View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5654_1D_low_54 (Length: 232)
Name: NF5654_1D_low_54
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_54 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 10522816 - 10523013
Alignment:
| Q |
33 |
cacagatacagatgcttgacgctggtaatagcttttaaaa-aatgacataatttgatgtaaatagctccatatggcatggacacttatgattgaaggtgt |
131 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10522816 |
cacagatacagatgcttgtcgctggtaataacttttaaaaaaatgacataatttgatgtaattacctccatatggcatggacacttatgattgaaggtgt |
10522915 |
T |
|
| Q |
132 |
gtccggtgtctgtcacgtgtccatgtccaatactgccacacatgattatattcaattatgccattttcttaaattactaccagcgtctttgtccgtgt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10522916 |
gtccggtgtctgtcacgtgtccatgtccaatacagacacacatgattatattcaattatgtcattttcttaaattactaccagtgtctttgtccgtgt |
10523013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 39582866 - 39582940
Alignment:
| Q |
140 |
tctgtcacgtgtccatgtccaatactgccacacatgattatattcaattatgccattttcttaaattactaccag |
214 |
Q |
| |
|
|||| ||||||||||||||||| || | ||||||||| |||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
39582866 |
tctgacacgtgtccatgtccaacaccgacacacatgactatattcaataatgtcattttcttaaatcactaccag |
39582940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 3095478 - 3095441
Alignment:
| Q |
173 |
atgattatattcaattatgccattttcttaaattacta |
210 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
3095478 |
atgattatattcaaatatgccatttttttaaattacta |
3095441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 21238861 - 21238821
Alignment:
| Q |
174 |
tgattatattcaattatgccattttcttaaattactaccag |
214 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
21238861 |
tgattacattcaattttgacattttcttaaattactaccag |
21238821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 10164507 - 10164469
Alignment:
| Q |
174 |
tgattatattcaattatgccattttcttaaattactacc |
212 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10164507 |
tgattacattcaattatgccattttcttaaattactacc |
10164469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 540776 - 540823
Alignment:
| Q |
112 |
acacttatgattgaaggtgtgtccggtgtctgtcacgtgtccatgtcc |
159 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
540776 |
acacttgtgatggaaggtgtgtccggtgtctgacatgtgtccatgtcc |
540823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 24758535 - 24758571
Alignment:
| Q |
174 |
tgattatattcaattatgccattttcttaaattacta |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24758535 |
tgattatattcaattatgtcattttcttaaattacta |
24758571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 32691787 - 32691749
Alignment:
| Q |
174 |
tgattatattcaattatgccattttcttaaattactacc |
212 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32691787 |
tgattacattcaattatgtcattttcttaaattactacc |
32691749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 42607699 - 42607635
Alignment:
| Q |
147 |
cgtgtccatgtccaatactgccacacatgattatattcaattatgccattttcttaaattactac |
211 |
Q |
| |
|
||||||| |||||||||| | |||| |||||||||||||||||| || |||| || |||||||| |
|
|
| T |
42607699 |
cgtgtccgtgtccaataccgacacatgtgattatattcaattatgtcagtttcatagattactac |
42607635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University