View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5654_2D_high_10 (Length: 636)
Name: NF5654_2D_high_10
Description: NF5654_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5654_2D_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 17 - 619
Target Start/End: Complemental strand, 3298645 - 3298036
Alignment:
| Q |
17 |
attatactaaaaataacaaataacatgttttattctatcaaccaaattatcnnnnnnnnnnnnt-------ctatcacatatttactaaccgttccaaga |
109 |
Q |
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| T |
3298645 |
attatactaaaaataacaaataacatgttttattctatcaaccaaattttcgaaaagaaaaaaaaaaaatactatcacatatttactaaccgttccaaga |
3298546 |
T |
|
| Q |
110 |
acatctcttttataaaagttacagacaatcatttacaaagaatattatctttactatgaactgaagccttatcaagttattgtatataggataattattt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3298545 |
acatctcttttataaaagttacagacaatcatttacaaagaatattatctttactatgaactgaagctttatcaagttattgtatataggataattattt |
3298446 |
T |
|
| Q |
210 |
tgtaatattaacttatttagataaagaaacgttagttttggtcggaaaaaagaaagatagagtcattagttataagtataaataaagtgtgtttaatatt |
309 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
3298445 |
tgtaatattaacttattttgataaagaaacgttagttttggtcggaaaaaagaaagatagaatcattagt--taagtataaataaagtgtgtttaatatt |
3298348 |
T |
|
| Q |
310 |
ttattctaaattagttaatttatgtaacgaaaagaaaccattgtnnnnnnnntaagtccaacatttgtgactgaaataacgatcaaatagaaaatatatt |
409 |
Q |
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|||||||||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3298347 |
ttattctaaattagttaatttatgcaacgaaaagaaatcgttgtaaaaaaaataagtccaacatttgtgactgaaataacgatcaaatataaaatatatt |
3298248 |
T |
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| Q |
410 |
taaagacaaccaaaatagcgaataataa--gcggtctccatttcgatcgctaaataaattagtgaccaatttttatgctttagtgatcaaaatttgagta |
507 |
Q |
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|||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3298247 |
taaagacaactaaaatagcgaataataattgtgatctccatttcgatcgctaaataaattagtgaccaatttttatgctttagtgatctaaatttgagta |
3298148 |
T |
|
| Q |
508 |
acttaagatgaggatttaagtagtgtcaatannnnnnngaaaaaattctaggctgaattgactataatcacaccatacattgttggaaagaggattcttt |
607 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
3298147 |
acttaagatgaggatttaagtagtgtcaatatttttttgaaaaaattctaggctgaattgactataatcacaccatgcattgttggaaagaggattcctt |
3298048 |
T |
|
| Q |
608 |
gcggtgtctttt |
619 |
Q |
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|||||||||||| |
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| T |
3298047 |
gcggtgtctttt |
3298036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 35249024 - 35248981
Alignment:
| Q |
282 |
taagtataaataaagtgtgtttaatattttattctaaattagtt |
325 |
Q |
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| T |
35249024 |
taagtataaacaaagtgtgtttaatattttattctaagttagtt |
35248981 |
T |
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