgagaaagcagttttact |
36672895 |
T |
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| Q |
123 |
aagagcgaaattgagtgggaagg |
145 |
Q |
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| T |
36672896 |
aagagcgaaattgagggggaagg |
36672918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 29411108 - 29410882
Alignment:
| Q |
3 |
cgagtttggtgttatggcttcagctttatctaaagaaatggggatgatagacgtacagttgaagcgatgagaagaggcagctcttgaagccgtatccttg |
102 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||| |||||||||||||| ||||| || |
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| T |
29411108 |
cgagtttcgtgtgatggcttcagctttatctaaagaaatggggatgatggacgcgcaggtgaagcgatggaaagatgcagctcttgaagctgtatcatta |
29411009 |
T |
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| Q |
103 |
cgtgagaaagcacattcactaagagcgaaattgagtgggaaggttattcacacaaagttccctttcattttctttctcacctactttttgat-agtcttt |
201 |
Q |
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||||||||||| ||||||||||||| ||||||||||| |||||||||| || ||||| ||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
29411008 |
cgtgagaaagcgcattcactaagagaaaaattgagtggaaaggttattcgcataaagtaccctttcattttctttctcgcctactttgtgataagtcttt |
29410909 |
T |
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| Q |
202 |
tacagcaatttatctagataatttgag |
228 |
Q |
| |
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||||| |||| |||| ||||||||||| |
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| T |
29410908 |
tacagaaattcatcttgataatttgag |
29410882 |
T |
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