View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_1D_low_51 (Length: 238)
Name: NF5654_1D_low_51
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 38868893 - 38868667
Alignment:
| Q |
8 |
gttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868893 |
gttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttc |
38868794 |
T |
|
| Q |
108 |
caattccaatccatcatgatgaacaactaggtcataagactggtt-tggttagtagttttttatgattattgtacctcacatttgttgataattttactt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38868793 |
caattccaatccatcatgatgaacaactaggtcataagactggttctggttagtagttttttatgattattgtacctcacatttgttgataattttactt |
38868694 |
T |
|
| Q |
207 |
tgtattttttaaaggggtttggtaact |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38868693 |
tgtattttttaaaggggtttggtaact |
38868667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 39046707 - 39046829
Alignment:
| Q |
9 |
ttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttcc |
108 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| |||||||| ||||||| || |||||||||| |||||||| |||| || |||||||||||| |
|
|
| T |
39046707 |
ttcaagaattcaaacaaagaatgaataaggtacttctagggcataatcatttaatattaggattcaactcctacatgaagcatcatgcaatcagacttcc |
39046806 |
T |
|
| Q |
109 |
aattccaatccatcatgatgaac |
131 |
Q |
| |
|
|||||||||| || ||||||||| |
|
|
| T |
39046807 |
aattccaatcgatgatgatgaac |
39046829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 30865314 - 30865211
Alignment:
| Q |
8 |
gttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttc |
107 |
Q |
| |
|
|||||||||||| |||||| ||||||||| || || ||||| || | ||||||| |||||||||||| |||||||| |||||||||||||||||| | |
|
|
| T |
30865314 |
gttcaagaattctaacaaaaggtgaatgatgtactcaaaggccagaaacatttaatcttgggattcaacacctacatgaagcattatcgaatcagactgc |
30865215 |
T |
|
| Q |
108 |
caat |
111 |
Q |
| |
|
|||| |
|
|
| T |
30865214 |
caat |
30865211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 3045651 - 3045795
Alignment:
| Q |
8 |
gttcaagaattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttc |
107 |
Q |
| |
|
|||||||| |||||| ||| |||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||| ||||| |||||||||||| | |
|
|
| T |
3045651 |
gttcaagagttcaaagaaagggtgaacgaggtacttaaagggcataaatatttaattttaggattcaatgcctacatgaagcattgtcgaatcagactac |
3045750 |
T |
|
| Q |
108 |
caattccaatccatcatgatgaacaactaggtcataagactggtt |
152 |
Q |
| |
|
|||||||| || || || || |||||| ||| || ||||||||| |
|
|
| T |
3045751 |
caattccagtcgatgataatcaacaacgaggccacgagactggtt |
3045795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 33468751 - 33468632
Alignment:
| Q |
15 |
aattcaaacaaatggtgaatgaggtccttaaagggcatatgtatttaattttgggattcaactactacatgaggcattatcgaatcagacttccaattcc |
114 |
Q |
| |
|
|||||||| ||| | ||||| |||| |||||| |||||| |||| ||||||||||||||| ||||||||| ||||||||| |||| |||| ||||||| |
|
|
| T |
33468751 |
aattcaaagaaaggatgaataaggtacttaaaaggcataatcatttgattttgggattcaacaactacatgaagcattatcgtatcacactttcaattcc |
33468652 |
T |
|
| Q |
115 |
aatccatcatgatgaacaac |
134 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
33468651 |
aatcaatgatgatgaacaac |
33468632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1206452 - 1206412
Alignment:
| Q |
8 |
gttcaagaattcaaacaaatggtgaatgaggtccttaaagg |
48 |
Q |
| |
|
||||||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
1206452 |
gttcaagaattcaaacaaagggcgaatgaggtacttaaagg |
1206412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University