View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_1D_low_9 (Length: 432)
Name: NF5654_1D_low_9
Description: NF5654_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_1D_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 9068167 - 9067822
Alignment:
| Q |
1 |
aacatccatcattatcacatgataaaaataataaaattttaggaaaaggttaaagttcaactgggggtgcagttggcttcctcaccgctaaaatacatat |
100 |
Q |
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| T |
9068167 |
aacatccatcattatcacatgataaaaataataaaattttaggaaaaggttaaagttcaactgggggtgcagttggcttcctcaccgctaaaatacatat |
9068068 |
T |
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| Q |
101 |
tttcatcagcaaaacggtctttgttcaccaactttattaatttaataaataaacacataaactaagtaaa-aaatcaaaagaagtttaattaatttccaa |
199 |
Q |
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| T |
9068067 |
tttcatcagcaaaacggtctttgttcaccaactttattaatttaataaataaacacataaactaagtaaattaatcaaaagaag---------tttccaa |
9067977 |
T |
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| Q |
200 |
caggggtacgatcatattcatatatgaattgaacaccccatatatttggcaccaacctttttgctaatgtaaaatcaacgccgatcgcggatgagaaata |
299 |
Q |
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| T |
9067976 |
caggggtacgatcatattcatatatgaattgaaca-cccatatatttggcaccaacc-ttttgctaatgtaaaatcaacgtcgatcgcggatgagaaata |
9067879 |
T |
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| Q |
300 |
tatataagacgactttgactttgacttttccttttccttgtgaatcttaaaccaaatcataaa |
362 |
Q |
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| T |
9067878 |
tatataagac------gactttgacttttccttttccttgtgaatcttaaaccaaatcataaa |
9067822 |
T |
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Back To:
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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 469910 - 469845
Alignment:
| Q |
367 |
tcttctccattccttcttttgcttcttcttcgtgagtttctcatctaaatgccattcatctaatga |
432 |
Q |
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| T |
469910 |
tcttctccattccttcttttgcttcttcttcgtgagtttctcatctcaatgccattcatgtaatga |
469845 |
T |
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