View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_61 (Length: 224)
Name: NF5654_1D_low_61
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_61 |
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| [»] chr6 (5 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 29831574 - 29831455
Alignment:
| Q |
104 |
tcttaaatcttgtattcttagaagaaagaactactt-aaaaacgatttataccaggctgtggcatattattatcatggtttgaatcttgatgagggaaat |
202 |
Q |
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| T |
29831574 |
tcttaaatcttgtattcttagaagaaagaactactttaaaaacgattta--ccaggctgtggcatattattatcatggtttgattcttgatgagggaaat |
29831477 |
T |
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| Q |
203 |
acagagaaatctcatgggatgg |
224 |
Q |
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| T |
29831476 |
acagagaaatctcatgggatgg |
29831455 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 29840145 - 29840229
Alignment:
| Q |
138 |
ttaaaaacgatttataccaggctgtggcatattattatcatggtttgaatcttgatgagggaaatacagagaaatctcatgggatgg |
224 |
Q |
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| T |
29840145 |
ttaaaaacgattta--ccaggctgtggcatattattatcatggtttgattcttgatgagggaaatacagagaaatctcatgggatgg |
29840229 |
T |
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Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 29831722 - 29831645
Alignment:
| Q |
5 |
aatatatagggattgatgttcaaacataaatttatccatttattcatcttaaagagtggaattatagcctccaaacta |
82 |
Q |
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| T |
29831722 |
aatatgtagggattgatgttcaaacataaatttatccatttattcatcttaaagagtggaattatagcctctaaacta |
29831645 |
T |
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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 29819167 - 29819085
Alignment:
| Q |
3 |
acaatatatagggattgatgttcaaacataaatttatccatttattcatcttaaagagtggaattatagcctccaaactactt |
85 |
Q |
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| T |
29819167 |
acaatatgtagggattgatgttcaaacataaagttatccatttattcgtcttaaagagtgaaattatagcctctaaactactt |
29819085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 28473188 - 28473142
Alignment:
| Q |
5 |
aatatatagggattgatgttcaaacataaatttatccatttattcat |
51 |
Q |
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| T |
28473188 |
aatatgtagggattgatgttcaaacataaatttatccatttattcat |
28473142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5720705 - 5720623
Alignment:
| Q |
3 |
acaatatatagggattgatgttcaaacataaatttatccatttattcatcttaaagagtggaattatagcctccaaactactt |
85 |
Q |
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| T |
5720705 |
acaatatgtagggattgatgttcaaacataaagttatccatttattcgtcttaaagagtgaaattatagcctctaaactactt |
5720623 |
T |
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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 34624998 - 34624937
Alignment:
| Q |
163 |
ggcatattattatcatggtttgaatcttgatgagggaaatacagagaaatctcatgggatgg |
224 |
Q |
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| T |
34624998 |
ggcatattattatcatggtttgattcttgatgagggcaatacagagaaatctcatgggatgg |
34624937 |
T |
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